HEADER CELL INVASION 14-FEB-14 2MKY TITLE STRUCTURE OF THE PRGK FIRST PERIPLASMIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PATHOGENICITY 1 ISLAND EFFECTOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-76; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA; SOURCE 3 ORGANISM_TAXID: 568709; SOURCE 4 STRAIN: SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. DT2; SOURCE 5 GENE: PRGK, STMDT2_27711; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS SECRETION SYSTEMS, MACROMOLECULAR ASSEMBLIES, CELL INVASION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.BERGERON,L.MCINTOSH,N.STRYNADKA REVDAT 2 11-FEB-15 2MKY 1 JRNL REVDAT 1 29-OCT-14 2MKY 0 JRNL AUTH J.R.BERGERON,L.J.WORRALL,S.DE,N.G.SGOURAKIS,A.H.CHEUNG, JRNL AUTH 2 E.LAMEIGNERE,M.OKON,G.A.WASNEY,D.BAKER,L.P.MCINTOSH, JRNL AUTH 3 N.C.STRYNADKA JRNL TITL THE MODULAR STRUCTURE OF THE INNER-MEMBRANE RING COMPONENT JRNL TITL 2 PRGK FACILITATES ASSEMBLY OF THE TYPE III SECRETION SYSTEM JRNL TITL 3 BASAL BODY. JRNL REF STRUCTURE V. 23 161 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25533490 JRNL DOI 10.1016/J.STR.2014.10.021 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CNS REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MKY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-14. REMARK 100 THE RCSB ID CODE IS RCSB103739. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PRGK, 10 % D2O, 25 MM HEPES, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY; 3D HCACO; 3D H(CCO) REMARK 210 NH; 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H-15N REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 45 98.23 -56.57 REMARK 500 3 ASP A 20 27.52 -161.39 REMARK 500 4 ASP A 20 25.35 -168.46 REMARK 500 4 LEU A 23 -62.45 -90.23 REMARK 500 6 GLU A 45 100.46 -54.26 REMARK 500 7 ASP A 20 34.35 -148.21 REMARK 500 9 ASP A 20 82.99 -67.16 REMARK 500 10 ASP A 20 -51.08 68.15 REMARK 500 11 GLU A 45 104.81 -54.56 REMARK 500 13 ASP A 20 29.50 -150.63 REMARK 500 15 ASP A 20 69.20 38.85 REMARK 500 15 LEU A 23 -61.37 -96.13 REMARK 500 17 ASP A 20 83.37 64.37 REMARK 500 17 LEU A 23 -61.54 -102.64 REMARK 500 17 GLU A 45 97.61 -67.24 REMARK 500 20 LYS A 25 117.12 -168.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19800 RELATED DB: BMRB DBREF 2MKY A 19 76 UNP U4MER0 U4MER0_SALTM 19 76 SEQRES 1 A 58 LYS ASP LYS ASP LEU LEU LYS GLY LEU ASP GLN GLU GLN SEQRES 2 A 58 ALA ASN GLU VAL ILE ALA VAL LEU GLN MET HIS ASN ILE SEQRES 3 A 58 GLU ALA ASN LYS ILE ASP SER GLY LYS LEU GLY TYR SER SEQRES 4 A 58 ILE THR VAL ALA GLU PRO ASP PHE THR ALA ALA VAL TYR SEQRES 5 A 58 TRP ILE LYS THR TYR GLN HELIX 1 1 ASP A 28 HIS A 42 1 15 HELIX 2 2 ASP A 64 LYS A 73 1 10 HELIX 3 3 THR A 74 GLN A 76 5 3 SHEET 1 A 2 ALA A 46 SER A 51 0 SHEET 2 A 2 GLY A 55 VAL A 60 -1 O THR A 59 N ASN A 47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1