HEADER HYDROLASE 14-FEB-14 2MKX TITLE SOLUTION STRUCTURE OF LYSM THE PEPTIDOGLYCAN BINDING DOMAIN OF TITLE 2 AUTOLYSIN ATLA FROM ENTEROCOCCUS FAECALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOLYSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LYSM PEPTIDOGLYCAN BINDING DOMAIN OF AUTOLYSIN ATLA; COMPND 5 SYNONYM: BETA-GLYCOSIDASE, PEPTIDOGLYCAN HYDROLASE; COMPND 6 EC: 3.2.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: ATCC 700802 / V583; SOURCE 5 GENE: EF_0799; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PML520 KEYWDS PROTEIN, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR N.J.BAXTER,M.P.WILLIAMSON REVDAT 3 14-JUN-23 2MKX 1 REMARK SEQADV REVDAT 2 16-JUL-14 2MKX 1 JRNL REVDAT 1 18-JUN-14 2MKX 0 JRNL AUTH S.MESNAGE,M.DELLAROLE,N.J.BAXTER,J.B.ROUGET,J.D.DIMITROV, JRNL AUTH 2 N.WANG,Y.FUJIMOTO,A.M.HOUNSLOW,S.LACROIX-DESMAZES,K.FUKASE, JRNL AUTH 3 S.J.FOSTER,M.P.WILLIAMSON JRNL TITL MOLECULAR BASIS FOR BACTERIAL PEPTIDOGLYCAN RECOGNITION BY JRNL TITL 2 LYSM DOMAINS. JRNL REF NAT COMMUN V. 5 4269 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 24978025 JRNL DOI 10.1038/NCOMMS5269 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 2007, CNS 1.21 REMARK 3 AUTHORS : ACCELRYS SOFTWARE INC. (FELIX), BRUNGER, ADAMS, REMARK 3 CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN EXPLICIT WATERS USING ARIA PROTOCOL REMARK 4 REMARK 4 2MKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000103738. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 40 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 LYSM, 40 MM POTASSIUM PHOSPHATE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D 1H- REMARK 210 15N TOCSY; 2D 1H-13C HSQC; 3D REMARK 210 HCCH-TOCSY; 3D CCH-TOCSY; 3D 1H- REMARK 210 15N/13C NOESY ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 2D H(N)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2007, CNS 1.21, TOPSPIN REMARK 210 1.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 0 REMARK 465 HIS A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 465 HIS A 55 REMARK 465 HIS A 56 REMARK 465 HIS A 57 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 12 -3.34 -52.93 REMARK 500 2 ASP A 37 65.41 -115.71 REMARK 500 3 ASN A 3 126.49 -171.51 REMARK 500 3 SER A 10 -18.35 -44.04 REMARK 500 4 SER A 10 -17.77 -42.82 REMARK 500 4 ASP A 37 60.34 -115.50 REMARK 500 5 SER A 10 -17.69 -43.87 REMARK 500 5 ASP A 12 -3.43 -57.58 REMARK 500 5 LEU A 38 35.56 -96.78 REMARK 500 6 ASP A 12 -1.30 -59.27 REMARK 500 7 ASP A 12 0.09 -59.84 REMARK 500 8 ASP A 12 -2.64 -52.93 REMARK 500 8 LEU A 38 38.44 -96.24 REMARK 500 9 ASP A 12 -1.88 -53.79 REMARK 500 9 LYS A 48 118.21 178.51 REMARK 500 10 SER A 10 68.41 -57.56 REMARK 500 10 ASP A 12 -0.26 -52.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19799 RELATED DB: BMRB DBREF 2MKX A 1 50 UNP P37710 ALYS_ENTFA 358 407 SEQADV 2MKX MET A 0 UNP P37710 EXPRESSION TAG SEQADV 2MKX SER A 51 UNP P37710 EXPRESSION TAG SEQADV 2MKX HIS A 52 UNP P37710 EXPRESSION TAG SEQADV 2MKX HIS A 53 UNP P37710 EXPRESSION TAG SEQADV 2MKX HIS A 54 UNP P37710 EXPRESSION TAG SEQADV 2MKX HIS A 55 UNP P37710 EXPRESSION TAG SEQADV 2MKX HIS A 56 UNP P37710 EXPRESSION TAG SEQADV 2MKX HIS A 57 UNP P37710 EXPRESSION TAG SEQRES 1 A 58 MET GLY THR ASN THR TYR TYR THR VAL LYS SER GLY ASP SEQRES 2 A 58 THR LEU ASN LYS ILE ALA ALA GLN TYR GLY VAL SER VAL SEQRES 3 A 58 ALA ASN LEU ARG SER TRP ASN GLY ILE SER GLY ASP LEU SEQRES 4 A 58 ILE PHE VAL GLY GLN LYS LEU ILE VAL LYS LYS GLY SER SEQRES 5 A 58 HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 13 GLY A 22 1 10 HELIX 2 2 SER A 24 GLY A 33 1 10 SHEET 1 A 2 THR A 4 THR A 7 0 SHEET 2 A 2 LYS A 44 VAL A 47 -1 O LEU A 45 N TYR A 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1