data_2MNF # _entry.id 2MNF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MNF pdb_00002mnf 10.2210/pdb2mnf/pdb RCSB RCSB103824 ? ? BMRB 19890 ? 10.13018/BMR19890 WWPDB D_1000103824 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-30 2 'Structure model' 1 1 2014-09-17 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MNF _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-04-03 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 19890 BMRB unspecified . 2MND PDB unspecified . 2MNE PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Alniss, H.Y.' 1 'Salvia, M.-V.' 2 'Sadikov, M.' 3 'Golovchenko, I.' 4 'Anthony, N.G.' 5 'Khalaf, A.I.' 6 'Mackay, S.P.' 7 'Suckling, C.J.' 8 'Parkinson, J.A.' 9 # _citation.id primary _citation.title 'Recognition of the DNA minor groove by thiazotropsin analogues.' _citation.journal_abbrev Chembiochem _citation.journal_volume 15 _citation.page_first 1978 _citation.page_last 1990 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1439-4227 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25045155 _citation.pdbx_database_id_DOI 10.1002/cbic.201402202 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Alniss, H.Y.' 1 ? primary 'Salvia, M.V.' 2 ? primary 'Sadikov, M.' 3 ? primary 'Golovchenko, I.' 4 ? primary 'Anthony, N.G.' 5 ? primary 'Khalaf, A.I.' 6 ? primary 'MacKay, S.P.' 7 ? primary 'Suckling, C.J.' 8 ? primary 'Parkinson, J.A.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3'" _entity.formula_weight 3045.005 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DC)(DT)(DA)(DG)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGACTAGTCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DC n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n B 1 1 DC 1 11 11 DC DC B . n B 1 2 DG 2 12 12 DG DG B . n B 1 3 DA 3 13 13 DA DA B . n B 1 4 DC 4 14 14 DC DC B . n B 1 5 DT 5 15 15 DT DT B . n B 1 6 DA 6 16 16 DA DA B . n B 1 7 DG 7 17 17 DG DG B . n B 1 8 DT 8 18 18 DT DT B . n B 1 9 DC 9 19 19 DC DC B . n B 1 10 DG 10 20 20 DG DG B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MNF _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MNF _struct.title 'AIK-18/51 DNA recognition sequence d(CGACTAGTCG)2' _struct.pdbx_model_details 'minimized average structure, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2MNF _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'THIAZOTROPSINS, DNA RECOGNITION, ISOTHERMAL TITRATION CALORIMETRY NMR, SELF-ASSEMBLY, MINOR GROOVE BINDER, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2MNF _struct_ref.pdbx_db_accession 2MNF _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MNF A 1 ? 10 ? 2MNF 1 ? 10 ? 1 10 2 1 2MNF B 1 ? 10 ? 2MNF 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DT 8 N3 ? ? A DC 4 B DT 18 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog13 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A DC 1 ? ? N3 A DC 1 ? ? 1.443 1.353 0.090 0.008 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.272 1.335 -0.063 0.007 N 3 1 C4 A DC 1 ? ? C5 A DC 1 ? ? 1.480 1.425 0.055 0.008 N 4 1 N3 A DG 2 ? ? C4 A DG 2 ? ? 1.440 1.350 0.090 0.007 N 5 1 C4 A DG 2 ? ? C5 A DG 2 ? ? 1.330 1.379 -0.049 0.007 N 6 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.437 1.388 0.049 0.006 N 7 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.261 1.305 -0.044 0.006 N 8 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.303 1.374 -0.071 0.007 N 9 1 N9 A DG 2 ? ? C4 A DG 2 ? ? 1.311 1.375 -0.064 0.008 N 10 1 C5 A DA 3 ? ? N7 A DA 3 ? ? 1.338 1.388 -0.050 0.006 N 11 1 N7 A DA 3 ? ? C8 A DA 3 ? ? 1.265 1.311 -0.046 0.007 N 12 1 C8 A DA 3 ? ? N9 A DA 3 ? ? 1.307 1.373 -0.066 0.008 N 13 1 C2 A DC 4 ? ? N3 A DC 4 ? ? 1.443 1.353 0.090 0.008 N 14 1 N3 A DC 4 ? ? C4 A DC 4 ? ? 1.270 1.335 -0.065 0.007 N 15 1 C4 A DC 4 ? ? C5 A DC 4 ? ? 1.480 1.425 0.055 0.008 N 16 1 C5 A DA 6 ? ? N7 A DA 6 ? ? 1.338 1.388 -0.050 0.006 N 17 1 N7 A DA 6 ? ? C8 A DA 6 ? ? 1.268 1.311 -0.043 0.007 N 18 1 C8 A DA 6 ? ? N9 A DA 6 ? ? 1.308 1.373 -0.065 0.008 N 19 1 N3 A DG 7 ? ? C4 A DG 7 ? ? 1.440 1.350 0.090 0.007 N 20 1 C4 A DG 7 ? ? C5 A DG 7 ? ? 1.331 1.379 -0.048 0.007 N 21 1 C5 A DG 7 ? ? N7 A DG 7 ? ? 1.436 1.388 0.048 0.006 N 22 1 N7 A DG 7 ? ? C8 A DG 7 ? ? 1.261 1.305 -0.044 0.006 N 23 1 C8 A DG 7 ? ? N9 A DG 7 ? ? 1.303 1.374 -0.071 0.007 N 24 1 N9 A DG 7 ? ? C4 A DG 7 ? ? 1.312 1.375 -0.063 0.008 N 25 1 C2 A DC 9 ? ? N3 A DC 9 ? ? 1.443 1.353 0.090 0.008 N 26 1 N3 A DC 9 ? ? C4 A DC 9 ? ? 1.271 1.335 -0.064 0.007 N 27 1 C4 A DC 9 ? ? C5 A DC 9 ? ? 1.479 1.425 0.054 0.008 N 28 1 N3 A DG 10 ? ? C4 A DG 10 ? ? 1.440 1.350 0.090 0.007 N 29 1 C4 A DG 10 ? ? C5 A DG 10 ? ? 1.331 1.379 -0.048 0.007 N 30 1 C5 A DG 10 ? ? N7 A DG 10 ? ? 1.436 1.388 0.048 0.006 N 31 1 N7 A DG 10 ? ? C8 A DG 10 ? ? 1.262 1.305 -0.043 0.006 N 32 1 C8 A DG 10 ? ? N9 A DG 10 ? ? 1.305 1.374 -0.069 0.007 N 33 1 N9 A DG 10 ? ? C4 A DG 10 ? ? 1.311 1.375 -0.064 0.008 N 34 1 C2 B DC 11 ? ? N3 B DC 11 ? ? 1.444 1.353 0.091 0.008 N 35 1 N3 B DC 11 ? ? C4 B DC 11 ? ? 1.273 1.335 -0.062 0.007 N 36 1 C4 B DC 11 ? ? C5 B DC 11 ? ? 1.479 1.425 0.054 0.008 N 37 1 N3 B DG 12 ? ? C4 B DG 12 ? ? 1.439 1.350 0.089 0.007 N 38 1 C4 B DG 12 ? ? C5 B DG 12 ? ? 1.330 1.379 -0.049 0.007 N 39 1 C5 B DG 12 ? ? N7 B DG 12 ? ? 1.436 1.388 0.048 0.006 N 40 1 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.262 1.305 -0.043 0.006 N 41 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.303 1.374 -0.071 0.007 N 42 1 N9 B DG 12 ? ? C4 B DG 12 ? ? 1.310 1.375 -0.065 0.008 N 43 1 C5 B DA 13 ? ? N7 B DA 13 ? ? 1.338 1.388 -0.050 0.006 N 44 1 N7 B DA 13 ? ? C8 B DA 13 ? ? 1.267 1.311 -0.044 0.007 N 45 1 C8 B DA 13 ? ? N9 B DA 13 ? ? 1.311 1.373 -0.062 0.008 N 46 1 C2 B DC 14 ? ? N3 B DC 14 ? ? 1.442 1.353 0.089 0.008 N 47 1 N3 B DC 14 ? ? C4 B DC 14 ? ? 1.271 1.335 -0.064 0.007 N 48 1 C4 B DC 14 ? ? C5 B DC 14 ? ? 1.478 1.425 0.053 0.008 N 49 1 C5 B DA 16 ? ? N7 B DA 16 ? ? 1.338 1.388 -0.050 0.006 N 50 1 N7 B DA 16 ? ? C8 B DA 16 ? ? 1.268 1.311 -0.043 0.007 N 51 1 C8 B DA 16 ? ? N9 B DA 16 ? ? 1.309 1.373 -0.064 0.008 N 52 1 N3 B DG 17 ? ? C4 B DG 17 ? ? 1.440 1.350 0.090 0.007 N 53 1 C4 B DG 17 ? ? C5 B DG 17 ? ? 1.331 1.379 -0.048 0.007 N 54 1 C5 B DG 17 ? ? N7 B DG 17 ? ? 1.435 1.388 0.047 0.006 N 55 1 N7 B DG 17 ? ? C8 B DG 17 ? ? 1.260 1.305 -0.045 0.006 N 56 1 C8 B DG 17 ? ? N9 B DG 17 ? ? 1.304 1.374 -0.070 0.007 N 57 1 N9 B DG 17 ? ? C4 B DG 17 ? ? 1.312 1.375 -0.063 0.008 N 58 1 C2 B DC 19 ? ? N3 B DC 19 ? ? 1.444 1.353 0.091 0.008 N 59 1 N3 B DC 19 ? ? C4 B DC 19 ? ? 1.273 1.335 -0.062 0.007 N 60 1 C4 B DC 19 ? ? C5 B DC 19 ? ? 1.477 1.425 0.052 0.008 N 61 1 N3 B DG 20 ? ? C4 B DG 20 ? ? 1.441 1.350 0.091 0.007 N 62 1 C4 B DG 20 ? ? C5 B DG 20 ? ? 1.330 1.379 -0.049 0.007 N 63 1 C5 B DG 20 ? ? N7 B DG 20 ? ? 1.436 1.388 0.048 0.006 N 64 1 N7 B DG 20 ? ? C8 B DG 20 ? ? 1.261 1.305 -0.044 0.006 N 65 1 C8 B DG 20 ? ? N9 B DG 20 ? ? 1.305 1.374 -0.069 0.007 N 66 1 N9 B DG 20 ? ? C4 B DG 20 ? ? 1.310 1.375 -0.065 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 100.67 104.50 -3.83 0.40 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.79 108.30 2.49 0.30 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 116.60 121.90 -5.30 0.40 N 4 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 121.03 117.40 3.63 0.50 N 5 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.03 118.90 4.13 0.60 N 6 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.65 121.90 -5.25 0.70 N 7 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 122.44 118.00 4.44 0.70 N 8 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 109.92 119.60 -9.68 1.50 N 9 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 100.94 105.90 -4.96 0.80 N 10 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.40 108.30 4.10 0.30 N 11 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 120.80 111.90 8.90 0.50 N 12 1 N3 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 119.23 128.60 -9.37 0.50 N 13 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 115.43 111.50 3.93 0.50 N 14 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 101.28 110.80 -9.52 0.40 N 15 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 109.18 104.30 4.88 0.50 N 16 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 110.02 113.10 -3.08 0.50 N 17 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 111.51 105.40 6.11 0.40 N 18 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 138.37 130.40 7.97 0.60 N 19 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.47 119.90 4.57 0.60 N 20 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 120.10 128.60 -8.50 0.60 N 21 1 OP1 A DA 3 ? ? P A DA 3 ? ? OP2 A DA 3 ? ? 108.84 119.60 -10.76 1.50 N 22 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 122.52 129.30 -6.78 0.50 N 23 1 C2 A DA 3 ? ? N3 A DA 3 ? ? C4 A DA 3 ? ? 118.04 110.60 7.44 0.50 N 24 1 N3 A DA 3 ? ? C4 A DA 3 ? ? C5 A DA 3 ? ? 119.35 126.80 -7.45 0.70 N 25 1 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 122.94 117.00 5.94 0.50 N 26 1 C4 A DA 3 ? ? C5 A DA 3 ? ? N7 A DA 3 ? ? 105.64 110.70 -5.06 0.50 N 27 1 C5 A DA 3 ? ? N7 A DA 3 ? ? C8 A DA 3 ? ? 109.60 103.90 5.70 0.50 N 28 1 N3 A DA 3 ? ? C4 A DA 3 ? ? N9 A DA 3 ? ? 134.43 127.40 7.03 0.80 N 29 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 123.63 118.60 5.03 0.60 N 30 1 OP1 A DC 4 ? ? P A DC 4 ? ? OP2 A DC 4 ? ? 109.72 119.60 -9.88 1.50 N 31 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 100.76 105.90 -5.14 0.80 N 32 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.77 108.30 4.47 0.30 N 33 1 N3 A DC 4 ? ? C4 A DC 4 ? ? C5 A DC 4 ? ? 116.50 121.90 -5.40 0.40 N 34 1 C4 A DC 4 ? ? C5 A DC 4 ? ? C6 A DC 4 ? ? 120.95 117.40 3.55 0.50 N 35 1 N1 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 123.47 118.90 4.57 0.60 N 36 1 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.02 121.90 -5.88 0.70 N 37 1 N3 A DC 4 ? ? C4 A DC 4 ? ? N4 A DC 4 ? ? 122.49 118.00 4.49 0.70 N 38 1 OP1 A DT 5 ? ? P A DT 5 ? ? OP2 A DT 5 ? ? 109.45 119.60 -10.15 1.50 N 39 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.17 108.30 1.87 0.30 N 40 1 N1 A DT 5 ? ? C2 A DT 5 ? ? N3 A DT 5 ? ? 118.88 114.60 4.28 0.60 N 41 1 C2 A DT 5 ? ? N3 A DT 5 ? ? C4 A DT 5 ? ? 122.42 127.20 -4.78 0.60 N 42 1 C5 A DT 5 ? ? C4 A DT 5 ? ? O4 A DT 5 ? ? 119.46 124.90 -5.44 0.70 N 43 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 109.24 119.60 -10.36 1.50 N 44 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? "C2'" A DA 6 ? ? 100.23 105.90 -5.67 0.80 N 45 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.21 108.30 3.91 0.30 N 46 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 122.34 118.60 3.74 0.60 N 47 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 122.30 129.30 -7.00 0.50 N 48 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 117.91 110.60 7.31 0.50 N 49 1 N3 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 120.00 126.80 -6.80 0.70 N 50 1 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 122.38 117.00 5.38 0.50 N 51 1 C4 A DA 6 ? ? C5 A DA 6 ? ? N7 A DA 6 ? ? 105.36 110.70 -5.34 0.50 N 52 1 C5 A DA 6 ? ? N7 A DA 6 ? ? C8 A DA 6 ? ? 109.81 103.90 5.91 0.50 N 53 1 N3 A DA 6 ? ? C4 A DA 6 ? ? N9 A DA 6 ? ? 133.40 127.40 6.00 0.80 N 54 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 122.69 118.60 4.09 0.60 N 55 1 OP1 A DG 7 ? ? P A DG 7 ? ? OP2 A DG 7 ? ? 109.61 119.60 -9.99 1.50 N 56 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? "C2'" A DG 7 ? ? 99.89 105.90 -6.01 0.80 N 57 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 114.54 108.30 6.24 0.30 N 58 1 C2 A DG 7 ? ? N3 A DG 7 ? ? C4 A DG 7 ? ? 120.87 111.90 8.97 0.50 N 59 1 N3 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 119.06 128.60 -9.54 0.50 N 60 1 C5 A DG 7 ? ? C6 A DG 7 ? ? N1 A DG 7 ? ? 115.53 111.50 4.03 0.50 N 61 1 C4 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 101.35 110.80 -9.45 0.40 N 62 1 C5 A DG 7 ? ? N7 A DG 7 ? ? C8 A DG 7 ? ? 109.14 104.30 4.84 0.50 N 63 1 N7 A DG 7 ? ? C8 A DG 7 ? ? N9 A DG 7 ? ? 110.08 113.10 -3.02 0.50 N 64 1 N9 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 111.45 105.40 6.05 0.40 N 65 1 C6 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 138.22 130.40 7.82 0.60 N 66 1 N1 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 124.66 119.90 4.76 0.60 N 67 1 C5 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 119.81 128.60 -8.79 0.60 N 68 1 "C3'" A DG 7 ? ? "O3'" A DG 7 ? ? P A DT 8 ? ? 129.36 119.70 9.66 1.20 Y 69 1 OP1 A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 108.64 119.60 -10.96 1.50 N 70 1 P A DT 8 ? ? "O5'" A DT 8 ? ? "C5'" A DT 8 ? ? 131.53 120.90 10.63 1.60 N 71 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 100.18 105.90 -5.72 0.80 N 72 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 113.13 108.30 4.83 0.30 N 73 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 119.21 114.60 4.61 0.60 N 74 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 121.91 127.20 -5.29 0.60 N 75 1 C5 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 119.17 124.90 -5.73 0.70 N 76 1 OP1 A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 109.85 119.60 -9.75 1.50 N 77 1 N3 A DC 9 ? ? C4 A DC 9 ? ? C5 A DC 9 ? ? 116.64 121.90 -5.26 0.40 N 78 1 C4 A DC 9 ? ? C5 A DC 9 ? ? C6 A DC 9 ? ? 120.90 117.40 3.50 0.50 N 79 1 N1 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 123.30 118.90 4.40 0.60 N 80 1 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 116.42 121.90 -5.48 0.70 N 81 1 N3 A DC 9 ? ? C4 A DC 9 ? ? N4 A DC 9 ? ? 122.43 118.00 4.43 0.70 N 82 1 OP1 A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 109.16 119.60 -10.44 1.50 N 83 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? "C2'" A DG 10 ? ? 100.09 105.90 -5.81 0.80 N 84 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.05 108.30 3.75 0.30 N 85 1 C2 A DG 10 ? ? N3 A DG 10 ? ? C4 A DG 10 ? ? 120.95 111.90 9.05 0.50 N 86 1 N3 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 118.98 128.60 -9.62 0.50 N 87 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 115.55 111.50 4.05 0.50 N 88 1 C4 A DG 10 ? ? C5 A DG 10 ? ? N7 A DG 10 ? ? 101.07 110.80 -9.73 0.40 N 89 1 C5 A DG 10 ? ? N7 A DG 10 ? ? C8 A DG 10 ? ? 109.37 104.30 5.07 0.50 N 90 1 N7 A DG 10 ? ? C8 A DG 10 ? ? N9 A DG 10 ? ? 109.99 113.10 -3.11 0.50 N 91 1 N9 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 111.77 105.40 6.37 0.40 N 92 1 C6 A DG 10 ? ? C5 A DG 10 ? ? N7 A DG 10 ? ? 138.51 130.40 8.11 0.60 N 93 1 N1 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 124.24 119.90 4.34 0.60 N 94 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 120.20 128.60 -8.40 0.60 N 95 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 116.62 121.90 -5.28 0.40 N 96 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 120.92 117.40 3.52 0.50 N 97 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 123.00 118.90 4.10 0.60 N 98 1 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 116.69 121.90 -5.21 0.70 N 99 1 N3 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 122.78 118.00 4.78 0.70 N 100 1 OP1 B DG 12 ? ? P B DG 12 ? ? OP2 B DG 12 ? ? 109.74 119.60 -9.86 1.50 N 101 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 113.02 108.30 4.72 0.30 N 102 1 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 120.95 111.90 9.05 0.50 N 103 1 N3 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 119.28 128.60 -9.32 0.50 N 104 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 115.46 111.50 3.96 0.50 N 105 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 101.18 110.80 -9.62 0.40 N 106 1 C5 B DG 12 ? ? N7 B DG 12 ? ? C8 B DG 12 ? ? 109.30 104.30 5.00 0.50 N 107 1 N7 B DG 12 ? ? C8 B DG 12 ? ? N9 B DG 12 ? ? 109.90 113.10 -3.20 0.50 N 108 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 111.65 105.40 6.25 0.40 N 109 1 C6 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 138.66 130.40 8.26 0.60 N 110 1 N1 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 124.42 119.90 4.52 0.60 N 111 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 120.12 128.60 -8.48 0.60 N 112 1 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DA 13 ? ? 130.50 119.70 10.80 1.20 Y 113 1 OP1 B DA 13 ? ? P B DA 13 ? ? OP2 B DA 13 ? ? 109.13 119.60 -10.47 1.50 N 114 1 "O4'" B DA 13 ? ? "C4'" B DA 13 ? ? "C3'" B DA 13 ? ? 101.50 104.50 -3.00 0.40 N 115 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 111.08 108.30 2.78 0.30 N 116 1 N1 B DA 13 ? ? C2 B DA 13 ? ? N3 B DA 13 ? ? 122.42 129.30 -6.88 0.50 N 117 1 C2 B DA 13 ? ? N3 B DA 13 ? ? C4 B DA 13 ? ? 118.19 110.60 7.59 0.50 N 118 1 N3 B DA 13 ? ? C4 B DA 13 ? ? C5 B DA 13 ? ? 119.34 126.80 -7.46 0.70 N 119 1 C4 B DA 13 ? ? C5 B DA 13 ? ? C6 B DA 13 ? ? 122.85 117.00 5.85 0.50 N 120 1 C4 B DA 13 ? ? C5 B DA 13 ? ? N7 B DA 13 ? ? 105.07 110.70 -5.63 0.50 N 121 1 C5 B DA 13 ? ? N7 B DA 13 ? ? C8 B DA 13 ? ? 109.94 103.90 6.04 0.50 N 122 1 N3 B DA 13 ? ? C4 B DA 13 ? ? N9 B DA 13 ? ? 133.54 127.40 6.14 0.80 N 123 1 N1 B DA 13 ? ? C6 B DA 13 ? ? N6 B DA 13 ? ? 122.77 118.60 4.17 0.60 N 124 1 "C3'" B DA 13 ? ? "O3'" B DA 13 ? ? P B DC 14 ? ? 130.40 119.70 10.70 1.20 Y 125 1 OP1 B DC 14 ? ? P B DC 14 ? ? OP2 B DC 14 ? ? 108.08 119.60 -11.52 1.50 N 126 1 N3 B DC 14 ? ? C4 B DC 14 ? ? C5 B DC 14 ? ? 116.50 121.90 -5.40 0.40 N 127 1 C4 B DC 14 ? ? C5 B DC 14 ? ? C6 B DC 14 ? ? 121.26 117.40 3.86 0.50 N 128 1 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.75 118.90 3.85 0.60 N 129 1 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 116.62 121.90 -5.28 0.70 N 130 1 N3 B DC 14 ? ? C4 B DC 14 ? ? N4 B DC 14 ? ? 122.54 118.00 4.54 0.70 N 131 1 "C3'" B DC 14 ? ? "O3'" B DC 14 ? ? P B DT 15 ? ? 133.80 119.70 14.10 1.20 Y 132 1 OP1 B DT 15 ? ? P B DT 15 ? ? OP2 B DT 15 ? ? 110.48 119.60 -9.12 1.50 N 133 1 N1 B DT 15 ? ? C2 B DT 15 ? ? N3 B DT 15 ? ? 119.07 114.60 4.47 0.60 N 134 1 C2 B DT 15 ? ? N3 B DT 15 ? ? C4 B DT 15 ? ? 122.57 127.20 -4.63 0.60 N 135 1 C5 B DT 15 ? ? C4 B DT 15 ? ? O4 B DT 15 ? ? 119.96 124.90 -4.94 0.70 N 136 1 OP1 B DA 16 ? ? P B DA 16 ? ? OP2 B DA 16 ? ? 109.36 119.60 -10.24 1.50 N 137 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? "C2'" B DA 16 ? ? 99.92 105.90 -5.98 0.80 N 138 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 111.49 108.30 3.19 0.30 N 139 1 C6 B DA 16 ? ? N1 B DA 16 ? ? C2 B DA 16 ? ? 122.23 118.60 3.63 0.60 N 140 1 N1 B DA 16 ? ? C2 B DA 16 ? ? N3 B DA 16 ? ? 122.26 129.30 -7.04 0.50 N 141 1 C2 B DA 16 ? ? N3 B DA 16 ? ? C4 B DA 16 ? ? 118.04 110.60 7.44 0.50 N 142 1 N3 B DA 16 ? ? C4 B DA 16 ? ? C5 B DA 16 ? ? 119.92 126.80 -6.88 0.70 N 143 1 C4 B DA 16 ? ? C5 B DA 16 ? ? C6 B DA 16 ? ? 122.31 117.00 5.31 0.50 N 144 1 C4 B DA 16 ? ? C5 B DA 16 ? ? N7 B DA 16 ? ? 105.23 110.70 -5.47 0.50 N 145 1 C5 B DA 16 ? ? N7 B DA 16 ? ? C8 B DA 16 ? ? 109.87 103.90 5.97 0.50 N 146 1 N3 B DA 16 ? ? C4 B DA 16 ? ? N9 B DA 16 ? ? 133.31 127.40 5.91 0.80 N 147 1 N1 B DA 16 ? ? C6 B DA 16 ? ? N6 B DA 16 ? ? 122.60 118.60 4.00 0.60 N 148 1 "C3'" B DA 16 ? ? "O3'" B DA 16 ? ? P B DG 17 ? ? 128.76 119.70 9.06 1.20 Y 149 1 OP1 B DG 17 ? ? P B DG 17 ? ? OP2 B DG 17 ? ? 109.77 119.60 -9.83 1.50 N 150 1 C2 B DG 17 ? ? N3 B DG 17 ? ? C4 B DG 17 ? ? 120.78 111.90 8.88 0.50 N 151 1 N3 B DG 17 ? ? C4 B DG 17 ? ? C5 B DG 17 ? ? 118.96 128.60 -9.64 0.50 N 152 1 C5 B DG 17 ? ? C6 B DG 17 ? ? N1 B DG 17 ? ? 115.12 111.50 3.62 0.50 N 153 1 C4 B DG 17 ? ? C5 B DG 17 ? ? N7 B DG 17 ? ? 101.44 110.80 -9.36 0.40 N 154 1 C5 B DG 17 ? ? N7 B DG 17 ? ? C8 B DG 17 ? ? 109.08 104.30 4.78 0.50 N 155 1 N9 B DG 17 ? ? C4 B DG 17 ? ? C5 B DG 17 ? ? 111.45 105.40 6.05 0.40 N 156 1 C6 B DG 17 ? ? C5 B DG 17 ? ? N7 B DG 17 ? ? 137.82 130.40 7.42 0.60 N 157 1 N1 B DG 17 ? ? C6 B DG 17 ? ? O6 B DG 17 ? ? 124.60 119.90 4.70 0.60 N 158 1 C5 B DG 17 ? ? C6 B DG 17 ? ? O6 B DG 17 ? ? 120.28 128.60 -8.32 0.60 N 159 1 OP1 B DT 18 ? ? P B DT 18 ? ? OP2 B DT 18 ? ? 109.73 119.60 -9.87 1.50 N 160 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? "C2'" B DT 18 ? ? 100.95 105.90 -4.95 0.80 N 161 1 N1 B DT 18 ? ? C2 B DT 18 ? ? N3 B DT 18 ? ? 119.26 114.60 4.66 0.60 N 162 1 C2 B DT 18 ? ? N3 B DT 18 ? ? C4 B DT 18 ? ? 122.14 127.20 -5.06 0.60 N 163 1 C5 B DT 18 ? ? C4 B DT 18 ? ? O4 B DT 18 ? ? 119.05 124.90 -5.85 0.70 N 164 1 OP1 B DC 19 ? ? P B DC 19 ? ? OP2 B DC 19 ? ? 109.18 119.60 -10.42 1.50 N 165 1 N3 B DC 19 ? ? C4 B DC 19 ? ? C5 B DC 19 ? ? 116.75 121.90 -5.15 0.40 N 166 1 C4 B DC 19 ? ? C5 B DC 19 ? ? C6 B DC 19 ? ? 120.58 117.40 3.18 0.50 N 167 1 N1 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 123.05 118.90 4.15 0.60 N 168 1 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.81 121.90 -5.09 0.70 N 169 1 N3 B DC 19 ? ? C4 B DC 19 ? ? N4 B DC 19 ? ? 122.77 118.00 4.77 0.70 N 170 1 OP1 B DG 20 ? ? P B DG 20 ? ? OP2 B DG 20 ? ? 109.19 119.60 -10.41 1.50 N 171 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? "C2'" B DG 20 ? ? 99.97 105.90 -5.93 0.80 N 172 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 112.29 108.30 3.99 0.30 N 173 1 C2 B DG 20 ? ? N3 B DG 20 ? ? C4 B DG 20 ? ? 120.96 111.90 9.06 0.50 N 174 1 N3 B DG 20 ? ? C4 B DG 20 ? ? C5 B DG 20 ? ? 119.02 128.60 -9.58 0.50 N 175 1 C5 B DG 20 ? ? C6 B DG 20 ? ? N1 B DG 20 ? ? 115.38 111.50 3.88 0.50 N 176 1 C4 B DG 20 ? ? C5 B DG 20 ? ? N7 B DG 20 ? ? 100.97 110.80 -9.83 0.40 N 177 1 C5 B DG 20 ? ? N7 B DG 20 ? ? C8 B DG 20 ? ? 109.40 104.30 5.10 0.50 N 178 1 N7 B DG 20 ? ? C8 B DG 20 ? ? N9 B DG 20 ? ? 109.99 113.10 -3.11 0.50 N 179 1 N9 B DG 20 ? ? C4 B DG 20 ? ? C5 B DG 20 ? ? 111.92 105.40 6.52 0.40 N 180 1 C6 B DG 20 ? ? C5 B DG 20 ? ? N7 B DG 20 ? ? 138.59 130.40 8.19 0.60 N 181 1 N1 B DG 20 ? ? C6 B DG 20 ? ? O6 B DG 20 ? ? 124.31 119.90 4.41 0.60 N 182 1 C5 B DG 20 ? ? C6 B DG 20 ? ? O6 B DG 20 ? ? 120.31 128.60 -8.29 0.60 N # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 1 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MNF _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MNF _pdbx_nmr_representative.selection_criteria 'minimized average structure' # _pdbx_nmr_sample_details.contents ;2 mM 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3', 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample.component "5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3'-1" _pdbx_nmr_exptl_sample.concentration 2 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.05 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D 1H-1H COSY' 1 3 1 '2D 1H-1H NOESY' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MNF _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 391 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 265 _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 126 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2MNF _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin ? 1 'Bruker Biospin' processing TopSpin ? 2 Goddard 'chemical shift assignment' Sparky ? 3 Goddard 'data analysis' Sparky ? 4 Goddard 'peak picking' Sparky ? 5 Tripos 'geometry optimization' SYBYL ? 6 Tripos 'structure building' SYBYL ? 7 Tripos 'structure solution' SYBYL ? 8 Tripos 'noe to distance restraint conversion' MARDIGRAS ? 9 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' 'structure solution' Amber ? 10 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' 'geometry optimization' Amber ? 11 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' 'data analysis' Amber ? 12 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement Amber ? 13 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MNF 'double helix' 2MNF 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.299 -0.032 0.189 -13.822 -24.304 3.821 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DG 2 1_555 B DC 9 1_555 -0.471 -0.242 1.119 24.757 6.802 -3.720 2 A_DG2:DC19_B A 2 ? B 19 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 -0.127 -0.534 -1.409 -11.075 -14.540 0.198 3 A_DA3:DT18_B A 3 ? B 18 ? 20 1 1 A DC 4 1_555 B DG 7 1_555 0.779 -0.468 -0.779 -6.630 -7.903 2.028 4 A_DC4:DG17_B A 4 ? B 17 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.034 -0.093 -0.449 -25.389 -22.268 10.464 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.086 -0.031 -0.209 -32.081 -5.336 -2.681 6 A_DA6:DT15_B A 6 ? B 15 ? 20 1 1 A DG 7 1_555 B DC 4 1_555 -0.350 -0.072 -0.855 -36.419 -2.400 -8.788 7 A_DG7:DC14_B A 7 ? B 14 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.061 -0.004 1.287 -32.229 -23.534 -6.320 8 A_DT8:DA13_B A 8 ? B 13 ? 20 1 1 A DC 9 1_555 B DG 2 1_555 0.750 -0.187 0.444 -14.088 1.674 -0.037 9 A_DC9:DG12_B A 9 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DG 2 1_555 B DC 9 1_555 -0.135 -1.221 1.899 -7.994 14.442 18.085 -4.979 -0.840 0.738 37.362 20.681 24.439 1 AA_DC1DG2:DC19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DG 2 1_555 B DC 9 1_555 A DA 3 1_555 B DT 8 1_555 -0.460 -1.068 4.178 16.418 3.169 46.423 -1.581 2.095 3.747 3.875 -20.079 49.185 2 AA_DG2DA3:DT18DC19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DA 3 1_555 B DT 8 1_555 A DC 4 1_555 B DG 7 1_555 0.629 -0.813 2.929 -5.442 -0.765 35.245 -1.230 -1.725 2.820 -1.253 8.921 35.657 3 AA_DA3DC4:DG17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DC 4 1_555 B DG 7 1_555 A DT 5 1_555 B DA 6 1_555 1.441 -0.474 3.450 8.758 20.688 33.298 -3.256 -1.022 2.959 31.981 -13.538 39.989 4 AA_DC4DT5:DA16DG17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.498 -0.499 3.295 -5.815 25.660 24.382 -4.426 -0.007 1.995 46.717 10.588 35.724 5 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DA 6 1_555 B DT 5 1_555 A DG 7 1_555 B DC 4 1_555 0.189 -0.895 3.539 3.352 10.237 28.645 -3.812 0.333 3.049 19.826 -6.492 30.563 6 AA_DA6DG7:DC14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DG 7 1_555 B DC 4 1_555 A DT 8 1_555 B DA 3 1_555 -1.264 0.997 3.584 -9.762 -22.111 38.702 3.402 0.707 2.873 -30.069 13.275 45.382 7 AA_DG7DT8:DA13DC14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DT 8 1_555 B DA 3 1_555 A DC 9 1_555 B DG 2 1_555 1.208 -0.027 2.694 5.106 -6.978 43.627 0.510 -1.198 2.784 -9.280 -6.791 44.435 8 AA_DT8DC9:DG12DA13_BB A 8 ? B 13 ? A 9 ? B 12 ? # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _atom_sites.entry_id 2MNF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_