HEADER GENE REGULATION 13-MAR-14 2MMA TITLE NMR-BASED DOCKING MODEL OF GRXS14-BOLA2 APO-HETERODIMER FROM TITLE 2 ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOTHIOL GLUTAREDOXIN-S14, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 67-173; COMPND 5 SYNONYM: ATGRXCP, ATGRXS14, CAX-INTERACTING PROTEIN 1, CXIP1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BOLA2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 2-81; COMPND 11 SYNONYM: BOLA-LIKE FAMILY PROTEIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: GRXS14, CXIP1, AT3G54900, F28P10.120; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 12 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 13 ORGANISM_TAXID: 3702; SOURCE 14 GENE: AT5G09830, AT5G09830; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS STRESS-RESPONSIVE PROTEIN, TRANSCRIPTIONAL REGULATOR, GENE REGULATION EXPDTA SOLUTION NMR AUTHOR T.RORET,P.TSAN,J.COUTURIER,N.ROUHIER,C.DIDIERJEAN REVDAT 4 01-MAY-24 2MMA 1 REMARK REVDAT 3 27-APR-16 2MMA 1 ATOM DBREF REMARK SEQRES REVDAT 2 17-SEP-14 2MMA 1 JRNL REVDAT 1 23-JUL-14 2MMA 0 JRNL AUTH T.RORET,P.TSAN,J.COUTURIER,B.ZHANG,M.K.JOHNSON,N.ROUHIER, JRNL AUTH 2 C.DIDIERJEAN JRNL TITL STRUCTURAL AND SPECTROSCOPIC INSIGHTS INTO BOLA-GLUTAREDOXIN JRNL TITL 2 COMPLEXES. JRNL REF J.BIOL.CHEM. V. 289 24588 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25012657 JRNL DOI 10.1074/JBC.M114.572701 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, YASARA_ENERGY_MINIMIZATION_SERVER, GRAMM REMARK 3 -X_PROTEIN-PROTEIN_DOCKING_WEB_SERVER REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), KRIEGER REMARK 3 (YASARA_ENERGY_MINIMIZATION_SERVER), TOVCHIGRECHKO REMARK 3 (GRAMM-X_PROTEIN-PROTEIN_DOCKING_WEB_SERVER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ENERGY MINIMIZATION USING THE YASARA REMARK 3 FORCE FIELD. THE STRUCTURE WAS MOVED TO A NEARBY (LOCAL) MINIMUM, REMARK 3 WITH REMOVAL OF CLASHES AND SMALL ERRORS. REMARK 4 REMARK 4 2MMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000103783. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.12 MM [U-100% 15N] BOLA2, REMARK 210 0.012-0.24 MM GRXS14, 90% H2O/10% REMARK 210 D2O; 0.12 MM [U-100% 15N] REMARK 210 GRXS14, 0.012-0.24 MM BOLA2, 90% REMARK 210 H2O/10% D2O; 0.12 MM [U-100% 15N] REMARK 210 GRXS14, 90% H2O/10% D2O; 0.12 REMARK 210 MM [U-100% 15N] BOLA2, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, GRAMM-X_PROTEIN REMARK 210 -PROTEIN_DOCKING_WEB_SERVER 1.2.0, YASARA_ENERGY_MINIMIZATION_ REMARK 210 SERVER REMARK 210 METHOD USED : MOLECULAR DYNAMICS, ENERGY REMARK 210 MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 SER A 65 REMARK 465 ALA A 66 REMARK 465 PRO B 82 REMARK 465 SER B 83 REMARK 465 GLN B 84 REMARK 465 ASP B 85 REMARK 465 SER B 86 REMARK 465 ALA B 87 REMARK 465 THR B 88 REMARK 465 LEU B 89 REMARK 465 THR B 90 REMARK 465 LYS B 91 REMARK 465 ASP B 92 REMARK 465 ALA B 93 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 46 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 52 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 73 55.42 -143.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19850 RELATED DB: BMRB REMARK 900 RELATED ID: 3IPZ RELATED DB: PDB REMARK 900 RELATED ID: 2MM9 RELATED DB: PDB DBREF 2MMA A 65 173 UNP Q84Y95 GRS14_ARATH 65 173 DBREF 2MMA B 2 93 UNP Q9FIC3 Q9FIC3_ARATH 2 93 SEQRES 1 A 109 SER ALA LEU THR PRO GLN LEU LYS ASP THR LEU GLU LYS SEQRES 2 A 109 LEU VAL ASN SER GLU LYS VAL VAL LEU PHE MET LYS GLY SEQRES 3 A 109 THR ARG ASP PHE PRO MET CYS GLY PHE SER ASN THR VAL SEQRES 4 A 109 VAL GLN ILE LEU LYS ASN LEU ASN VAL PRO PHE GLU ASP SEQRES 5 A 109 VAL ASN ILE LEU GLU ASN GLU MET LEU ARG GLN GLY LEU SEQRES 6 A 109 LYS GLU TYR SER ASN TRP PRO THR PHE PRO GLN LEU TYR SEQRES 7 A 109 ILE GLY GLY GLU PHE PHE GLY GLY CYS ASP ILE THR LEU SEQRES 8 A 109 GLU ALA PHE LYS THR GLY GLU LEU GLN GLU GLU VAL GLU SEQRES 9 A 109 LYS ALA MET CYS SER SEQRES 1 B 92 VAL THR LYS GLU GLN VAL GLU ALA SER LEU THR SER LYS SEQRES 2 B 92 LEU LYS PRO ILE HIS LEU GLU VAL ILE ASP ILE SER GLY SEQRES 3 B 92 GLY CYS GLY SER SER PHE GLU VAL GLU VAL VAL SER GLU SEQRES 4 B 92 GLN PHE GLU GLY LYS ARG LEU LEU GLU ARG HIS ARG MET SEQRES 5 B 92 VAL ASN ALA ALA LEU GLU GLU GLU MET LYS GLU ILE HIS SEQRES 6 B 92 ALA LEU SER ILE LYS LYS ALA GLN THR PRO GLN GLN TRP SEQRES 7 B 92 LYS PRO PRO SER GLN ASP SER ALA THR LEU THR LYS ASP SEQRES 8 B 92 ALA HELIX 1 1 THR A 68 SER A 81 1 14 HELIX 2 2 CYS A 97 LEU A 110 1 14 HELIX 3 3 ASN A 122 SER A 133 1 12 HELIX 4 4 CYS A 151 GLY A 161 1 11 HELIX 5 5 GLY A 161 SER A 173 1 13 HELIX 6 6 THR B 3 LYS B 16 1 14 HELIX 7 7 GLU B 40 GLU B 43 5 4 HELIX 8 8 ARG B 46 LEU B 58 1 13 HELIX 9 9 LEU B 58 LYS B 63 1 6 HELIX 10 10 THR B 75 LYS B 80 1 6 SHEET 1 A 4 GLU A 115 ASN A 118 0 SHEET 2 A 4 VAL A 84 MET A 88 1 N LEU A 86 O GLU A 115 SHEET 3 A 4 GLN A 140 ILE A 143 -1 O TYR A 142 N VAL A 85 SHEET 4 A 4 GLU A 146 GLY A 150 -1 O GLY A 149 N LEU A 141 SHEET 1 B 3 HIS B 19 ASP B 24 0 SHEET 2 B 3 SER B 32 VAL B 38 -1 O GLU B 34 N ILE B 23 SHEET 3 B 3 ALA B 67 GLN B 74 1 O LYS B 71 N VAL B 35 CISPEP 1 PHE A 138 PRO A 139 0 4.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000