data_2MKL # _entry.id 2MKL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MKL pdb_00002mkl 10.2210/pdb2mkl/pdb RCSB RCSB103726 ? ? BMRB 19783 ? ? WWPDB D_1000103726 ? ? # _pdbx_database_related.db_id 19783 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MKL _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-02-10 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hennig, J.' 1 'Sattler, M.' 2 # _citation.id primary _citation.title 'The structural analysis of shark IgNAR antibodies reveals evolutionary principles of immunoglobulins.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 111 _citation.page_first 8155 _citation.page_last 8160 _citation.year 2014 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24830426 _citation.pdbx_database_id_DOI 10.1073/pnas.1321502111 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Feige, M.J.' 1 ? primary 'Grawert, M.A.' 2 ? primary 'Marcinowski, M.' 3 ? primary 'Hennig, J.' 4 ? primary 'Behnke, J.' 5 ? primary 'Auslander, D.' 6 ? primary 'Herold, E.M.' 7 ? primary 'Peschek, J.' 8 ? primary 'Castro, C.D.' 9 ? primary 'Flajnik, M.' 10 ? primary 'Hendershot, L.M.' 11 ? primary 'Sattler, M.' 12 ? primary 'Groll, M.' 13 ? primary 'Buchner, J.' 14 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Novel antigen receptor' _entity.formula_weight 11832.433 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'the fourth constant immunoglobulin domain (UNP residues 454-556)' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGRQTDISVSLLKPPFEEIWTQQTATIVCEIVYSDLENIKVFWQVNGVERKKGVETQNPEWSGSKSTIVSKLKVMASEWD SGTEYVCLVEDSELPTPVKASIRKA ; _entity_poly.pdbx_seq_one_letter_code_can ;MGRQTDISVSLLKPPFEEIWTQQTATIVCEIVYSDLENIKVFWQVNGVERKKGVETQNPEWSGSKSTIVSKLKVMASEWD SGTEYVCLVEDSELPTPVKASIRKA ; _entity_poly.pdbx_strand_id C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 ARG n 1 4 GLN n 1 5 THR n 1 6 ASP n 1 7 ILE n 1 8 SER n 1 9 VAL n 1 10 SER n 1 11 LEU n 1 12 LEU n 1 13 LYS n 1 14 PRO n 1 15 PRO n 1 16 PHE n 1 17 GLU n 1 18 GLU n 1 19 ILE n 1 20 TRP n 1 21 THR n 1 22 GLN n 1 23 GLN n 1 24 THR n 1 25 ALA n 1 26 THR n 1 27 ILE n 1 28 VAL n 1 29 CYS n 1 30 GLU n 1 31 ILE n 1 32 VAL n 1 33 TYR n 1 34 SER n 1 35 ASP n 1 36 LEU n 1 37 GLU n 1 38 ASN n 1 39 ILE n 1 40 LYS n 1 41 VAL n 1 42 PHE n 1 43 TRP n 1 44 GLN n 1 45 VAL n 1 46 ASN n 1 47 GLY n 1 48 VAL n 1 49 GLU n 1 50 ARG n 1 51 LYS n 1 52 LYS n 1 53 GLY n 1 54 VAL n 1 55 GLU n 1 56 THR n 1 57 GLN n 1 58 ASN n 1 59 PRO n 1 60 GLU n 1 61 TRP n 1 62 SER n 1 63 GLY n 1 64 SER n 1 65 LYS n 1 66 SER n 1 67 THR n 1 68 ILE n 1 69 VAL n 1 70 SER n 1 71 LYS n 1 72 LEU n 1 73 LYS n 1 74 VAL n 1 75 MET n 1 76 ALA n 1 77 SER n 1 78 GLU n 1 79 TRP n 1 80 ASP n 1 81 SER n 1 82 GLY n 1 83 THR n 1 84 GLU n 1 85 TYR n 1 86 VAL n 1 87 CYS n 1 88 LEU n 1 89 VAL n 1 90 GLU n 1 91 ASP n 1 92 SER n 1 93 GLU n 1 94 LEU n 1 95 PRO n 1 96 THR n 1 97 PRO n 1 98 VAL n 1 99 LYS n 1 100 ALA n 1 101 SER n 1 102 ILE n 1 103 ARG n 1 104 LYS n 1 105 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Nurse shark' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ginglymostoma cirratum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7801 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q90544_GINCI _struct_ref.pdbx_db_accession Q90544 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RQTDISVSLLKPPFEEIWTQQTATIVCEIVYSDLENIKVFWQVNGVERKKGVETQNPEWSGSKSTIVSKLKVMASEWDSG TEYVCLVEDSELPTPVKASIRKA ; _struct_ref.pdbx_align_begin 454 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MKL _struct_ref_seq.pdbx_strand_id C _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 105 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q90544 _struct_ref_seq.db_align_beg 454 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 556 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 105 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2MKL MET C 1 ? UNP Q90544 ? ? 'expression tag' 1 1 1 2MKL GLY C 2 ? UNP Q90544 ? ? 'expression tag' 2 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC aliphatic' 1 3 1 '2D 1H-13C HSQC aromatic' 1 4 1 '3D CBCA(CO)NH' 1 5 1 '3D HNCO' 1 6 1 '3D HNCA' 1 7 1 '3D HNCACB' 1 8 1 '3D HBHA(CO)NH' 1 9 1 '3D HCCH-TOCSY' 1 10 1 '3D 1H-15N NOESY' 1 11 1 '3D 1H-13C NOESY aliphatic' 1 12 1 '3D 1H-13C NOESY aromatic' 1 13 2 '2D 1H-13C HSQC aliphatic' 1 14 3 '2D 1H-15N HSQC' 1 15 3 '3D HNCO' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;300-500 uM [U-100% 13C; U-100% 15N] protein, 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 2 mM potassium phosphate, 0.02 % sodium azide, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;300-500 uM [U-10% 13C] protein, 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 2 mM potassium phosphate, 0.02 % sodium azide, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' ;300-500 uM [U-100% 13C; U-100% 15N] protein, 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 2 mM potassium phosphate, 0.02 % sodium azide, 10 mg/mL Pf1 phage, 90% H2O/10% D2O ; 3 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 750 Bruker AVANCE 2 'Bruker Avance' 800 Bruker AVANCE 3 'Bruker Avance' 900 Bruker AVANCE 4 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MKL _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with acceptable covalent geometry' _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MKL _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MKL _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Keller and Wuthrich' 'chemical shift assignment' CARA ? 1 'Keller and Wuthrich' 'peak picking' CARA ? 2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 3 'Guntert, Mumenthaler and Wuthrich' 'structure calculation' CYANA 3.0 4 ;Linge, O'Donoghue and Nilges ; 'water refinement' ARIA ? 5 ;Linge, O'Donoghue and Nilges ; refinement ARIA ? 6 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MKL _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MKL _struct.title 'Solution structure of the fourth constant immunoglobulin domain of nurse shark IgNAR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MKL _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'Ig domain, IgNAR, IMMUNE SYSTEM' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id MET _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 75 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 81 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id MET _struct_conf.beg_auth_asym_id C _struct_conf.beg_auth_seq_id 75 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id C _struct_conf.end_auth_seq_id 81 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 29 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 87 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 29 _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 87 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 8 ? LEU A 12 ? SER C 8 LEU C 12 A 2 ILE A 27 ? TYR A 33 ? ILE C 27 TYR C 33 A 3 LYS A 65 ? LEU A 72 ? LYS C 65 LEU C 72 A 4 VAL A 54 ? SER A 62 ? VAL C 54 SER C 62 B 1 VAL A 48 ? GLU A 49 ? VAL C 48 GLU C 49 B 2 LYS A 40 ? VAL A 45 ? LYS C 40 VAL C 45 B 3 TYR A 85 ? GLU A 90 ? TYR C 85 GLU C 90 B 4 VAL A 98 ? ILE A 102 ? VAL C 98 ILE C 102 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 10 ? N SER C 10 O GLU A 30 ? O GLU C 30 A 2 3 N ILE A 31 ? N ILE C 31 O ILE A 68 ? O ILE C 68 A 3 4 O VAL A 69 ? O VAL C 69 N GLN A 57 ? N GLN C 57 B 1 2 O VAL A 48 ? O VAL C 48 N VAL A 45 ? N VAL C 45 B 2 3 N LYS A 40 ? N LYS C 40 O GLU A 90 ? O GLU C 90 B 3 4 N CYS A 87 ? N CYS C 87 O ALA A 100 ? O ALA C 100 # _atom_sites.entry_id 2MKL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET C . n A 1 2 GLY 2 2 2 GLY GLY C . n A 1 3 ARG 3 3 3 ARG ARG C . n A 1 4 GLN 4 4 4 GLN GLN C . n A 1 5 THR 5 5 5 THR THR C . n A 1 6 ASP 6 6 6 ASP ASP C . n A 1 7 ILE 7 7 7 ILE ILE C . n A 1 8 SER 8 8 8 SER SER C . n A 1 9 VAL 9 9 9 VAL VAL C . n A 1 10 SER 10 10 10 SER SER C . n A 1 11 LEU 11 11 11 LEU LEU C . n A 1 12 LEU 12 12 12 LEU LEU C . n A 1 13 LYS 13 13 13 LYS LYS C . n A 1 14 PRO 14 14 14 PRO PRO C . n A 1 15 PRO 15 15 15 PRO PRO C . n A 1 16 PHE 16 16 16 PHE PHE C . n A 1 17 GLU 17 17 17 GLU GLU C . n A 1 18 GLU 18 18 18 GLU GLU C . n A 1 19 ILE 19 19 19 ILE ILE C . n A 1 20 TRP 20 20 20 TRP TRP C . n A 1 21 THR 21 21 21 THR THR C . n A 1 22 GLN 22 22 22 GLN GLN C . n A 1 23 GLN 23 23 23 GLN GLN C . n A 1 24 THR 24 24 24 THR THR C . n A 1 25 ALA 25 25 25 ALA ALA C . n A 1 26 THR 26 26 26 THR THR C . n A 1 27 ILE 27 27 27 ILE ILE C . n A 1 28 VAL 28 28 28 VAL VAL C . n A 1 29 CYS 29 29 29 CYS CYS C . n A 1 30 GLU 30 30 30 GLU GLU C . n A 1 31 ILE 31 31 31 ILE ILE C . n A 1 32 VAL 32 32 32 VAL VAL C . n A 1 33 TYR 33 33 33 TYR TYR C . n A 1 34 SER 34 34 34 SER SER C . n A 1 35 ASP 35 35 35 ASP ASP C . n A 1 36 LEU 36 36 36 LEU LEU C . n A 1 37 GLU 37 37 37 GLU GLU C . n A 1 38 ASN 38 38 38 ASN ASN C . n A 1 39 ILE 39 39 39 ILE ILE C . n A 1 40 LYS 40 40 40 LYS LYS C . n A 1 41 VAL 41 41 41 VAL VAL C . n A 1 42 PHE 42 42 42 PHE PHE C . n A 1 43 TRP 43 43 43 TRP TRP C . n A 1 44 GLN 44 44 44 GLN GLN C . n A 1 45 VAL 45 45 45 VAL VAL C . n A 1 46 ASN 46 46 46 ASN ASN C . n A 1 47 GLY 47 47 47 GLY GLY C . n A 1 48 VAL 48 48 48 VAL VAL C . n A 1 49 GLU 49 49 49 GLU GLU C . n A 1 50 ARG 50 50 50 ARG ARG C . n A 1 51 LYS 51 51 51 LYS LYS C . n A 1 52 LYS 52 52 52 LYS LYS C . n A 1 53 GLY 53 53 53 GLY GLY C . n A 1 54 VAL 54 54 54 VAL VAL C . n A 1 55 GLU 55 55 55 GLU GLU C . n A 1 56 THR 56 56 56 THR THR C . n A 1 57 GLN 57 57 57 GLN GLN C . n A 1 58 ASN 58 58 58 ASN ASN C . n A 1 59 PRO 59 59 59 PRO PRO C . n A 1 60 GLU 60 60 60 GLU GLU C . n A 1 61 TRP 61 61 61 TRP TRP C . n A 1 62 SER 62 62 62 SER SER C . n A 1 63 GLY 63 63 63 GLY GLY C . n A 1 64 SER 64 64 64 SER SER C . n A 1 65 LYS 65 65 65 LYS LYS C . n A 1 66 SER 66 66 66 SER SER C . n A 1 67 THR 67 67 67 THR THR C . n A 1 68 ILE 68 68 68 ILE ILE C . n A 1 69 VAL 69 69 69 VAL VAL C . n A 1 70 SER 70 70 70 SER SER C . n A 1 71 LYS 71 71 71 LYS LYS C . n A 1 72 LEU 72 72 72 LEU LEU C . n A 1 73 LYS 73 73 73 LYS LYS C . n A 1 74 VAL 74 74 74 VAL VAL C . n A 1 75 MET 75 75 75 MET MET C . n A 1 76 ALA 76 76 76 ALA ALA C . n A 1 77 SER 77 77 77 SER SER C . n A 1 78 GLU 78 78 78 GLU GLU C . n A 1 79 TRP 79 79 79 TRP TRP C . n A 1 80 ASP 80 80 80 ASP ASP C . n A 1 81 SER 81 81 81 SER SER C . n A 1 82 GLY 82 82 82 GLY GLY C . n A 1 83 THR 83 83 83 THR THR C . n A 1 84 GLU 84 84 84 GLU GLU C . n A 1 85 TYR 85 85 85 TYR TYR C . n A 1 86 VAL 86 86 86 VAL VAL C . n A 1 87 CYS 87 87 87 CYS CYS C . n A 1 88 LEU 88 88 88 LEU LEU C . n A 1 89 VAL 89 89 89 VAL VAL C . n A 1 90 GLU 90 90 90 GLU GLU C . n A 1 91 ASP 91 91 91 ASP ASP C . n A 1 92 SER 92 92 92 SER SER C . n A 1 93 GLU 93 93 93 GLU GLU C . n A 1 94 LEU 94 94 94 LEU LEU C . n A 1 95 PRO 95 95 95 PRO PRO C . n A 1 96 THR 96 96 96 THR THR C . n A 1 97 PRO 97 97 97 PRO PRO C . n A 1 98 VAL 98 98 98 VAL VAL C . n A 1 99 LYS 99 99 99 LYS LYS C . n A 1 100 ALA 100 100 100 ALA ALA C . n A 1 101 SER 101 101 101 SER SER C . n A 1 102 ILE 102 102 102 ILE ILE C . n A 1 103 ARG 103 103 103 ARG ARG C . n A 1 104 LYS 104 104 104 LYS LYS C . n A 1 105 ALA 105 105 105 ALA ALA C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-02 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_spectrometer 4 2 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_spectrometer.model' 5 2 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.007 _pdbx_nmr_ensemble_rms.distance_rms_dev_error 0.002 _pdbx_nmr_ensemble_rms.entry_id 2MKL _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id entity-1 ? 300-500 uM '[U-100% 13C; U-100% 15N]' 1 'sodium chloride-2' 137 ? mM ? 1 'potassium chloride-3' 2.7 ? mM ? 1 'sodium phosphate-4' 10 ? mM ? 1 'potassium phosphate-5' 2 ? mM ? 1 'sodium azide-6' 0.02 ? % ? 1 entity-7 ? 300-500 uM '[U-10% 13C]' 2 'sodium chloride-8' 137 ? mM ? 2 'potassium chloride-9' 2.7 ? mM ? 2 'sodium phosphate-10' 10 ? mM ? 2 'potassium phosphate-11' 2 ? mM ? 2 'sodium azide-12' 0.02 ? % ? 2 entity-13 ? 300-500 uM '[U-100% 13C; U-100% 15N]' 3 'sodium chloride-14' 137 ? mM ? 3 'potassium chloride-15' 2.7 ? mM ? 3 'sodium phosphate-16' 10 ? mM ? 3 'potassium phosphate-17' 2 ? mM ? 3 'sodium azide-18' 0.02 ? % ? 3 'Pf1 phage-19' 10 ? mg/mL ? 3 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MKL _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1265 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 756 _pdbx_nmr_constraints.NOE_long_range_total_count 429 _pdbx_nmr_constraints.NOE_medium_range_total_count 80 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HG1 C THR 24 ? ? O C VAL 74 ? ? 1.57 2 3 OD1 C ASP 80 ? ? HZ2 C LYS 104 ? ? 1.56 3 3 OE2 C GLU 55 ? ? HZ1 C LYS 71 ? ? 1.59 4 6 HG2 C GLU 17 ? ? HE1 C TRP 79 ? ? 1.30 5 6 HZ3 C LYS 13 ? ? OE2 C GLU 17 ? ? 1.59 6 7 OD1 C ASP 6 ? ? HZ2 C LYS 65 ? ? 1.57 7 8 HE1 C TYR 33 ? ? HD11 C ILE 68 ? ? 1.20 8 8 H C THR 24 ? ? HB2 C ALA 76 ? ? 1.29 9 8 HB C THR 24 ? ? HA C ALA 76 ? ? 1.29 10 8 HZ2 C LYS 13 ? ? O C ALA 105 ? ? 1.57 11 8 OD1 C ASP 80 ? ? HZ1 C LYS 104 ? ? 1.59 12 9 HG22 C VAL 74 ? ? HH C TYR 85 ? ? 1.13 13 10 HB1 C ALA 25 ? ? HA C ALA 76 ? ? 1.33 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU C 17 ? ? -66.79 -77.48 2 1 GLU C 18 ? ? -144.40 -84.19 3 1 GLN C 22 ? ? -166.66 78.66 4 1 ALA C 25 ? ? -128.43 -54.05 5 2 GLN C 4 ? ? 69.61 -67.21 6 2 PHE C 16 ? ? 72.66 153.39 7 2 GLU C 18 ? ? 62.44 -165.97 8 2 GLN C 23 ? ? -166.35 -63.88 9 2 ALA C 25 ? ? -78.22 28.20 10 2 LYS C 52 ? ? -43.68 164.59 11 3 ALA C 25 ? ? -71.47 26.62 12 3 LYS C 52 ? ? -49.63 166.56 13 4 GLN C 4 ? ? -179.41 -71.65 14 4 GLN C 22 ? ? 66.68 94.03 15 4 ALA C 25 ? ? -78.10 26.71 16 4 LYS C 52 ? ? -45.31 165.79 17 5 GLU C 18 ? ? 62.85 -165.35 18 5 GLN C 23 ? ? -129.77 -157.34 19 5 LYS C 52 ? ? -42.72 164.52 20 6 GLN C 4 ? ? 61.65 -86.53 21 6 GLU C 18 ? ? -70.82 -79.43 22 6 GLN C 22 ? ? -150.16 50.14 23 6 GLN C 23 ? ? 57.22 -148.83 24 6 ALA C 25 ? ? -126.42 -53.32 25 6 LYS C 52 ? ? -41.77 163.75 26 7 GLU C 17 ? ? 66.10 -65.87 27 7 GLU C 18 ? ? -177.27 -43.84 28 7 GLN C 22 ? ? -110.96 72.42 29 7 GLN C 23 ? ? 68.41 -68.13 30 7 ASP C 35 ? ? 81.60 9.96 31 7 LYS C 52 ? ? -45.51 164.12 32 8 LYS C 52 ? ? -42.19 162.66 33 9 ARG C 3 ? ? -140.93 -80.64 34 9 GLU C 18 ? ? 67.16 -179.04 35 9 ALA C 25 ? ? -78.08 30.31 36 9 LYS C 52 ? ? -40.65 163.02 37 10 PRO C 14 ? ? -34.23 103.33 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 8 _pdbx_validate_peptide_omega.auth_comp_id_1 GLU _pdbx_validate_peptide_omega.auth_asym_id_1 C _pdbx_validate_peptide_omega.auth_seq_id_1 37 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 C _pdbx_validate_peptide_omega.auth_seq_id_2 38 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 136.48 #