HEADER DNA BINDING PROTEIN/DNA 02-APR-14 2MNA TITLE THE STRUCTURAL BASIS OF DNA BINDING BY THE SINGLE-STRANDED DNA-BINDING TITLE 2 PROTEIN FROM SULFOLOBUS SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SSDNA; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SINGLE-STRANDED DNA BINDING PROTEIN (SSB); COMPND 7 CHAIN: A; COMPND 8 FRAGMENT: UNP RESIDUES 1-114; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 5 ORGANISM_TAXID: 273057; SOURCE 6 STRAIN: ATCC 35092 / DSM 1617 / JCM 11322 / P2; SOURCE 7 GENE: SSB, SSO2364; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPAIR, SSB, SULFOLOBUS SOLFATARICUS, DNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.GAMSJAEGER,R.KARIAWASAM,A.X.GIMENEZ,C.F.TOUMA,E.MCILWAIN, AUTHOR 2 R.E.BERNARDO,N.E.SHEPHERD,S.F.ATAIDE,A.Q.DONG,D.J.RICHARD,M.F.WHITE, AUTHOR 3 L.CUBEDDU REVDAT 2 14-JUN-23 2MNA 1 REMARK SEQADV REVDAT 1 17-DEC-14 2MNA 0 JRNL AUTH R.GAMSJAEGER,R.KARIAWASAM,A.X.GIMENEZ,C.TOUMA,E.MCILWAIN, JRNL AUTH 2 R.E.BERNARDO,N.E.SHEPHERD,S.F.ATAIDE,Q.DONG,D.J.RICHARD, JRNL AUTH 3 M.F.WHITE,L.CUBEDDU JRNL TITL THE STRUCTURAL BASIS OF DNA BINDING BY THE SINGLE-STRANDED JRNL TITL 2 DNA-BINDING PROTEIN FROM SULFOLOBUS SOLFATARICUS JRNL REF BIOCHEM.J. V. 465 337 2015 JRNL REFN ISSN 0264-6021 JRNL PMID 25367669 JRNL DOI 10.1042/BJ20141140 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, HADDOCK REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MNA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000103819. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.8-1.5 MM [U-100% 13C; U-100% REMARK 210 15N] SSOSSB-1, 90 % H2O-2, 10 % REMARK 210 D2O-3, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HCC(CO)NH-TOCSY; 3D HCCH- REMARK 210 TOCSY; 2D 15N13C FILTERED NOESY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 15N13C FILTERED (F1) REMARK 210 NOESY ALIPHATIC; 3D 15N13C REMARK 210 FILTERED (F1) NOESY AROMATIC; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HNCACB; REMARK 210 3D CC(CO)NH-TOCSY; 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 46 -164.00 -127.45 REMARK 500 1 ASN A 73 102.60 -50.09 REMARK 500 1 ALA A 74 -99.80 -122.85 REMARK 500 1 TRP A 75 171.19 174.44 REMARK 500 1 GLU A 98 -154.11 -128.79 REMARK 500 2 ASP A 46 -163.98 -127.40 REMARK 500 2 ASN A 73 102.81 -50.23 REMARK 500 2 ALA A 74 -100.19 -123.36 REMARK 500 2 TRP A 75 171.89 174.89 REMARK 500 2 GLU A 98 -154.02 -128.77 REMARK 500 3 ASP A 46 -164.07 -127.48 REMARK 500 3 ASN A 73 102.24 -50.09 REMARK 500 3 ALA A 74 -102.35 -123.71 REMARK 500 3 TRP A 75 171.92 175.54 REMARK 500 3 LYS A 80 18.44 59.36 REMARK 500 3 GLU A 98 -154.04 -128.79 REMARK 500 4 ASP A 46 -164.03 -127.51 REMARK 500 4 ASN A 73 102.32 -50.24 REMARK 500 4 ALA A 74 -100.51 -123.46 REMARK 500 4 TRP A 75 172.37 175.11 REMARK 500 4 LYS A 90 1.51 -68.39 REMARK 500 4 GLU A 98 -154.06 -128.74 REMARK 500 5 ASP A 46 -164.02 -127.45 REMARK 500 5 ASN A 73 102.23 -50.19 REMARK 500 5 ALA A 74 -100.10 -122.41 REMARK 500 5 TRP A 75 170.66 174.03 REMARK 500 5 LYS A 90 0.09 -67.31 REMARK 500 5 GLU A 98 -153.99 -128.83 REMARK 500 6 ASP A 46 -164.03 -127.44 REMARK 500 6 ASN A 73 102.77 -50.15 REMARK 500 6 ALA A 74 -100.79 -124.35 REMARK 500 6 TRP A 75 173.76 175.48 REMARK 500 6 LYS A 90 1.60 -68.35 REMARK 500 6 GLU A 98 -154.01 -128.69 REMARK 500 7 ASP A 46 -164.02 -127.46 REMARK 500 7 ASN A 73 103.31 -50.22 REMARK 500 7 ALA A 74 -100.77 -123.89 REMARK 500 7 TRP A 75 173.37 175.33 REMARK 500 7 LYS A 90 2.13 -69.62 REMARK 500 7 GLU A 98 -154.05 -128.79 REMARK 500 8 ASP A 46 -164.00 -127.42 REMARK 500 8 ASN A 73 103.56 -50.14 REMARK 500 8 ALA A 74 -100.30 -124.83 REMARK 500 8 TRP A 75 172.11 175.15 REMARK 500 8 LYS A 90 1.42 -68.57 REMARK 500 8 GLU A 98 -154.07 -128.85 REMARK 500 9 ASP A 46 -164.00 -127.39 REMARK 500 9 ASN A 73 102.72 -50.11 REMARK 500 9 ALA A 74 -101.08 -123.66 REMARK 500 9 TRP A 75 173.76 175.80 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19095 RELATED DB: BMRB DBREF 2MNA A 1 114 UNP Q97W73 Q97W73_SULSO 1 114 DBREF 2MNA B 1 6 PDB 2MNA 2MNA 1 6 SEQADV 2MNA ARG A 115 UNP Q97W73 EXPRESSION TAG SEQADV 2MNA ARG A 116 UNP Q97W73 EXPRESSION TAG SEQADV 2MNA ARG A 117 UNP Q97W73 EXPRESSION TAG SEQRES 1 B 6 DT DT DT DT DT DT SEQRES 1 A 117 MET GLU GLU LYS VAL GLY ASN LEU LYS PRO ASN MET GLU SEQRES 2 A 117 SER VAL ASN VAL THR VAL ARG VAL LEU GLU ALA SER GLU SEQRES 3 A 117 ALA ARG GLN ILE GLN THR LYS ASN GLY VAL ARG THR ILE SEQRES 4 A 117 SER GLU ALA ILE VAL GLY ASP GLU THR GLY ARG VAL LYS SEQRES 5 A 117 LEU THR LEU TRP GLY LYS HIS ALA GLY SER ILE LYS GLU SEQRES 6 A 117 GLY GLN VAL VAL LYS ILE GLU ASN ALA TRP THR THR ALA SEQRES 7 A 117 PHE LYS GLY GLN VAL GLN LEU ASN ALA GLY SER LYS THR SEQRES 8 A 117 LYS ILE ALA GLU ALA SER GLU ASP GLY PHE PRO GLU SER SEQRES 9 A 117 SER GLN ILE PRO GLU ASN THR PRO THR ALA ARG ARG ARG HELIX 1 1 LYS A 4 LEU A 8 5 5 HELIX 2 2 GLU A 103 ILE A 107 5 5 SHEET 1 A 5 ARG A 28 THR A 32 0 SHEET 2 A 5 GLY A 35 GLY A 45 -1 O GLY A 35 N THR A 32 SHEET 3 A 5 VAL A 51 TRP A 56 -1 O LEU A 53 N ALA A 42 SHEET 4 A 5 LEU A 85 ALA A 87 1 O ALA A 87 N THR A 54 SHEET 5 A 5 TRP A 75 THR A 76 -1 N TRP A 75 O ASN A 86 SHEET 1 B 5 ARG A 28 THR A 32 0 SHEET 2 B 5 GLY A 35 GLY A 45 -1 O GLY A 35 N THR A 32 SHEET 3 B 5 VAL A 17 VAL A 21 -1 N ARG A 20 O GLY A 45 SHEET 4 B 5 VAL A 68 ILE A 71 -1 O ILE A 71 N VAL A 17 SHEET 5 B 5 ALA A 94 GLU A 95 -1 O ALA A 94 N LYS A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1