data_2MKO # _entry.id 2MKO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MKO pdb_00002mko 10.2210/pdb2mko/pdb RCSB RCSB103729 ? ? BMRB 19784 ? ? WWPDB D_1000103729 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2mkm PDB . unspecified 19784 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MKO _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-02-11 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cerofolini, L.' 1 'Fragai, M.' 2 'Giachetti, A.' 3 'Limongelli, V.' 4 'Luchinat, C.' 5 'Novellino, E.' 6 'Parrinello, M.' 7 'Randazzo, A.' 8 # _citation.id primary _citation.title 'G-triplex structure and formation propensity.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 42 _citation.page_first 13393 _citation.page_last 13404 _citation.year 2014 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25378342 _citation.pdbx_database_id_DOI 10.1093/nar/gku1084 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cerofolini, L.' 1 ? primary 'Amato, J.' 2 ? primary 'Giachetti, A.' 3 ? primary 'Limongelli, V.' 4 ? primary 'Novellino, E.' 5 ? primary 'Parrinello, M.' 6 ? primary 'Fragai, M.' 7 ? primary 'Randazzo, A.' 8 ? primary 'Luchinat, C.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "DNA_(5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*G)-3')" 3476.254 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGTTGGTGTGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DT n 1 10 DG n 1 11 DG n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2MKO _struct_ref.pdbx_db_accession 2MKO _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GGTTGGTGTGG _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MKO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 11 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2MKO _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 11 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D DQF-COSY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D 1H-1H NOESY' 1 4 1 '2D 1H-1H ROESY' 1 5 1 '2D JR-HMBC' 1 6 1 E.COSY 1 7 1 '2D 31P-1H HSQC' 1 8 1 '2D 1H-13C HSQC' 1 9 1 IPAP 1 10 1 '2D 31P-1H COSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.08 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 274 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;0.7 mM DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*G)-3'), 70 mM potassium chloride, 10 mM potassium phosphate, 0.2 mM EDTA, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Bruker AVANCE 1 'Bruker Avance' 800 Bruker AVANCE 2 'Bruker Avance' 700 Bruker AVANCE 3 'Bruker Avance' 600 Bruker AVANCE 4 'Bruker Avance' 500 Bruker DRX 5 'Bruker DRX' 950 Bruker AVANCE 6 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MKO _pdbx_nmr_refine.method 'restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MKO _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MKO _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo and Kollman' refinement Amber ? 1 'Keller and Wuthrich' 'chemical shift assignment' CARA ? 2 'Bruker Biospin' collection TopSpin ? 3 'Bruker Biospin' processing TopSpin ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MKO _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MKO _struct.title 'G-triplex structure and formation propensity' _struct.pdbx_model_details 'closest to the average, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MKO _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'G-triplex, G-triad, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 B K . K ? ? A DG 1 A K 101 1_555 ? ? ? ? ? ? ? 2.601 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 1_555 B K . K ? ? A DG 2 A K 101 1_555 ? ? ? ? ? ? ? 2.578 ? ? metalc3 metalc ? ? A DG 5 O6 ? ? ? 1_555 B K . K ? ? A DG 5 A K 101 1_555 ? ? ? ? ? ? ? 2.716 ? ? metalc4 metalc ? ? A DG 6 O6 ? ? ? 1_555 B K . K ? ? A DG 6 A K 101 1_555 ? ? ? ? ? ? ? 2.889 ? ? metalc5 metalc ? ? A DG 10 O6 ? ? ? 1_555 B K . K ? ? A DG 10 A K 101 1_555 ? ? ? ? ? ? ? 2.646 ? ? metalc6 metalc ? ? A DG 11 O6 ? ? ? 1_555 B K . K ? ? A DG 11 A K 101 1_555 ? ? ? ? ? ? ? 2.795 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 6 O6 ? ? A DG 1 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 6 N7 ? ? A DG 1 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 5 N2 ? ? A DG 2 A DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 5 N1 ? ? A DG 2 A DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 11 N2 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 11 N1 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id K _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE K A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 1 ? DG A 1 . ? 1_555 ? 2 AC1 6 DG A 2 ? DG A 2 . ? 1_555 ? 3 AC1 6 DG A 5 ? DG A 5 . ? 1_555 ? 4 AC1 6 DG A 6 ? DG A 6 . ? 1_555 ? 5 AC1 6 DG A 10 ? DG A 10 . ? 1_555 ? 6 AC1 6 DG A 11 ? DG A 11 . ? 1_555 ? # _atom_sites.entry_id 2MKO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id K _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 12 _pdbx_nonpoly_scheme.pdb_mon_id K _pdbx_nonpoly_scheme.auth_mon_id K _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 1_555 76.2 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 129.6 ? 3 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 67.0 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 78.1 ? 5 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 105.3 ? 6 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 79.7 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 101.8 ? 8 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 170.2 ? 9 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 108.7 ? 10 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 65.0 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 132.8 ? 12 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 92.7 ? 13 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 83.3 ? 14 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 147.9 ? 15 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 95.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-19 2 'Structure model' 1 1 2014-12-10 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.value' 11 3 'Structure model' '_struct_conn.pdbx_dist_value' 12 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*G)-3')-1 ; 0.7 ? mM ? 1 'potassium chloride-2' 70 ? mM ? 1 'potassium phosphate-3' 10 ? mM ? 1 EDTA-4 0.2 ? mM ? 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MKO _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 22 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count 6 _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count 11 _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count 9 _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count 50 _pdbx_nmr_constraints.NOE_constraints_total ? _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.99 108.30 3.69 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.64 108.30 5.34 0.30 N 3 1 N3 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 118.69 122.30 -3.61 0.60 N 4 1 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.16 122.90 -3.74 0.60 N 5 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 115.79 108.30 7.49 0.30 N 6 1 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 118.44 122.30 -3.86 0.60 N 7 1 "C3'" A DT 4 ? ? "O3'" A DT 4 ? ? P A DG 5 ? ? 128.58 119.70 8.88 1.20 Y 8 1 N3 A DG 5 ? ? C4 A DG 5 ? ? C5 A DG 5 ? ? 125.57 128.60 -3.03 0.50 N 9 1 "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? P A DT 7 ? ? 127.11 119.70 7.41 1.20 Y 10 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.78 108.30 3.48 0.30 N 11 1 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.20 122.30 -4.10 0.60 N 12 1 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 109.71 106.00 3.71 0.60 N 13 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.41 108.30 2.11 0.30 N 14 1 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 128.13 119.70 8.43 1.20 Y 15 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.39 122.90 -4.51 0.60 N 16 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 120.81 108.30 12.51 0.30 N 17 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.54 108.30 2.24 0.30 N 18 1 N1 A DG 11 ? ? C6 A DG 11 ? ? O6 A DG 11 ? ? 115.80 119.90 -4.10 0.60 N 19 2 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.21 108.30 1.91 0.30 N 20 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.17 108.30 4.87 0.30 N 21 2 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.08 122.90 -3.82 0.60 N 22 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 114.88 108.30 6.58 0.30 N 23 2 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 117.61 122.30 -4.69 0.60 N 24 2 "C3'" A DT 4 ? ? "O3'" A DT 4 ? ? P A DG 5 ? ? 127.98 119.70 8.28 1.20 Y 25 2 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 115.66 119.90 -4.24 0.70 N 26 2 "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? P A DT 7 ? ? 127.13 119.70 7.43 1.20 Y 27 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.66 108.30 4.36 0.30 N 28 2 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.44 122.30 -3.86 0.60 N 29 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.57 108.30 3.27 0.30 N 30 2 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 128.08 119.70 8.38 1.20 Y 31 2 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 118.57 122.30 -3.73 0.60 N 32 2 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.54 122.90 -4.36 0.60 N 33 2 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 121.74 108.30 13.44 0.30 N 34 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.55 108.30 2.25 0.30 N 35 2 N1 A DG 11 ? ? C6 A DG 11 ? ? O6 A DG 11 ? ? 116.29 119.90 -3.61 0.60 N 36 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.74 108.30 4.44 0.30 N 37 3 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 115.65 119.90 -4.25 0.70 N 38 3 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 126.93 119.70 7.23 1.20 Y 39 3 N3 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 118.54 122.30 -3.76 0.60 N 40 3 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.11 122.90 -3.79 0.60 N 41 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.79 108.30 5.49 0.30 N 42 3 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 117.98 122.30 -4.32 0.60 N 43 3 N3 A DG 5 ? ? C2 A DG 5 ? ? N2 A DG 5 ? ? 115.69 119.90 -4.21 0.70 N 44 3 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.85 108.30 3.55 0.30 N 45 3 "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? P A DT 7 ? ? 128.05 119.70 8.35 1.20 Y 46 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.51 108.30 4.21 0.30 N 47 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.14 108.30 1.84 0.30 N 48 3 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 128.17 119.70 8.47 1.20 Y 49 3 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.14 108.30 1.84 0.30 N 50 3 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.59 122.90 -4.31 0.60 N 51 3 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 121.55 108.30 13.25 0.30 N 52 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.49 108.30 2.19 0.30 N 53 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.14 108.30 3.84 0.30 N 54 4 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 126.97 119.70 7.27 1.20 Y 55 4 N3 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 118.51 122.30 -3.79 0.60 N 56 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.78 108.30 4.48 0.30 N 57 4 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 118.33 122.30 -3.97 0.60 N 58 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.18 108.30 1.88 0.30 N 59 4 N3 A DG 5 ? ? C4 A DG 5 ? ? C5 A DG 5 ? ? 125.34 128.60 -3.26 0.50 N 60 4 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 114.52 111.50 3.02 0.50 N 61 4 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.21 119.90 -3.69 0.60 N 62 4 "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? P A DT 7 ? ? 127.74 119.70 8.04 1.20 Y 63 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.51 108.30 4.21 0.30 N 64 4 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.35 122.30 -3.95 0.60 N 65 4 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.10 122.90 -3.80 0.60 N 66 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.52 108.30 3.22 0.30 N 67 4 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 128.45 119.70 8.75 1.20 Y 68 4 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.75 108.30 2.45 0.30 N 69 4 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 118.33 122.30 -3.97 0.60 N 70 4 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.57 122.90 -4.33 0.60 N 71 4 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 120.84 108.30 12.54 0.30 N 72 4 N1 A DG 11 ? ? C6 A DG 11 ? ? O6 A DG 11 ? ? 115.98 119.90 -3.92 0.60 N 73 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.94 108.30 5.64 0.30 N 74 5 N3 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 118.31 122.30 -3.99 0.60 N 75 5 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.28 122.90 -3.62 0.60 N 76 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.55 108.30 4.25 0.30 N 77 5 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 117.48 122.30 -4.82 0.60 N 78 5 "C3'" A DT 4 ? ? "O3'" A DT 4 ? ? P A DG 5 ? ? 127.46 119.70 7.76 1.20 Y 79 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.55 108.30 3.25 0.30 N 80 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.39 108.30 5.09 0.30 N 81 5 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.06 122.90 -3.84 0.60 N 82 5 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 128.05 119.70 8.35 1.20 Y 83 5 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 118.20 122.30 -4.10 0.60 N 84 5 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.11 122.90 -4.79 0.60 N 85 5 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 115.08 108.30 6.78 0.30 N 86 5 N1 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 116.20 119.90 -3.70 0.60 N 87 5 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DG 11 ? ? 127.26 119.70 7.56 1.20 Y 88 6 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.19 108.30 3.89 0.30 N 89 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.23 108.30 4.93 0.30 N 90 6 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 115.51 119.90 -4.39 0.70 N 91 6 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 127.42 119.70 7.72 1.20 Y 92 6 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.12 108.30 2.82 0.30 N 93 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 116.38 108.30 8.08 0.30 N 94 6 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 117.79 122.30 -4.51 0.60 N 95 6 "C3'" A DT 4 ? ? "O3'" A DT 4 ? ? P A DG 5 ? ? 128.13 119.70 8.43 1.20 Y 96 6 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.13 108.30 1.83 0.30 N 97 6 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 114.61 111.50 3.11 0.50 N 98 6 "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? P A DT 7 ? ? 127.29 119.70 7.59 1.20 Y 99 6 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.75 108.30 5.45 0.30 N 100 6 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.70 122.30 -3.60 0.60 N 101 6 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.99 122.90 -3.91 0.60 N 102 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 115.30 108.30 7.00 0.30 N 103 6 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.08 122.90 -3.82 0.60 N 104 6 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 113.83 108.30 5.53 0.30 N 105 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.91 108.30 4.61 0.30 N 106 7 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.53 108.30 3.23 0.30 N 107 7 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.91 108.30 3.61 0.30 N 108 7 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.15 122.90 -3.75 0.60 N 109 7 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 118.20 122.30 -4.10 0.60 N 110 7 "C3'" A DT 4 ? ? "O3'" A DT 4 ? ? P A DG 5 ? ? 128.58 119.70 8.88 1.20 Y 111 7 N3 A DG 5 ? ? C4 A DG 5 ? ? C5 A DG 5 ? ? 125.56 128.60 -3.04 0.50 N 112 7 N3 A DG 5 ? ? C2 A DG 5 ? ? N2 A DG 5 ? ? 115.37 119.90 -4.53 0.70 N 113 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.52 108.30 4.22 0.30 N 114 7 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.07 122.30 -4.23 0.60 N 115 7 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.92 122.90 -3.99 0.60 N 116 7 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DG 8 ? ? 126.92 119.70 7.22 1.20 Y 117 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.97 108.30 5.67 0.30 N 118 7 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 115.96 119.90 -3.94 0.60 N 119 7 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 117.80 122.90 -5.10 0.60 N 120 7 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 119.86 108.30 11.56 0.30 N 121 7 N1 A DG 11 ? ? C6 A DG 11 ? ? O6 A DG 11 ? ? 116.14 119.90 -3.76 0.60 N 122 8 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.92 108.30 3.62 0.30 N 123 8 N3 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 118.52 122.30 -3.78 0.60 N 124 8 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.13 108.30 3.83 0.30 N 125 8 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 117.75 122.30 -4.55 0.60 N 126 8 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.68 108.30 2.38 0.30 N 127 8 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DG 6 ? ? 126.98 119.70 7.28 1.20 Y 128 8 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.20 119.90 -3.70 0.60 N 129 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.46 108.30 5.16 0.30 N 130 8 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.27 122.30 -4.03 0.60 N 131 8 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.13 122.90 -3.77 0.60 N 132 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.17 108.30 2.87 0.30 N 133 8 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 115.83 119.90 -4.07 0.60 N 134 8 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 129.22 119.70 9.52 1.20 Y 135 8 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.64 108.30 2.34 0.30 N 136 8 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.25 122.90 -4.65 0.60 N 137 8 "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? "O4'" A DG 10 ? ? 116.42 109.80 6.62 1.10 N 138 8 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 121.40 108.30 13.10 0.30 N 139 8 N1 A DG 11 ? ? C6 A DG 11 ? ? O6 A DG 11 ? ? 115.64 119.90 -4.26 0.60 N 140 9 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.41 108.30 3.11 0.30 N 141 9 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.07 108.30 3.77 0.30 N 142 9 N3 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 118.45 122.30 -3.85 0.60 N 143 9 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.00 122.90 -3.90 0.60 N 144 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 115.35 108.30 7.05 0.30 N 145 9 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 118.60 122.30 -3.70 0.60 N 146 9 "C3'" A DT 4 ? ? "O3'" A DT 4 ? ? P A DG 5 ? ? 127.61 119.70 7.91 1.20 Y 147 9 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.01 108.30 2.71 0.30 N 148 9 "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? P A DT 7 ? ? 127.28 119.70 7.58 1.20 Y 149 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.57 108.30 4.27 0.30 N 150 9 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.53 122.30 -3.77 0.60 N 151 9 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.13 122.90 -3.77 0.60 N 152 9 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DG 8 ? ? 127.08 119.70 7.38 1.20 Y 153 9 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.77 108.30 4.47 0.30 N 154 9 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 116.09 119.90 -3.81 0.60 N 155 9 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 127.43 119.70 7.73 1.20 Y 156 9 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 118.57 122.30 -3.73 0.60 N 157 9 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 119.81 108.30 11.51 0.30 N 158 10 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.38 108.30 5.08 0.30 N 159 10 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 127.02 119.70 7.32 1.20 Y 160 10 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.13 122.90 -3.77 0.60 N 161 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 116.03 108.30 7.73 0.30 N 162 10 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 118.43 122.30 -3.87 0.60 N 163 10 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.27 122.90 -3.63 0.60 N 164 10 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.12 113.10 3.02 0.50 N 165 10 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DG 6 ? ? 127.67 119.70 7.97 1.20 Y 166 10 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 114.54 111.50 3.04 0.50 N 167 10 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 115.76 119.90 -4.14 0.60 N 168 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.29 108.30 3.99 0.30 N 169 10 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.34 122.30 -3.96 0.60 N 170 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.60 108.30 5.30 0.30 N 171 10 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 127.91 119.70 8.21 1.20 Y 172 10 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 118.02 122.30 -4.28 0.60 N 173 10 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.94 122.90 -3.96 0.60 N 174 10 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 120.57 108.30 12.27 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 2 ? ? 0.054 'SIDE CHAIN' 2 1 DT A 3 ? ? 0.102 'SIDE CHAIN' 3 1 DG A 5 ? ? 0.069 'SIDE CHAIN' 4 1 DG A 8 ? ? 0.120 'SIDE CHAIN' 5 1 DG A 10 ? ? 0.089 'SIDE CHAIN' 6 2 DT A 3 ? ? 0.127 'SIDE CHAIN' 7 2 DT A 4 ? ? 0.105 'SIDE CHAIN' 8 2 DG A 5 ? ? 0.060 'SIDE CHAIN' 9 2 DG A 6 ? ? 0.047 'SIDE CHAIN' 10 2 DG A 8 ? ? 0.108 'SIDE CHAIN' 11 2 DG A 10 ? ? 0.063 'SIDE CHAIN' 12 3 DG A 1 ? ? 0.055 'SIDE CHAIN' 13 3 DG A 2 ? ? 0.078 'SIDE CHAIN' 14 3 DT A 4 ? ? 0.116 'SIDE CHAIN' 15 3 DG A 6 ? ? 0.064 'SIDE CHAIN' 16 3 DT A 7 ? ? 0.073 'SIDE CHAIN' 17 3 DG A 8 ? ? 0.060 'SIDE CHAIN' 18 3 DT A 9 ? ? 0.079 'SIDE CHAIN' 19 3 DG A 10 ? ? 0.059 'SIDE CHAIN' 20 4 DG A 1 ? ? 0.052 'SIDE CHAIN' 21 4 DG A 6 ? ? 0.046 'SIDE CHAIN' 22 4 DG A 8 ? ? 0.090 'SIDE CHAIN' 23 4 DG A 10 ? ? 0.074 'SIDE CHAIN' 24 5 DT A 4 ? ? 0.067 'SIDE CHAIN' 25 5 DG A 5 ? ? 0.062 'SIDE CHAIN' 26 5 DG A 6 ? ? 0.065 'SIDE CHAIN' 27 5 DG A 8 ? ? 0.114 'SIDE CHAIN' 28 5 DG A 10 ? ? 0.048 'SIDE CHAIN' 29 6 DG A 2 ? ? 0.062 'SIDE CHAIN' 30 6 DG A 5 ? ? 0.072 'SIDE CHAIN' 31 6 DG A 8 ? ? 0.089 'SIDE CHAIN' 32 6 DT A 9 ? ? 0.085 'SIDE CHAIN' 33 6 DG A 11 ? ? 0.059 'SIDE CHAIN' 34 7 DG A 2 ? ? 0.068 'SIDE CHAIN' 35 7 DG A 8 ? ? 0.063 'SIDE CHAIN' 36 7 DT A 9 ? ? 0.082 'SIDE CHAIN' 37 7 DG A 10 ? ? 0.093 'SIDE CHAIN' 38 8 DG A 1 ? ? 0.047 'SIDE CHAIN' 39 8 DG A 8 ? ? 0.076 'SIDE CHAIN' 40 8 DG A 10 ? ? 0.078 'SIDE CHAIN' 41 9 DG A 2 ? ? 0.056 'SIDE CHAIN' 42 9 DT A 4 ? ? 0.163 'SIDE CHAIN' 43 9 DG A 10 ? ? 0.066 'SIDE CHAIN' 44 10 DT A 3 ? ? 0.093 'SIDE CHAIN' 45 10 DT A 4 ? ? 0.133 'SIDE CHAIN' 46 10 DG A 8 ? ? 0.084 'SIDE CHAIN' 47 10 DG A 10 ? ? 0.077 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MKO 'double helix' 2MKO 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DG 6 1_555 2.027 2.965 0.657 -4.220 0.199 -92.745 1 A_DG1:DG6_A A 1 ? A 6 ? 6 3 1 A DG 11 1_555 A DG 5 1_555 2.345 2.993 0.144 -3.255 23.704 -86.286 2 A_DG11:DG5_A A 11 ? A 5 ? 6 3 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 DG _ndb_struct_na_base_pair_step.i_label_seq_id_1 1 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 A _ndb_struct_na_base_pair_step.j_label_comp_id_1 DG _ndb_struct_na_base_pair_step.j_label_seq_id_1 6 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 DG _ndb_struct_na_base_pair_step.i_label_seq_id_2 11 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 A _ndb_struct_na_base_pair_step.j_label_comp_id_2 DG _ndb_struct_na_base_pair_step.j_label_seq_id_2 5 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift -0.930 _ndb_struct_na_base_pair_step.slide -3.314 _ndb_struct_na_base_pair_step.rise 1.170 _ndb_struct_na_base_pair_step.tilt 162.864 _ndb_struct_na_base_pair_step.roll -36.760 _ndb_struct_na_base_pair_step.twist 144.296 _ndb_struct_na_base_pair_step.x_displacement -1.619 _ndb_struct_na_base_pair_step.y_displacement 0.635 _ndb_struct_na_base_pair_step.helical_rise 1.060 _ndb_struct_na_base_pair_step.inclination -18.448 _ndb_struct_na_base_pair_step.tip -81.736 _ndb_struct_na_base_pair_step.helical_twist 176.011 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name AA_DG1DG11:DG5DG6_AA _ndb_struct_na_base_pair_step.i_auth_asym_id_1 A _ndb_struct_na_base_pair_step.i_auth_seq_id_1 1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 A _ndb_struct_na_base_pair_step.j_auth_seq_id_1 6 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 A _ndb_struct_na_base_pair_step.i_auth_seq_id_2 11 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 A _ndb_struct_na_base_pair_step.j_auth_seq_id_2 5 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'POTASSIUM ION' _pdbx_entity_nonpoly.comp_id K #