HEADER MEMBRANE PROTEIN 05-APR-14 2MNH TITLE REFINED STRUCTURE OF OUTER MEMBRANE PROTEIN X IN NANODISC BY MEASURING TITLE 2 RESIDUAL DIPOLAR COUPLINGS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN X; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-171; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 1403831; SOURCE 4 GENE: B0814, BN896_0667, JW0799, OMPX, YBIG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET3B KEYWDS BETA BARREL, MEMBRANE PROTEIN, RESIDUAL DIPOLAR COUPLING, NANODISC, KEYWDS 2 OMPX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.BIBOW,M.G.CARNEIRO,T.M.SABO,C.SCHWIEGK,S.BECKER,R.RIEK,D.LEE REVDAT 1 18-MAR-15 2MNH 0 JRNL AUTH S.BIBOW,M.G.CARNEIRO,T.M.SABO,C.SCHWIEGK,S.BECKER,R.RIEK, JRNL AUTH 2 D.LEE JRNL TITL MEASURING MEMBRANE PROTEIN BOND ORIENTATIONS IN NANODISCS JRNL TITL 2 VIA RESIDUAL DIPOLAR COUPLINGS. JRNL REF PROTEIN SCI. V. 23 851 2014 JRNL REFN ISSN 0961-8368 JRNL PMID 24752984 JRNL DOI 10.1002/PRO.2482 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-_PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-14. REMARK 100 THE RCSB ID CODE IS RCSB103826. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 OUTER MEMBRANE PROTEIN X, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D HNCA; 2D 1H- REMARK 210 15N HSQC; 2D 1H-15N COCAINE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, TOPSPIN, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 ALA A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-10 REMARK 470 RES CSSEQI ATOMS REMARK 470 PHE A 148 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 19 138.59 64.63 REMARK 500 1 PRO A 36 45.36 -83.26 REMARK 500 1 LYS A 59 -91.84 -53.30 REMARK 500 1 ASN A 74 -178.72 53.60 REMARK 500 1 TRP A 76 22.86 -140.85 REMARK 500 1 TYR A 98 17.71 59.10 REMARK 500 1 ASN A 116 138.43 175.66 REMARK 500 1 PRO A 117 48.09 -88.69 REMARK 500 1 ILE A 132 56.79 -119.15 REMARK 500 1 ARG A 133 -57.26 66.05 REMARK 500 2 MET A 18 -77.69 -96.24 REMARK 500 2 PRO A 36 41.97 -84.52 REMARK 500 2 ALA A 52 -156.22 51.23 REMARK 500 2 SER A 53 173.43 55.10 REMARK 500 2 GLU A 94 114.09 55.50 REMARK 500 2 TYR A 98 -168.89 46.05 REMARK 500 2 ASN A 116 64.09 -113.94 REMARK 500 2 ILE A 132 63.10 -114.74 REMARK 500 2 ARG A 133 -59.96 66.42 REMARK 500 3 PRO A 36 33.25 -87.17 REMARK 500 3 ALA A 52 96.73 -69.13 REMARK 500 3 TYR A 57 92.64 48.07 REMARK 500 3 LYS A 59 -100.37 -72.52 REMARK 500 3 GLN A 91 105.66 59.00 REMARK 500 3 THR A 97 25.34 43.29 REMARK 500 3 ILE A 132 59.26 -119.80 REMARK 500 3 ARG A 133 -57.46 64.65 REMARK 500 4 PRO A 36 40.29 -86.38 REMARK 500 4 LEU A 37 76.48 -111.18 REMARK 500 4 SER A 54 25.75 49.52 REMARK 500 4 THR A 97 -176.46 47.10 REMARK 500 4 ASN A 100 18.35 56.78 REMARK 500 4 ASN A 116 134.70 170.72 REMARK 500 4 PRO A 117 47.11 -88.03 REMARK 500 4 ILE A 132 67.22 -119.17 REMARK 500 4 ARG A 133 -60.74 66.45 REMARK 500 5 ASN A 19 -148.62 -169.82 REMARK 500 5 PRO A 36 41.39 -83.86 REMARK 500 5 LYS A 59 -75.58 -46.33 REMARK 500 5 ILE A 73 -88.09 -99.52 REMARK 500 5 GLN A 91 169.88 54.99 REMARK 500 5 THR A 93 179.14 56.91 REMARK 500 5 THR A 97 -172.03 -57.47 REMARK 500 5 ASN A 116 72.10 -118.05 REMARK 500 5 ARG A 133 -55.99 61.52 REMARK 500 6 MET A 18 -67.17 -98.02 REMARK 500 6 PRO A 36 34.59 -87.87 REMARK 500 6 LEU A 37 73.13 -108.64 REMARK 500 6 ASN A 58 83.14 -168.63 REMARK 500 6 ILE A 73 -39.68 -170.26 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 29 0.23 SIDE CHAIN REMARK 500 1 ARG A 50 0.32 SIDE CHAIN REMARK 500 1 ARG A 72 0.25 SIDE CHAIN REMARK 500 1 ARG A 131 0.30 SIDE CHAIN REMARK 500 1 ARG A 133 0.32 SIDE CHAIN REMARK 500 1 ARG A 147 0.21 SIDE CHAIN REMARK 500 2 ARG A 29 0.21 SIDE CHAIN REMARK 500 2 ARG A 50 0.24 SIDE CHAIN REMARK 500 2 ARG A 72 0.21 SIDE CHAIN REMARK 500 2 ARG A 131 0.32 SIDE CHAIN REMARK 500 2 ARG A 133 0.24 SIDE CHAIN REMARK 500 2 ARG A 147 0.27 SIDE CHAIN REMARK 500 3 ARG A 29 0.23 SIDE CHAIN REMARK 500 3 ARG A 50 0.22 SIDE CHAIN REMARK 500 3 ARG A 72 0.31 SIDE CHAIN REMARK 500 3 ARG A 131 0.29 SIDE CHAIN REMARK 500 3 ARG A 133 0.24 SIDE CHAIN REMARK 500 3 ARG A 147 0.31 SIDE CHAIN REMARK 500 4 ARG A 29 0.23 SIDE CHAIN REMARK 500 4 ARG A 50 0.32 SIDE CHAIN REMARK 500 4 ARG A 72 0.30 SIDE CHAIN REMARK 500 4 ARG A 131 0.31 SIDE CHAIN REMARK 500 4 ARG A 133 0.31 SIDE CHAIN REMARK 500 4 ARG A 147 0.27 SIDE CHAIN REMARK 500 5 ARG A 29 0.22 SIDE CHAIN REMARK 500 5 ARG A 50 0.22 SIDE CHAIN REMARK 500 5 ARG A 72 0.31 SIDE CHAIN REMARK 500 5 ARG A 131 0.27 SIDE CHAIN REMARK 500 5 ARG A 133 0.31 SIDE CHAIN REMARK 500 5 ARG A 147 0.32 SIDE CHAIN REMARK 500 6 ARG A 29 0.30 SIDE CHAIN REMARK 500 6 ARG A 50 0.23 SIDE CHAIN REMARK 500 6 ARG A 72 0.22 SIDE CHAIN REMARK 500 6 ARG A 131 0.21 SIDE CHAIN REMARK 500 6 ARG A 133 0.31 SIDE CHAIN REMARK 500 6 ARG A 147 0.23 SIDE CHAIN REMARK 500 7 ARG A 29 0.23 SIDE CHAIN REMARK 500 7 ARG A 50 0.25 SIDE CHAIN REMARK 500 7 ARG A 72 0.31 SIDE CHAIN REMARK 500 7 ARG A 131 0.26 SIDE CHAIN REMARK 500 7 ARG A 133 0.25 SIDE CHAIN REMARK 500 7 ARG A 147 0.29 SIDE CHAIN REMARK 500 8 ARG A 29 0.29 SIDE CHAIN REMARK 500 8 ARG A 50 0.29 SIDE CHAIN REMARK 500 8 ARG A 72 0.30 SIDE CHAIN REMARK 500 8 ARG A 131 0.30 SIDE CHAIN REMARK 500 8 ARG A 133 0.30 SIDE CHAIN REMARK 500 8 ARG A 147 0.31 SIDE CHAIN REMARK 500 9 ARG A 29 0.20 SIDE CHAIN REMARK 500 9 ARG A 50 0.28 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 60 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19892 RELATED DB: BMRB DBREF 2MNH A 1 148 UNP U6N4S7 U6N4S7_ECOLI 24 171 SEQADV 2MNH ASN A 100 UNP U6N4S7 HIS 123 CONFLICT SEQRES 1 A 148 ALA THR SER THR VAL THR GLY GLY TYR ALA GLN SER ASP SEQRES 2 A 148 ALA GLN GLY GLN MET ASN LYS MET GLY GLY PHE ASN LEU SEQRES 3 A 148 LYS TYR ARG TYR GLU GLU ASP ASN SER PRO LEU GLY VAL SEQRES 4 A 148 ILE GLY SER PHE THR TYR THR GLU LYS SER ARG THR ALA SEQRES 5 A 148 SER SER GLY ASP TYR ASN LYS ASN GLN TYR TYR GLY ILE SEQRES 6 A 148 THR ALA GLY PRO ALA TYR ARG ILE ASN ASP TRP ALA SER SEQRES 7 A 148 ILE TYR GLY VAL VAL GLY VAL GLY TYR GLY LYS PHE GLN SEQRES 8 A 148 THR THR GLU TYR PRO THR TYR LYS ASN ASP THR SER ASP SEQRES 9 A 148 TYR GLY PHE SER TYR GLY ALA GLY LEU GLN PHE ASN PRO SEQRES 10 A 148 MET GLU ASN VAL ALA LEU ASP PHE SER TYR GLU GLN SER SEQRES 11 A 148 ARG ILE ARG SER VAL ASP VAL GLY THR TRP ILE ALA GLY SEQRES 12 A 148 VAL GLY TYR ARG PHE SHEET 1 A 9 SER A 3 GLN A 15 0 SHEET 2 A 9 MET A 21 GLU A 31 -1 O GLY A 23 N ALA A 10 SHEET 3 A 9 GLY A 38 LYS A 48 -1 O GLY A 41 N TYR A 28 SHEET 4 A 9 GLN A 61 ILE A 73 -1 O THR A 66 N SER A 42 SHEET 5 A 9 ALA A 77 LYS A 89 -1 O TYR A 87 N TYR A 63 SHEET 6 A 9 ASP A 104 PHE A 115 -1 O GLY A 110 N VAL A 82 SHEET 7 A 9 ALA A 122 ARG A 131 -1 O LEU A 123 N PHE A 115 SHEET 8 A 9 ASP A 136 ARG A 147 -1 O THR A 139 N GLU A 128 SHEET 9 A 9 SER A 3 GLN A 15 -1 N VAL A 5 O TYR A 146 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1