HEADER SIGNALING PROTEIN 02-MAR-14 2MLK TITLE THREE-DIMENSIONAL STRUCTURE OF THE C-TERMINAL DNA-BINDING DOMAIN OF TITLE 2 RSTA PROTEIN FROM KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RSTA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN (UNP RESIDUES 131-239); COMPND 5 SYNONYM: TRANSCRIPTIONAL REGULATOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: D364_07465; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS TWO COMPONENT SYSTEMS, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.FANG,S.CHEN,Y.CHENG,C.CHANG,T.YU,T.HUANG REVDAT 3 14-JUN-23 2MLK 1 REMARK SEQADV REVDAT 2 13-AUG-14 2MLK 1 JRNL REVDAT 1 16-JUL-14 2MLK 0 JRNL AUTH Y.C.LI,C.K.CHANG,C.F.CHANG,Y.H.CHENG,P.J.FANG,T.YU,S.C.CHEN, JRNL AUTH 2 Y.C.LI,C.D.HSIAO,T.H.HUANG JRNL TITL STRUCTURAL DYNAMICS OF THE TWO-COMPONENT RESPONSE REGULATOR JRNL TITL 2 RSTA IN RECOGNITION OF PROMOTER DNA ELEMENT. JRNL REF NUCLEIC ACIDS RES. V. 42 8777 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24990372 JRNL DOI 10.1093/NAR/GKU572 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.C.CHEN,C.F.CHANG,P.J.FAN,Y.H.CHENG,T.YU,T.H.HUANG REMARK 1 TITL (1)H, (13)C AND (15)N RESONANCE ASSIGNMENTS OF THE REMARK 1 TITL 2 C-TERMINAL DNA-BINDING DOMAIN OF RSTA PROTEIN FROM REMARK 1 TITL 3 KLEBSIELLA PNEUMONIAE. REMARK 1 REF BIOMOL.NMR ASSIGN. V. 7 85 2013 REMARK 1 REFN ISSN 1874-2718 REMARK 1 PMID 22481468 REMARK 1 DOI 10.1007/S12104-012-9383-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CARA, CYANA REMARK 3 AUTHORS : KELLER AND WUTHRICH (CARA), GUNTERT, MUMENTHALER REMARK 3 AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000103761. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.1-1.0 MM [U-13C; U-15N] REMARK 210 RSTA_C, 90% H2O/10% D2O; 1.0 MM REMARK 210 [U-13C; U-15N] RSTA_C, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCO; 3D HNCACO; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HCCH- REMARK 210 TOCSY; 3D HBHA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 ALA A 128 REMARK 465 MET A 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 134 -178.69 -69.78 REMARK 500 1 SER A 142 -65.72 -128.75 REMARK 500 1 HIS A 175 44.26 -109.99 REMARK 500 1 ARG A 190 -70.33 -95.37 REMARK 500 1 MET A 197 43.66 -104.07 REMARK 500 1 LEU A 213 43.86 -79.11 REMARK 500 1 ASN A 215 -55.98 -135.03 REMARK 500 1 PRO A 219 -165.79 -69.73 REMARK 500 1 ILE A 222 79.30 -66.94 REMARK 500 1 ARG A 226 86.43 -52.79 REMARK 500 1 ASN A 227 37.53 34.56 REMARK 500 2 HIS A 175 42.26 -104.26 REMARK 500 2 LEU A 213 40.69 -78.31 REMARK 500 2 ASN A 215 -38.59 -134.98 REMARK 500 2 PRO A 219 -165.85 -69.75 REMARK 500 2 TYR A 220 62.88 -101.50 REMARK 500 2 ARG A 221 -38.00 -39.50 REMARK 500 2 ARG A 226 91.25 -46.74 REMARK 500 2 ASN A 227 36.89 34.92 REMARK 500 2 ASP A 238 -175.82 -60.58 REMARK 500 3 HIS A 135 112.79 -169.62 REMARK 500 3 HIS A 175 38.43 -94.67 REMARK 500 3 ARG A 190 -55.92 -127.05 REMARK 500 3 MET A 197 42.04 -92.72 REMARK 500 3 ASN A 215 -56.73 -134.84 REMARK 500 3 PRO A 219 -165.00 -69.78 REMARK 500 3 ARG A 221 -171.58 -53.06 REMARK 500 3 ARG A 226 85.32 -51.32 REMARK 500 3 ASN A 227 38.56 36.55 REMARK 500 4 PRO A 134 -171.47 -69.76 REMARK 500 4 HIS A 175 43.85 -105.65 REMARK 500 4 MET A 197 43.23 -108.24 REMARK 500 4 LEU A 213 48.66 -75.91 REMARK 500 4 PRO A 219 67.24 -69.79 REMARK 500 4 ARG A 221 158.53 -43.79 REMARK 500 4 ARG A 226 85.26 -49.56 REMARK 500 4 ASN A 227 36.00 34.37 REMARK 500 4 TRP A 237 -176.95 -60.41 REMARK 500 5 MET A 197 48.06 -109.93 REMARK 500 5 LEU A 213 42.04 -80.94 REMARK 500 5 ASN A 215 -39.33 -134.95 REMARK 500 5 PRO A 219 -176.82 -69.78 REMARK 500 5 ARG A 226 85.83 -50.69 REMARK 500 5 ASN A 227 38.03 35.53 REMARK 500 5 ALA A 236 -72.10 -51.90 REMARK 500 6 ARG A 150 47.69 32.71 REMARK 500 6 ARG A 190 -68.81 -106.75 REMARK 500 6 MET A 197 42.86 -94.18 REMARK 500 6 ASN A 215 -40.38 -134.97 REMARK 500 6 PRO A 219 -170.66 -69.75 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18200 RELATED DB: BMRB DBREF 2MLK A 131 239 UNP U5MDD9 U5MDD9_KLEPN 131 239 SEQADV 2MLK MET A 121 UNP U5MDD9 EXPRESSION TAG SEQADV 2MLK HIS A 122 UNP U5MDD9 EXPRESSION TAG SEQADV 2MLK HIS A 123 UNP U5MDD9 EXPRESSION TAG SEQADV 2MLK HIS A 124 UNP U5MDD9 EXPRESSION TAG SEQADV 2MLK HIS A 125 UNP U5MDD9 EXPRESSION TAG SEQADV 2MLK HIS A 126 UNP U5MDD9 EXPRESSION TAG SEQADV 2MLK HIS A 127 UNP U5MDD9 EXPRESSION TAG SEQADV 2MLK ALA A 128 UNP U5MDD9 EXPRESSION TAG SEQADV 2MLK MET A 129 UNP U5MDD9 EXPRESSION TAG SEQADV 2MLK GLY A 130 UNP U5MDD9 EXPRESSION TAG SEQRES 1 A 119 MET HIS HIS HIS HIS HIS HIS ALA MET GLY THR LEU THR SEQRES 2 A 119 PRO HIS LYS THR ILE SER PHE GLY SER LEU THR ILE ASP SEQRES 3 A 119 PRO VAL ASN ARG GLN VAL LEU LEU GLY GLY GLU ASN VAL SEQRES 4 A 119 ALA LEU SER THR ALA ASP PHE ASP LEU LEU TRP GLU LEU SEQRES 5 A 119 ALA THR HIS ALA GLY GLN ILE MET ASP ARG ASP ALA LEU SEQRES 6 A 119 LEU LYS ASN LEU ARG GLY VAL THR TYR ASP GLY MET ASP SEQRES 7 A 119 ARG SER VAL ASP VAL ALA ILE SER ARG LEU ARG LYS LYS SEQRES 8 A 119 LEU LEU ASP ASN ALA THR GLU PRO TYR ARG ILE LYS THR SEQRES 9 A 119 VAL ARG ASN LYS GLY TYR LEU PHE ALA PRO HIS ALA TRP SEQRES 10 A 119 ASP ASN HELIX 1 1 SER A 162 HIS A 175 1 14 HELIX 2 2 ASP A 181 ARG A 190 1 10 HELIX 3 3 MET A 197 LEU A 212 1 16 SHEET 1 A 4 ILE A 138 SER A 139 0 SHEET 2 A 4 LEU A 143 ASP A 146 -1 O ILE A 145 N ILE A 138 SHEET 3 A 4 GLN A 151 LEU A 154 -1 O LEU A 153 N THR A 144 SHEET 4 A 4 GLU A 157 ASN A 158 -1 O GLU A 157 N LEU A 154 SHEET 1 B 2 LYS A 223 THR A 224 0 SHEET 2 B 2 TYR A 230 LEU A 231 -1 O LEU A 231 N LYS A 223 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1