HEADER VIRAL PROTEIN/TRANSCRIPTION 12-FEB-14 2MKR TITLE STRUCTURAL CHARACTERIZATION OF A COMPLEX BETWEEN THE ACIDIC TITLE 2 TRANSACTIVATION DOMAIN OF EBNA2 AND THE TFB1/P62 SUBUNIT OF TFIIH. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH SUBUNIT COMPND 5 TFB1, TFIIH SUBUNIT TFB1, RNA POLYMERASE II TRANSCRIPTION FACTOR B 73 COMPND 6 KDA SUBUNIT, RNA POLYMERASE II TRANSCRIPTION FACTOR B P73 SUBUNIT; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: EPSTEIN-BARR NUCLEAR ANTIGEN 2; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: EBNA-2, EBV NUCLEAR ANTIGEN 2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: D9740.3, TFB1, YDR311W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-2T; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 13 ORGANISM_COMMON: HHV-4; SOURCE 14 ORGANISM_TAXID: 10377; SOURCE 15 STRAIN: B95-8; SOURCE 16 GENE: BYRF1, EBNA2; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PGEX-2T KEYWDS EBV, EBNA2, TFIIH, TFB1, ACTIVATION, TRANSCRIPTION, PH DOMAIN, VIRAL KEYWDS 2 PROTEIN-TRANSCRIPTION COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.R.CHABOT,L.RAIOLA,M.LUSSIER-PRICE,T.MORSE,G.ARSENEAULT, AUTHOR 2 J.ARCHAMBAULT,J.OMICHINSKI REVDAT 4 14-JUN-23 2MKR 1 SEQADV REVDAT 3 09-APR-14 2MKR 1 JRNL REVDAT 2 12-MAR-14 2MKR 1 HEADER HELIX KEYWDS SHEET REVDAT 1 05-MAR-14 2MKR 0 JRNL AUTH P.R.CHABOT,L.RAIOLA,M.LUSSIER-PRICE,T.MORSE,G.ARSENEAULT, JRNL AUTH 2 J.ARCHAMBAULT,J.G.OMICHINSKI JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A COMPLEX JRNL TITL 2 BETWEEN THE ACIDIC TRANSACTIVATION DOMAIN OF EBNA2 AND THE JRNL TITL 3 TFB1/P62 SUBUNIT OF TFIIH. JRNL REF PLOS PATHOG. V. 10 04042 2014 JRNL REFN ISSN 1553-7366 JRNL PMID 24675874 JRNL DOI 10.1371/JOURNAL.PPAT.1004042 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG, REMARK 3 KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000103732. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-13C; U-15N] TFB1, 2.1 REMARK 210 MM EBNA2, 20 MM SODIUM PHOSPHATE, REMARK 210 1 MM DTT, 90% H2O/10% D2O; 0.7 REMARK 210 MM [U-15N] TFB1, 2.1 MM EBNA2, REMARK 210 20 MM SODIUM PHOSPHATE, 1 MM DTT, REMARK 210 90% H2O/10% D2O; 0.7 MM [U-13C; REMARK 210 U-15N] TFB1, 2.1 MM EBNA2, 20 MM REMARK 210 SODIUM PHOSPHATE, 1 MM DTT, 100% REMARK 210 D2O; 0.5 MM [U-13C; U-15N] EBNA2, REMARK 210 1.5 MM TFB1, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM DTT, 90% H2O/10% REMARK 210 D2O; 0.5 MM [U-100% 15N] EBNA2, REMARK 210 1.5 MM TFB1, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM DTT, 90% H2O/10% REMARK 210 D2O; 0.5 MM [U-13C; U-15N] EBNA2, REMARK 210 1.5 MM TFB1, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM DTT-24, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 3D 1H-13C- REMARK 210 12C INTERMOLECULAR NOESY; 3D REMARK 210 HNCO; 3D HNCACB; 3D HCCH-TOCSY; REMARK 210 3D H(CCO)NH; 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR, TALOS TALOS-N, VNMR REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 87.99 60.43 REMARK 500 1 GLU A 20 31.40 -98.63 REMARK 500 1 ALA A 25 -172.31 61.35 REMARK 500 1 ASP A 35 -40.20 -176.90 REMARK 500 1 GLU A 68 46.57 -93.73 REMARK 500 1 LYS A 73 54.62 -113.91 REMARK 500 1 ASP A 74 -163.12 40.66 REMARK 500 1 ASN A 78 99.87 71.78 REMARK 500 1 GLU A 79 58.99 -112.27 REMARK 500 1 ASN A 93 133.61 -173.49 REMARK 500 2 HIS A 3 75.04 59.99 REMARK 500 2 ALA A 6 95.62 -62.57 REMARK 500 2 ALA A 25 148.05 64.05 REMARK 500 2 ASP A 35 36.13 -162.26 REMARK 500 2 ASP A 46 -54.77 -120.62 REMARK 500 2 LYS A 57 85.04 -67.49 REMARK 500 2 GLU A 76 36.19 -146.92 REMARK 500 2 ASN A 78 129.36 -177.32 REMARK 500 2 LYS A 83 137.87 63.07 REMARK 500 2 PRO A 84 -168.22 -76.87 REMARK 500 2 ASN A 92 31.41 -144.19 REMARK 500 2 THR B 464 79.05 -100.04 REMARK 500 3 SER A 2 -79.82 62.97 REMARK 500 3 ALA A 6 96.61 -63.19 REMARK 500 3 PRO A 24 81.31 -69.20 REMARK 500 3 ASP A 46 -54.43 -124.59 REMARK 500 3 LYS A 71 126.92 63.64 REMARK 500 3 ARG A 72 124.22 63.22 REMARK 500 3 LYS A 73 113.91 61.61 REMARK 500 3 ASN A 75 -69.76 -146.90 REMARK 500 3 GLU A 76 116.94 -174.82 REMARK 500 3 ASN A 78 111.11 60.76 REMARK 500 3 PRO A 82 88.58 -40.70 REMARK 500 3 PRO A 84 -178.34 -53.26 REMARK 500 3 ASN A 93 142.76 -172.42 REMARK 500 3 ALA A 114 -70.19 -88.76 REMARK 500 4 HIS A 3 85.93 59.88 REMARK 500 4 SER A 4 131.95 -176.71 REMARK 500 4 ALA A 25 150.00 62.87 REMARK 500 4 ASP A 46 -50.26 -124.92 REMARK 500 4 ASP A 67 91.17 61.49 REMARK 500 4 GLU A 68 -74.61 -132.64 REMARK 500 4 LYS A 70 -45.88 -158.77 REMARK 500 4 LYS A 71 -167.53 45.36 REMARK 500 4 LYS A 73 130.79 64.18 REMARK 500 4 ASP A 74 31.04 -97.35 REMARK 500 4 ASN A 75 106.33 58.71 REMARK 500 4 GLU A 76 91.77 59.44 REMARK 500 4 ASN A 78 103.63 65.92 REMARK 500 4 GLU A 79 69.34 -157.23 REMARK 500 REMARK 500 THIS ENTRY HAS 248 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19791 RELATED DB: BMRB DBREF 2MKR A 1 115 UNP P32776 TFB1_YEAST 1 115 DBREF 2MKR B 453 465 UNP P12978 EBNA2_EBVB9 453 465 SEQADV 2MKR PRO A 1 UNP P32776 MET 1 ENGINEERED MUTATION SEQRES 1 A 115 PRO SER HIS SER GLY ALA ALA ILE PHE GLU LYS VAL SER SEQRES 2 A 115 GLY ILE ILE ALA ILE ASN GLU ASP VAL SER PRO ALA GLU SEQRES 3 A 115 LEU THR TRP ARG SER THR ASP GLY ASP LYS VAL HIS THR SEQRES 4 A 115 VAL VAL LEU SER THR ILE ASP LYS LEU GLN ALA THR PRO SEQRES 5 A 115 ALA SER SER GLU LYS MET MET LEU ARG LEU ILE GLY LYS SEQRES 6 A 115 VAL ASP GLU SER LYS LYS ARG LYS ASP ASN GLU GLY ASN SEQRES 7 A 115 GLU VAL VAL PRO LYS PRO GLN ARG HIS MET PHE SER PHE SEQRES 8 A 115 ASN ASN ARG THR VAL MET ASP ASN ILE LYS MET THR LEU SEQRES 9 A 115 GLN GLN ILE ILE SER ARG TYR LYS ASP ALA ASP SEQRES 1 B 13 ASP LEU ASP GLU SER TRP ASP TYR ILE PHE GLU THR THR HELIX 1 1 ASN A 93 ASP A 113 1 21 HELIX 2 2 ASP B 455 GLU B 463 1 9 SHEET 1 A 4 SER A 4 PHE A 9 0 SHEET 2 A 4 VAL A 12 ASN A 19 -1 O ILE A 16 N GLY A 5 SHEET 3 A 4 GLU A 26 SER A 31 -1 O THR A 28 N ALA A 17 SHEET 4 A 4 VAL A 37 VAL A 40 -1 O HIS A 38 N TRP A 29 SHEET 1 B 3 ASP A 46 ALA A 50 0 SHEET 2 B 3 MET A 59 GLY A 64 -1 O ILE A 63 N ASP A 46 SHEET 3 B 3 ARG A 86 SER A 90 -1 O HIS A 87 N LEU A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1