data_2MMW # _entry.id 2MMW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MMW pdb_00002mmw 10.2210/pdb2mmw/pdb RCSB RCSB103805 ? ? BMRB 21000 ? 10.13018/BMR21000 WWPDB D_1000103805 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-05-14 2 'Structure model' 1 1 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_entry_details 5 2 'Structure model' pdbx_modification_feature 6 2 'Structure model' pdbx_nmr_spectrometer 7 2 'Structure model' struct_conn 8 2 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_nmr_spectrometer.model' 4 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 2 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MMW _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-03-20 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 21000 _pdbx_database_related.db_name BMRB _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Knappe, T.A.' 1 'Linne, U.' 2 'Xie, X.' 3 'Marahiel, M.A.' 4 # _citation.id primary _citation.title 'Introducing lasso peptides as molecular scaffolds for drug design: engineering of an integrin antagonist.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 50 _citation.page_first 8714 _citation.page_last 8717 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21812076 _citation.pdbx_database_id_DOI 10.1002/anie.201102190 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Knappe, T.A.' 1 ? primary 'Manzenrieder, F.' 2 ? primary 'Mas-Moruno, C.' 3 ? primary 'Linne, U.' 4 ? primary 'Sasse, F.' 5 ? primary 'Kessler, H.' 6 ? primary 'Xie, X.' 7 ? primary 'Marahiel, M.A.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Microcin J25' _entity.formula_weight 2228.420 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation 'G12R, I13G, G14D' _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name MccJ25 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGAGHVPEYFVRGDTPISFYG _entity_poly.pdbx_seq_one_letter_code_can GGAGHVPEYFVRGDTPISFYG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 ALA n 1 4 GLY n 1 5 HIS n 1 6 VAL n 1 7 PRO n 1 8 GLU n 1 9 TYR n 1 10 PHE n 1 11 VAL n 1 12 ARG n 1 13 GLY n 1 14 ASP n 1 15 THR n 1 16 PRO n 1 17 ILE n 1 18 SER n 1 19 PHE n 1 20 TYR n 1 21 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 GLY 21 21 21 GLY GLY A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MMW _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MMW _struct.title 'LASSO PEPTIDE BASED INTEGRIN INHIBITOR: MICROCIN J25 VARIANT WITH RGD SUBSTITUTION of GLY12-ILE13-GLY14' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MMW _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text ;LASSO PEPTIDE, MICROCIN J25, EPITOPE GRAFTING, PEPTIDE SCAFFOLD, INTEGRIN INHIBITOR, ANGIOGENESIS, ANTIMICROBIAL PROTEIN, CELL ADHESION INHIBITOR, ANTIBIOTIC ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MCJA_ECOLX _struct_ref.pdbx_db_accession Q9X2V7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GGAGHVPEYFVGIGTPISFYG _struct_ref.pdbx_align_begin 38 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MMW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 21 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X2V7 _struct_ref_seq.db_align_beg 38 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 58 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 21 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2MMW ARG A 12 ? UNP Q9X2V7 GLY 49 'engineered mutation' 12 1 1 2MMW GLY A 13 ? UNP Q9X2V7 ILE 50 'engineered mutation' 13 2 1 2MMW ASP A 14 ? UNP Q9X2V7 GLY 51 'engineered mutation' 14 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id N _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id GLU _struct_conn.ptnr2_label_seq_id 8 _struct_conn.ptnr2_label_atom_id CD _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GLU _struct_conn.ptnr2_auth_seq_id 8 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.354 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id GLY _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 1 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id GLU _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 8 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id GLY _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 1 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id GLU _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 8 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom N _pdbx_modification_feature.modified_residue_id_linking_atom CD _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Isopeptide bond' # _pdbx_entry_details.entry_id 2MMW _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 6 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH1 A ARG 12 ? ? 123.77 120.30 3.47 0.50 N 2 10 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH1 A ARG 12 ? ? 123.65 120.30 3.35 0.50 N 3 15 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH1 A ARG 12 ? ? 123.80 120.30 3.50 0.50 N 4 17 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH1 A ARG 12 ? ? 123.64 120.30 3.34 0.50 N 5 18 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH1 A ARG 12 ? ? 123.51 120.30 3.21 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 3 ? ? -146.53 45.75 2 1 ASP A 14 ? ? -165.23 -71.96 3 1 SER A 18 ? ? 175.08 157.36 4 1 TYR A 20 ? ? -59.17 174.45 5 2 ALA A 3 ? ? -145.61 46.16 6 2 ASP A 14 ? ? -164.25 -70.90 7 2 SER A 18 ? ? 171.99 156.77 8 2 TYR A 20 ? ? -59.43 175.73 9 3 ALA A 3 ? ? -146.99 45.67 10 3 VAL A 11 ? ? -102.63 -169.63 11 3 ASP A 14 ? ? -162.67 -68.87 12 3 SER A 18 ? ? 174.96 157.13 13 4 ALA A 3 ? ? -147.62 46.01 14 4 ARG A 12 ? ? -55.20 76.47 15 4 ASP A 14 ? ? -161.26 -61.86 16 4 THR A 15 ? ? -174.52 145.51 17 4 SER A 18 ? ? 170.03 155.60 18 4 TYR A 20 ? ? -57.98 172.13 19 5 ALA A 3 ? ? -147.52 45.79 20 5 ASP A 14 ? ? -160.03 -65.12 21 5 TYR A 20 ? ? -59.18 174.02 22 6 ALA A 3 ? ? -147.20 46.34 23 6 ASP A 14 ? ? -160.59 -67.16 24 6 SER A 18 ? ? 174.50 156.65 25 6 TYR A 20 ? ? -58.78 176.15 26 7 ALA A 3 ? ? -147.96 45.92 27 7 ASP A 14 ? ? -161.10 -71.81 28 7 TYR A 20 ? ? -59.50 171.31 29 8 ALA A 3 ? ? -145.94 44.78 30 8 VAL A 11 ? ? -104.28 -165.70 31 8 ASP A 14 ? ? -164.87 -64.03 32 8 SER A 18 ? ? 175.52 156.88 33 8 TYR A 20 ? ? -58.23 174.40 34 9 ALA A 3 ? ? -146.34 45.60 35 9 VAL A 11 ? ? -101.66 -167.53 36 9 ASP A 14 ? ? -165.16 -65.81 37 9 SER A 18 ? ? 173.85 156.75 38 10 ALA A 3 ? ? -146.12 44.95 39 10 VAL A 11 ? ? -101.21 -169.13 40 10 ASP A 14 ? ? -165.63 -65.45 41 10 THR A 15 ? ? -171.00 143.77 42 10 SER A 18 ? ? 173.93 156.18 43 10 TYR A 20 ? ? -58.46 176.39 44 11 ALA A 3 ? ? -146.93 46.01 45 11 VAL A 11 ? ? -101.30 -169.40 46 11 ASP A 14 ? ? -164.75 -64.70 47 11 THR A 15 ? ? -170.99 143.20 48 11 SER A 18 ? ? 172.80 156.56 49 11 TYR A 20 ? ? -58.84 173.07 50 12 ALA A 3 ? ? -147.48 45.71 51 12 VAL A 11 ? ? -102.38 -169.53 52 12 ASP A 14 ? ? -164.94 -64.41 53 12 THR A 15 ? ? -170.37 142.95 54 12 SER A 18 ? ? 175.26 157.01 55 12 TYR A 20 ? ? -58.09 171.21 56 13 ALA A 3 ? ? -147.82 44.54 57 13 ARG A 12 ? ? -68.52 67.75 58 13 ASP A 14 ? ? -161.31 -66.19 59 13 SER A 18 ? ? 175.65 157.33 60 13 TYR A 20 ? ? -58.67 175.49 61 14 ALA A 3 ? ? -146.49 45.50 62 14 ASP A 14 ? ? -163.01 -63.42 63 14 THR A 15 ? ? -170.12 144.11 64 14 TYR A 20 ? ? -58.30 172.77 65 15 ALA A 3 ? ? -148.51 45.99 66 15 ASP A 14 ? ? -161.90 -61.50 67 15 THR A 15 ? ? -173.87 144.67 68 15 TYR A 20 ? ? -58.72 173.12 69 16 ALA A 3 ? ? -147.51 47.66 70 16 ARG A 12 ? ? -69.86 73.80 71 16 ASP A 14 ? ? -160.67 -66.16 72 16 SER A 18 ? ? 166.32 156.53 73 16 TYR A 20 ? ? -58.86 177.60 74 17 ALA A 3 ? ? -148.17 45.23 75 17 VAL A 11 ? ? -104.36 -162.23 76 17 ASP A 14 ? ? -156.21 -69.53 77 17 THR A 15 ? ? 178.53 150.80 78 17 SER A 18 ? ? 171.75 155.71 79 17 TYR A 20 ? ? -58.69 171.89 80 18 ALA A 3 ? ? -149.03 44.99 81 18 VAL A 11 ? ? -107.00 -167.11 82 18 ASP A 14 ? ? -156.83 -69.75 83 18 THR A 15 ? ? -178.39 143.68 84 18 SER A 18 ? ? 173.46 154.46 85 19 ALA A 3 ? ? -148.01 46.26 86 19 ASP A 14 ? ? -162.62 -63.31 87 19 THR A 15 ? ? -172.92 143.99 88 19 SER A 18 ? ? 175.10 155.42 89 19 TYR A 20 ? ? -58.46 172.43 90 20 ALA A 3 ? ? -148.80 46.22 91 20 ASP A 14 ? ? -164.28 -63.45 92 20 THR A 15 ? ? -171.50 144.52 93 20 SER A 18 ? ? 174.31 155.93 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MMW _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MMW _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '11.6 mM MCCJ25(RGD), methanol' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system methanol # _pdbx_nmr_exptl_sample.component 'MCCJ25(RGD)-1' _pdbx_nmr_exptl_sample.concentration 11.6 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH ? _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D DQF-COSY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D 1H-1H NOESY' # _pdbx_nmr_refine.entry_id 2MMW _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.authors 'GUNTERT, MUMENTHALER' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CYANA_2.1 _pdbx_nmr_software.version ? _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLU N N N N 57 GLU CA C N S 58 GLU C C N N 59 GLU O O N N 60 GLU CB C N N 61 GLU CG C N N 62 GLU CD C N N 63 GLU OE1 O N N 64 GLU OE2 O N N 65 GLU OXT O N N 66 GLU H H N N 67 GLU H2 H N N 68 GLU HA H N N 69 GLU HB2 H N N 70 GLU HB3 H N N 71 GLU HG2 H N N 72 GLU HG3 H N N 73 GLU HE2 H N N 74 GLU HXT H N N 75 GLY N N N N 76 GLY CA C N N 77 GLY C C N N 78 GLY O O N N 79 GLY OXT O N N 80 GLY H H N N 81 GLY H2 H N N 82 GLY HA2 H N N 83 GLY HA3 H N N 84 GLY HXT H N N 85 HIS N N N N 86 HIS CA C N S 87 HIS C C N N 88 HIS O O N N 89 HIS CB C N N 90 HIS CG C Y N 91 HIS ND1 N Y N 92 HIS CD2 C Y N 93 HIS CE1 C Y N 94 HIS NE2 N Y N 95 HIS OXT O N N 96 HIS H H N N 97 HIS H2 H N N 98 HIS HA H N N 99 HIS HB2 H N N 100 HIS HB3 H N N 101 HIS HD1 H N N 102 HIS HD2 H N N 103 HIS HE1 H N N 104 HIS HE2 H N N 105 HIS HXT H N N 106 ILE N N N N 107 ILE CA C N S 108 ILE C C N N 109 ILE O O N N 110 ILE CB C N S 111 ILE CG1 C N N 112 ILE CG2 C N N 113 ILE CD1 C N N 114 ILE OXT O N N 115 ILE H H N N 116 ILE H2 H N N 117 ILE HA H N N 118 ILE HB H N N 119 ILE HG12 H N N 120 ILE HG13 H N N 121 ILE HG21 H N N 122 ILE HG22 H N N 123 ILE HG23 H N N 124 ILE HD11 H N N 125 ILE HD12 H N N 126 ILE HD13 H N N 127 ILE HXT H N N 128 PHE N N N N 129 PHE CA C N S 130 PHE C C N N 131 PHE O O N N 132 PHE CB C N N 133 PHE CG C Y N 134 PHE CD1 C Y N 135 PHE CD2 C Y N 136 PHE CE1 C Y N 137 PHE CE2 C Y N 138 PHE CZ C Y N 139 PHE OXT O N N 140 PHE H H N N 141 PHE H2 H N N 142 PHE HA H N N 143 PHE HB2 H N N 144 PHE HB3 H N N 145 PHE HD1 H N N 146 PHE HD2 H N N 147 PHE HE1 H N N 148 PHE HE2 H N N 149 PHE HZ H N N 150 PHE HXT H N N 151 PRO N N N N 152 PRO CA C N S 153 PRO C C N N 154 PRO O O N N 155 PRO CB C N N 156 PRO CG C N N 157 PRO CD C N N 158 PRO OXT O N N 159 PRO H H N N 160 PRO HA H N N 161 PRO HB2 H N N 162 PRO HB3 H N N 163 PRO HG2 H N N 164 PRO HG3 H N N 165 PRO HD2 H N N 166 PRO HD3 H N N 167 PRO HXT H N N 168 SER N N N N 169 SER CA C N S 170 SER C C N N 171 SER O O N N 172 SER CB C N N 173 SER OG O N N 174 SER OXT O N N 175 SER H H N N 176 SER H2 H N N 177 SER HA H N N 178 SER HB2 H N N 179 SER HB3 H N N 180 SER HG H N N 181 SER HXT H N N 182 THR N N N N 183 THR CA C N S 184 THR C C N N 185 THR O O N N 186 THR CB C N R 187 THR OG1 O N N 188 THR CG2 C N N 189 THR OXT O N N 190 THR H H N N 191 THR H2 H N N 192 THR HA H N N 193 THR HB H N N 194 THR HG1 H N N 195 THR HG21 H N N 196 THR HG22 H N N 197 THR HG23 H N N 198 THR HXT H N N 199 TYR N N N N 200 TYR CA C N S 201 TYR C C N N 202 TYR O O N N 203 TYR CB C N N 204 TYR CG C Y N 205 TYR CD1 C Y N 206 TYR CD2 C Y N 207 TYR CE1 C Y N 208 TYR CE2 C Y N 209 TYR CZ C Y N 210 TYR OH O N N 211 TYR OXT O N N 212 TYR H H N N 213 TYR H2 H N N 214 TYR HA H N N 215 TYR HB2 H N N 216 TYR HB3 H N N 217 TYR HD1 H N N 218 TYR HD2 H N N 219 TYR HE1 H N N 220 TYR HE2 H N N 221 TYR HH H N N 222 TYR HXT H N N 223 VAL N N N N 224 VAL CA C N S 225 VAL C C N N 226 VAL O O N N 227 VAL CB C N N 228 VAL CG1 C N N 229 VAL CG2 C N N 230 VAL OXT O N N 231 VAL H H N N 232 VAL H2 H N N 233 VAL HA H N N 234 VAL HB H N N 235 VAL HG11 H N N 236 VAL HG12 H N N 237 VAL HG13 H N N 238 VAL HG21 H N N 239 VAL HG22 H N N 240 VAL HG23 H N N 241 VAL HXT H N N 242 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLU N CA sing N N 54 GLU N H sing N N 55 GLU N H2 sing N N 56 GLU CA C sing N N 57 GLU CA CB sing N N 58 GLU CA HA sing N N 59 GLU C O doub N N 60 GLU C OXT sing N N 61 GLU CB CG sing N N 62 GLU CB HB2 sing N N 63 GLU CB HB3 sing N N 64 GLU CG CD sing N N 65 GLU CG HG2 sing N N 66 GLU CG HG3 sing N N 67 GLU CD OE1 doub N N 68 GLU CD OE2 sing N N 69 GLU OE2 HE2 sing N N 70 GLU OXT HXT sing N N 71 GLY N CA sing N N 72 GLY N H sing N N 73 GLY N H2 sing N N 74 GLY CA C sing N N 75 GLY CA HA2 sing N N 76 GLY CA HA3 sing N N 77 GLY C O doub N N 78 GLY C OXT sing N N 79 GLY OXT HXT sing N N 80 HIS N CA sing N N 81 HIS N H sing N N 82 HIS N H2 sing N N 83 HIS CA C sing N N 84 HIS CA CB sing N N 85 HIS CA HA sing N N 86 HIS C O doub N N 87 HIS C OXT sing N N 88 HIS CB CG sing N N 89 HIS CB HB2 sing N N 90 HIS CB HB3 sing N N 91 HIS CG ND1 sing Y N 92 HIS CG CD2 doub Y N 93 HIS ND1 CE1 doub Y N 94 HIS ND1 HD1 sing N N 95 HIS CD2 NE2 sing Y N 96 HIS CD2 HD2 sing N N 97 HIS CE1 NE2 sing Y N 98 HIS CE1 HE1 sing N N 99 HIS NE2 HE2 sing N N 100 HIS OXT HXT sing N N 101 ILE N CA sing N N 102 ILE N H sing N N 103 ILE N H2 sing N N 104 ILE CA C sing N N 105 ILE CA CB sing N N 106 ILE CA HA sing N N 107 ILE C O doub N N 108 ILE C OXT sing N N 109 ILE CB CG1 sing N N 110 ILE CB CG2 sing N N 111 ILE CB HB sing N N 112 ILE CG1 CD1 sing N N 113 ILE CG1 HG12 sing N N 114 ILE CG1 HG13 sing N N 115 ILE CG2 HG21 sing N N 116 ILE CG2 HG22 sing N N 117 ILE CG2 HG23 sing N N 118 ILE CD1 HD11 sing N N 119 ILE CD1 HD12 sing N N 120 ILE CD1 HD13 sing N N 121 ILE OXT HXT sing N N 122 PHE N CA sing N N 123 PHE N H sing N N 124 PHE N H2 sing N N 125 PHE CA C sing N N 126 PHE CA CB sing N N 127 PHE CA HA sing N N 128 PHE C O doub N N 129 PHE C OXT sing N N 130 PHE CB CG sing N N 131 PHE CB HB2 sing N N 132 PHE CB HB3 sing N N 133 PHE CG CD1 doub Y N 134 PHE CG CD2 sing Y N 135 PHE CD1 CE1 sing Y N 136 PHE CD1 HD1 sing N N 137 PHE CD2 CE2 doub Y N 138 PHE CD2 HD2 sing N N 139 PHE CE1 CZ doub Y N 140 PHE CE1 HE1 sing N N 141 PHE CE2 CZ sing Y N 142 PHE CE2 HE2 sing N N 143 PHE CZ HZ sing N N 144 PHE OXT HXT sing N N 145 PRO N CA sing N N 146 PRO N CD sing N N 147 PRO N H sing N N 148 PRO CA C sing N N 149 PRO CA CB sing N N 150 PRO CA HA sing N N 151 PRO C O doub N N 152 PRO C OXT sing N N 153 PRO CB CG sing N N 154 PRO CB HB2 sing N N 155 PRO CB HB3 sing N N 156 PRO CG CD sing N N 157 PRO CG HG2 sing N N 158 PRO CG HG3 sing N N 159 PRO CD HD2 sing N N 160 PRO CD HD3 sing N N 161 PRO OXT HXT sing N N 162 SER N CA sing N N 163 SER N H sing N N 164 SER N H2 sing N N 165 SER CA C sing N N 166 SER CA CB sing N N 167 SER CA HA sing N N 168 SER C O doub N N 169 SER C OXT sing N N 170 SER CB OG sing N N 171 SER CB HB2 sing N N 172 SER CB HB3 sing N N 173 SER OG HG sing N N 174 SER OXT HXT sing N N 175 THR N CA sing N N 176 THR N H sing N N 177 THR N H2 sing N N 178 THR CA C sing N N 179 THR CA CB sing N N 180 THR CA HA sing N N 181 THR C O doub N N 182 THR C OXT sing N N 183 THR CB OG1 sing N N 184 THR CB CG2 sing N N 185 THR CB HB sing N N 186 THR OG1 HG1 sing N N 187 THR CG2 HG21 sing N N 188 THR CG2 HG22 sing N N 189 THR CG2 HG23 sing N N 190 THR OXT HXT sing N N 191 TYR N CA sing N N 192 TYR N H sing N N 193 TYR N H2 sing N N 194 TYR CA C sing N N 195 TYR CA CB sing N N 196 TYR CA HA sing N N 197 TYR C O doub N N 198 TYR C OXT sing N N 199 TYR CB CG sing N N 200 TYR CB HB2 sing N N 201 TYR CB HB3 sing N N 202 TYR CG CD1 doub Y N 203 TYR CG CD2 sing Y N 204 TYR CD1 CE1 sing Y N 205 TYR CD1 HD1 sing N N 206 TYR CD2 CE2 doub Y N 207 TYR CD2 HD2 sing N N 208 TYR CE1 CZ doub Y N 209 TYR CE1 HE1 sing N N 210 TYR CE2 CZ sing Y N 211 TYR CE2 HE2 sing N N 212 TYR CZ OH sing N N 213 TYR OH HH sing N N 214 TYR OXT HXT sing N N 215 VAL N CA sing N N 216 VAL N H sing N N 217 VAL N H2 sing N N 218 VAL CA C sing N N 219 VAL CA CB sing N N 220 VAL CA HA sing N N 221 VAL C O doub N N 222 VAL C OXT sing N N 223 VAL CB CG1 sing N N 224 VAL CB CG2 sing N N 225 VAL CB HB sing N N 226 VAL CG1 HG11 sing N N 227 VAL CG1 HG12 sing N N 228 VAL CG1 HG13 sing N N 229 VAL CG2 HG21 sing N N 230 VAL CG2 HG22 sing N N 231 VAL CG2 HG23 sing N N 232 VAL OXT HXT sing N N 233 # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'BRUKER AVANCE' # _atom_sites.entry_id 2MMW _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_