HEADER RIBOSOMAL PROTEIN 17-MAR-14 2MMP TITLE SOLUTION STRUCTURE OF A RIBOSOMAL PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET30A KEYWDS RIBOSOMAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.FENG REVDAT 3 14-JUN-23 2MMP 1 REMARK REVDAT 2 24-AUG-22 2MMP 1 JRNL REMARK REVDAT 1 11-JUN-14 2MMP 0 JRNL AUTH Y.FENG,X.SONG,J.LIN,J.XUAN,Q.CUI,J.WANG JRNL TITL STRUCTURE DETERMINATION OF ARCHAEA-SPECIFIC RIBOSOMAL JRNL TITL 2 PROTEIN L46A REVEALS A NOVEL PROTEIN FOLD. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 450 67 2014 JRNL REFN ESSN 1090-2104 JRNL PMID 24875358 JRNL DOI 10.1016/J.BBRC.2014.05.077 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, SANE, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), DUGGAN, LEGGE, DYSON & REMARK 3 WRIGHT (SANE), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000103798. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1.0 MM [U-13C; U-15N] REMARK 210 PROTEIN-1, 50 MM POTASSIUM REMARK 210 PHOSPHATE-2, 50 MM POTASSIUM REMARK 210 CHLORIDE-3, 2 MM EDTA-4, 0.02 % REMARK 210 DSS-5, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HN(CA)CO; 3D HBHA(CO)NH; REMARK 210 3D HBHANH; 3D CCH-TOCSY; 3D 1H- REMARK 210 15N TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, NMRVIEW, CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 81.71 59.06 REMARK 500 1 HIS A 4 -46.42 -139.64 REMARK 500 1 ASN A 29 -81.39 -178.03 REMARK 500 1 SER A 30 19.99 -164.87 REMARK 500 1 HIS A 39 109.06 -54.64 REMARK 500 1 HIS A 76 -6.29 83.20 REMARK 500 2 ASN A 13 -3.83 76.49 REMARK 500 2 ASN A 29 -78.57 -173.64 REMARK 500 2 SER A 30 30.23 -154.57 REMARK 500 2 HIS A 72 -89.66 63.04 REMARK 500 2 HIS A 73 -49.46 -131.98 REMARK 500 2 HIS A 74 92.39 64.46 REMARK 500 3 ASN A 13 -15.87 71.14 REMARK 500 3 ASN A 29 -80.05 177.94 REMARK 500 3 SER A 30 23.51 -140.52 REMARK 500 3 LYS A 46 -70.58 -103.67 REMARK 500 3 HIS A 72 48.66 -101.19 REMARK 500 3 HIS A 73 -80.53 -74.18 REMARK 500 3 HIS A 74 36.03 172.87 REMARK 500 3 HIS A 75 98.56 -65.66 REMARK 500 3 HIS A 76 -32.65 174.17 REMARK 500 4 HIS A 4 98.24 72.42 REMARK 500 4 ASN A 13 -1.37 72.92 REMARK 500 4 ASN A 29 -65.70 175.05 REMARK 500 4 SER A 30 71.54 -166.11 REMARK 500 4 HIS A 76 -66.37 68.16 REMARK 500 5 LEU A 2 84.50 -155.54 REMARK 500 5 HIS A 4 89.34 -68.61 REMARK 500 5 ASN A 29 -91.13 -166.34 REMARK 500 5 SER A 30 22.43 -157.17 REMARK 500 5 HIS A 76 -46.90 176.20 REMARK 500 6 LEU A 2 -43.94 70.64 REMARK 500 6 LYS A 3 68.11 70.34 REMARK 500 6 ASN A 29 -64.70 -173.34 REMARK 500 6 SER A 30 39.45 174.54 REMARK 500 6 GLU A 71 -23.49 65.91 REMARK 500 6 HIS A 73 46.93 -144.84 REMARK 500 6 HIS A 74 123.65 -178.08 REMARK 500 7 LEU A 2 88.13 71.26 REMARK 500 7 LYS A 3 -72.07 -87.57 REMARK 500 7 ASN A 13 -2.45 68.00 REMARK 500 7 ASN A 29 76.63 163.61 REMARK 500 7 LYS A 46 -70.02 -86.68 REMARK 500 7 LEU A 69 -70.89 -115.47 REMARK 500 7 LEU A 70 -76.23 60.11 REMARK 500 7 GLU A 71 -57.84 -163.13 REMARK 500 7 HIS A 76 -176.82 174.61 REMARK 500 8 HIS A 4 93.34 43.76 REMARK 500 8 ASN A 13 -23.00 69.86 REMARK 500 8 ASN A 29 -63.98 -168.97 REMARK 500 REMARK 500 THIS ENTRY HAS 127 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 66 0.09 SIDE CHAIN REMARK 500 14 ARG A 26 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19860 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE CONSTRUCTION WAS THE SAME AS DATABASE UNP D0KTR7_SULS9, REMARK 999 BUT DERIVED FROM DIFFERENT STRAIN. C-TERMINAL LEHHHHHH ARE THE REMARK 999 EXPRESSION TAGS. DBREF 2MMP A 1 77 PDB 2MMP 2MMP 1 77 SEQRES 1 A 77 MET LEU LYS HIS GLY LYS TYR VAL TYR ILE ASP LEU ASN SEQRES 2 A 77 ASN GLY LYS TYR VAL LYS VAL ARG ILE LEU LYS SER ARG SEQRES 3 A 77 ASP ASP ASN SER VAL GLU LYS TYR VAL LEU THR SER HIS SEQRES 4 A 77 VAL SER LYS ASN ARG PRO LYS ASN ALA ILE VAL ILE LYS SEQRES 5 A 77 MET ASP ASN LEU PRO ILE GLU VAL LYS ASP LYS LEU THR SEQRES 6 A 77 ARG PHE PHE LEU LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 54 LEU A 56 5 3 HELIX 2 2 PRO A 57 LEU A 69 1 13 SHEET 1 A 3 VAL A 31 TYR A 34 0 SHEET 2 A 3 TYR A 17 SER A 25 -1 N LEU A 23 O LYS A 33 SHEET 3 A 3 VAL A 40 SER A 41 -1 O SER A 41 N TYR A 17 SHEET 1 B 4 VAL A 31 TYR A 34 0 SHEET 2 B 4 TYR A 17 SER A 25 -1 N LEU A 23 O LYS A 33 SHEET 3 B 4 GLY A 5 ASP A 11 -1 N LYS A 6 O ILE A 22 SHEET 4 B 4 VAL A 50 LYS A 52 1 O ILE A 51 N ASP A 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1