data_2MOE # _entry.id 2MOE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MOE pdb_00002moe 10.2210/pdb2moe/pdb RCSB RCSB103857 ? ? BMRB 19939 ? ? WWPDB D_1000103857 ? ? # _pdbx_database_related.db_id 19939 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MOE _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-04-24 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Williams, D.C.' 1 'Walavalkar, N.M.' 2 # _citation.id primary _citation.title ;Solution structure and intramolecular exchange of methyl-cytosine binding domain protein 4 (MBD4) on DNA suggests a mechanism to scan for mCpG/TpG mismatches. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 42 _citation.page_first 11218 _citation.page_last 11232 _citation.year 2015 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25183517 _citation.pdbx_database_id_DOI 10.1093/nar/gku782 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Walavalkar, N.M.' 1 ? primary 'Cramer, J.M.' 2 ? primary 'Buchwald, W.A.' 3 ? primary 'Scarsdale, J.N.' 4 ? primary 'Williams, D.C.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-CpG-binding domain protein 4' 8088.242 1 3.2.2.- ? 'unp residues 80-148' ? 2 polymer syn ;DNA (5'-D(*GP*GP*AP*TP*(5CM)P*GP*GP*CP*TP*C)-3') ; 3075.031 1 ? ? ? MBD4mbd 3 polymer syn ;DNA (5'-D(*GP*AP*GP*CP*(5CM)P*GP*AP*TP*CP*C)-3') ; 3044.021 1 ? ? ? DNArev # _entity_name_com.entity_id 1 _entity_name_com.name 'Methyl-CpG-binding endonuclease 1, Methyl-CpG-binding protein MBD4, Mismatch-specific DNA N-glycosylase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GSTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYLHKNGETSLKPEDFDFTVLSK GSTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYLHKNGETSLKPEDFDFTVLSK A ? 2 polydeoxyribonucleotide no yes '(DG)(DG)(DA)(DT)(5CM)(DG)(DG)(DC)(DT)(DC)' GGATCGGCTC B ? 3 polydeoxyribonucleotide no yes '(DG)(DA)(DG)(DC)(5CM)(DG)(DA)(DT)(DC)(DC)' GAGCCGATCC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 THR n 1 4 GLU n 1 5 CYS n 1 6 ARG n 1 7 LYS n 1 8 SER n 1 9 VAL n 1 10 PRO n 1 11 CYS n 1 12 GLY n 1 13 TRP n 1 14 GLU n 1 15 ARG n 1 16 VAL n 1 17 VAL n 1 18 LYS n 1 19 GLN n 1 20 ARG n 1 21 LEU n 1 22 PHE n 1 23 GLY n 1 24 LYS n 1 25 THR n 1 26 ALA n 1 27 GLY n 1 28 ARG n 1 29 PHE n 1 30 ASP n 1 31 VAL n 1 32 TYR n 1 33 PHE n 1 34 ILE n 1 35 SER n 1 36 PRO n 1 37 GLN n 1 38 GLY n 1 39 LEU n 1 40 LYS n 1 41 PHE n 1 42 ARG n 1 43 SER n 1 44 LYS n 1 45 SER n 1 46 SER n 1 47 LEU n 1 48 ALA n 1 49 ASN n 1 50 TYR n 1 51 LEU n 1 52 HIS n 1 53 LYS n 1 54 ASN n 1 55 GLY n 1 56 GLU n 1 57 THR n 1 58 SER n 1 59 LEU n 1 60 LYS n 1 61 PRO n 1 62 GLU n 1 63 ASP n 1 64 PHE n 1 65 ASP n 1 66 PHE n 1 67 THR n 1 68 VAL n 1 69 LEU n 1 70 SER n 1 71 LYS n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DT n 2 5 5CM n 2 6 DG n 2 7 DG n 2 8 DC n 2 9 DT n 2 10 DC n 3 1 DG n 3 2 DA n 3 3 DG n 3 4 DC n 3 5 5CM n 3 6 DG n 3 7 DA n 3 8 DT n 3 9 DC n 3 10 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MBD4, MED1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MBD4_HUMAN O95243 1 TECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYLHKNGETSLKPEDFDFTVLSK 80 ? 2 PDB 2MOE 2MOE 2 ? ? ? 3 PDB 2MOE 2MOE 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MOE A 3 ? 71 ? O95243 80 ? 148 ? 80 148 2 2 2MOE B 1 ? 10 ? 2MOE 201 ? 210 ? 201 210 3 3 2MOE C 1 ? 10 ? 2MOE 211 ? 220 ? 211 220 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2MOE GLY A 1 ? UNP O95243 ? ? 'expression tag' 78 1 1 2MOE SER A 2 ? UNP O95243 ? ? 'expression tag' 79 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '3D HNCO' 1 3 1 '3D HNCA' 1 4 1 '3D CBCA(CO)NH' 1 5 1 '3D HNCACB' 1 6 1 '3D HBHA(CO)NH' 1 7 1 '3D C(CO)NH' 1 8 1 '3D HCCH-TOCSY' 1 9 1 '3D 1H-15N NOESY' 1 10 1 '3D 1H-13C NOESY aliphatic' 1 11 1 '2D 1H-13C HSQC aromatic' 1 12 2 '3D HNCO' 1 13 1 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.2-1.0 mM [U-99% 13C; U-99% 15N] MBD4mbd, 0.2-1.0 mM DNAfor, 0.2-1.0 mM DNArev, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.2-1.0 mM [U-13C; U-15N; U-2H] MBD4mbd, 0.2-1.0 mM DNAfor, 0.2-1.0 mM DNArev, 12 mg/mL Pf1 phage, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MOE _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MOE _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MOE _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 1 CCPN 'data analysis' CcpNmr 2.3 2 CCPN 'peak picking' CcpNmr 2.3 3 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MOE _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MOE _struct.title 'Solution structure of MBD4 methyl-cytosine binding domain bound to methylated DNA' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MOE _struct_keywords.pdbx_keywords Hydrolase/DNA _struct_keywords.text 'PROTEIN/DNA, Methylated DNA, Hydrolase-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 43 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 55 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 120 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 132 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 4 "O3'" ? ? ? 1_555 B 5CM 5 P ? ? B DT 204 B 5CM 205 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale both ? B 5CM 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B 5CM 205 B DG 206 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale3 covale both ? C DC 4 "O3'" ? ? ? 1_555 C 5CM 5 P ? ? C DC 214 C 5CM 215 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale4 covale both ? C 5CM 5 "O3'" ? ? ? 1_555 C DG 6 P ? ? C 5CM 215 C DG 216 1_555 ? ? ? ? ? ? ? 1.610 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 201 C DC 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 201 C DC 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 201 C DC 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 202 C DC 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 202 C DC 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 202 C DC 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 203 C DT 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 203 C DT 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 7 N1 ? ? B DT 204 C DA 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 7 N6 ? ? B DT 204 C DA 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B 5CM 5 N3 ? ? ? 1_555 C DG 6 N1 ? ? B 5CM 205 C DG 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B 5CM 5 N4 ? ? ? 1_555 C DG 6 O6 ? ? B 5CM 205 C DG 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B 5CM 5 O2 ? ? ? 1_555 C DG 6 N2 ? ? B 5CM 205 C DG 216 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C 5CM 5 N3 ? ? B DG 206 C 5CM 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C 5CM 5 O2 ? ? B DG 206 C 5CM 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C 5CM 5 N4 ? ? B DG 206 C 5CM 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 207 C DC 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 207 C DC 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 207 C DC 214 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 208 C DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 208 C DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 208 C DG 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 2 N1 ? ? B DT 209 C DA 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 2 N6 ? ? B DT 209 C DA 212 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 210 C DG 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 210 C DG 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 210 C DG 211 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 14 ? GLN A 19 ? GLU A 91 GLN A 96 A 2 PHE A 29 ? ILE A 34 ? PHE A 106 ILE A 111 A 3 LYS A 40 ? PHE A 41 ? LYS A 117 PHE A 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 16 ? N VAL A 93 O TYR A 32 ? O TYR A 109 A 2 3 N PHE A 33 ? N PHE A 110 O PHE A 41 ? O PHE A 118 # _atom_sites.entry_id 2MOE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 78 78 GLY GLY A . n A 1 2 SER 2 79 79 SER SER A . n A 1 3 THR 3 80 80 THR THR A . n A 1 4 GLU 4 81 81 GLU GLU A . n A 1 5 CYS 5 82 82 CYS CYS A . n A 1 6 ARG 6 83 83 ARG ARG A . n A 1 7 LYS 7 84 84 LYS LYS A . n A 1 8 SER 8 85 85 SER SER A . n A 1 9 VAL 9 86 86 VAL VAL A . n A 1 10 PRO 10 87 87 PRO PRO A . n A 1 11 CYS 11 88 88 CYS CYS A . n A 1 12 GLY 12 89 89 GLY GLY A . n A 1 13 TRP 13 90 90 TRP TRP A . n A 1 14 GLU 14 91 91 GLU GLU A . n A 1 15 ARG 15 92 92 ARG ARG A . n A 1 16 VAL 16 93 93 VAL VAL A . n A 1 17 VAL 17 94 94 VAL VAL A . n A 1 18 LYS 18 95 95 LYS LYS A . n A 1 19 GLN 19 96 96 GLN GLN A . n A 1 20 ARG 20 97 97 ARG ARG A . n A 1 21 LEU 21 98 98 LEU LEU A . n A 1 22 PHE 22 99 99 PHE PHE A . n A 1 23 GLY 23 100 100 GLY GLY A . n A 1 24 LYS 24 101 101 LYS LYS A . n A 1 25 THR 25 102 102 THR THR A . n A 1 26 ALA 26 103 103 ALA ALA A . n A 1 27 GLY 27 104 104 GLY GLY A . n A 1 28 ARG 28 105 105 ARG ARG A . n A 1 29 PHE 29 106 106 PHE PHE A . n A 1 30 ASP 30 107 107 ASP ASP A . n A 1 31 VAL 31 108 108 VAL VAL A . n A 1 32 TYR 32 109 109 TYR TYR A . n A 1 33 PHE 33 110 110 PHE PHE A . n A 1 34 ILE 34 111 111 ILE ILE A . n A 1 35 SER 35 112 112 SER SER A . n A 1 36 PRO 36 113 113 PRO PRO A . n A 1 37 GLN 37 114 114 GLN GLN A . n A 1 38 GLY 38 115 115 GLY GLY A . n A 1 39 LEU 39 116 116 LEU LEU A . n A 1 40 LYS 40 117 117 LYS LYS A . n A 1 41 PHE 41 118 118 PHE PHE A . n A 1 42 ARG 42 119 119 ARG ARG A . n A 1 43 SER 43 120 120 SER SER A . n A 1 44 LYS 44 121 121 LYS LYS A . n A 1 45 SER 45 122 122 SER SER A . n A 1 46 SER 46 123 123 SER SER A . n A 1 47 LEU 47 124 124 LEU LEU A . n A 1 48 ALA 48 125 125 ALA ALA A . n A 1 49 ASN 49 126 126 ASN ASN A . n A 1 50 TYR 50 127 127 TYR TYR A . n A 1 51 LEU 51 128 128 LEU LEU A . n A 1 52 HIS 52 129 129 HIS HIS A . n A 1 53 LYS 53 130 130 LYS LYS A . n A 1 54 ASN 54 131 131 ASN ASN A . n A 1 55 GLY 55 132 132 GLY GLY A . n A 1 56 GLU 56 133 133 GLU GLU A . n A 1 57 THR 57 134 134 THR THR A . n A 1 58 SER 58 135 135 SER SER A . n A 1 59 LEU 59 136 136 LEU LEU A . n A 1 60 LYS 60 137 137 LYS LYS A . n A 1 61 PRO 61 138 138 PRO PRO A . n A 1 62 GLU 62 139 139 GLU GLU A . n A 1 63 ASP 63 140 140 ASP ASP A . n A 1 64 PHE 64 141 141 PHE PHE A . n A 1 65 ASP 65 142 142 ASP ASP A . n A 1 66 PHE 66 143 143 PHE PHE A . n A 1 67 THR 67 144 144 THR THR A . n A 1 68 VAL 68 145 145 VAL VAL A . n A 1 69 LEU 69 146 146 LEU LEU A . n A 1 70 SER 70 147 147 SER SER A . n A 1 71 LYS 71 148 148 LYS LYS A . n B 2 1 DG 1 201 201 DG DG B . n B 2 2 DG 2 202 202 DG DG B . n B 2 3 DA 3 203 203 DA DA B . n B 2 4 DT 4 204 204 DT DT B . n B 2 5 5CM 5 205 205 5CM 5CM B . n B 2 6 DG 6 206 206 DG DG B . n B 2 7 DG 7 207 207 DG DG B . n B 2 8 DC 8 208 208 DC DC B . n B 2 9 DT 9 209 209 DT DT B . n B 2 10 DC 10 210 210 DC DC B . n C 3 1 DG 1 211 211 DG DG C . n C 3 2 DA 2 212 212 DA DA C . n C 3 3 DG 3 213 213 DG DG C . n C 3 4 DC 4 214 214 DC DC C . n C 3 5 5CM 5 215 215 5CM 5CM C . n C 3 6 DG 6 216 216 DG DG C . n C 3 7 DA 7 217 217 DA DA C . n C 3 8 DT 8 218 218 DT DT C . n C 3 9 DC 9 219 219 DC DC C . n C 3 10 DC 10 220 220 DC DC C . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B 5CM 5 B 5CM 205 ? DC ? 2 C 5CM 5 C 5CM 215 ? DC ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-09-10 2 'Structure model' 1 1 2014-11-19 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id MBD4mbd-1 ? 0.2-1.0 mM '[U-99% 13C; U-99% 15N]' 1 DNAfor-2 ? 0.2-1.0 mM ? 1 DNArev-3 ? 0.2-1.0 mM ? 1 MBD4mbd-4 ? 0.2-1.0 mM '[U-13C; U-15N; U-2H]' 2 DNAfor-5 ? 0.2-1.0 mM ? 2 DNArev-6 ? 0.2-1.0 mM ? 2 'Pf1 phage-7' 12 ? mg/mL ? 2 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 7 HH12 A ARG 105 ? ? H42 C DC 214 ? ? 1.27 2 7 O6 B DG 207 ? ? H41 C DC 214 ? ? 1.60 3 11 O6 B DG 207 ? ? H41 C DC 214 ? ? 1.59 4 14 HG A CYS 82 ? ? H A VAL 86 ? ? 1.23 5 14 HG A SER 79 ? ? H A THR 80 ? ? 1.29 6 18 OD1 A ASN 131 ? ? H A GLU 133 ? ? 1.55 7 18 O A LEU 128 ? ? OD1 A ASN 131 ? ? 2.17 8 20 H3 A GLY 78 ? ? H A SER 79 ? ? 1.35 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 3 C6 C DT 218 ? ? C5 C DT 218 ? ? C7 C DT 218 ? ? 119.25 122.90 -3.65 0.60 N 2 6 C6 C DT 218 ? ? C5 C DT 218 ? ? C7 C DT 218 ? ? 119.26 122.90 -3.64 0.60 N 3 13 C6 B DT 204 ? ? C5 B DT 204 ? ? C7 B DT 204 ? ? 119.20 122.90 -3.70 0.60 N 4 14 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 119.28 122.90 -3.62 0.60 N 5 14 C6 C DT 218 ? ? C5 C DT 218 ? ? C7 C DT 218 ? ? 119.10 122.90 -3.80 0.60 N 6 18 C6 B DT 204 ? ? C5 B DT 204 ? ? C7 B DT 204 ? ? 119.26 122.90 -3.64 0.60 N 7 18 C6 B DT 209 ? ? C5 B DT 209 ? ? C7 B DT 209 ? ? 119.27 122.90 -3.63 0.60 N 8 19 C6 C DT 218 ? ? C5 C DT 218 ? ? C7 C DT 218 ? ? 119.29 122.90 -3.61 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 81 ? ? -106.51 -164.34 2 1 ARG A 83 ? ? -55.54 -162.96 3 1 SER A 85 ? ? -177.20 -9.21 4 1 LEU A 98 ? ? -60.51 -96.66 5 1 ALA A 103 ? ? -29.39 111.38 6 1 SER A 112 ? ? -43.34 167.32 7 1 ARG A 119 ? ? -146.00 11.76 8 1 SER A 147 ? ? 61.68 123.02 9 2 SER A 79 ? ? 73.97 -44.35 10 2 GLU A 81 ? ? -176.33 81.49 11 2 CYS A 82 ? ? 64.79 -150.34 12 2 ARG A 83 ? ? 54.68 6.75 13 2 SER A 85 ? ? -165.92 -36.50 14 2 ALA A 103 ? ? -32.06 105.94 15 2 PHE A 143 ? ? -47.14 173.97 16 3 CYS A 82 ? ? 37.64 76.07 17 3 SER A 85 ? ? 175.38 -92.52 18 3 LEU A 98 ? ? -68.91 -104.77 19 3 ALA A 103 ? ? -35.29 127.01 20 3 SER A 147 ? ? 35.05 -124.99 21 4 GLU A 81 ? ? 57.00 -164.55 22 4 CYS A 82 ? ? 66.20 71.15 23 4 SER A 85 ? ? 74.97 -19.54 24 4 PHE A 99 ? ? -131.99 -98.40 25 4 ALA A 103 ? ? -29.15 131.38 26 4 SER A 147 ? ? -124.43 -87.91 27 5 SER A 79 ? ? -131.98 -44.93 28 5 CYS A 82 ? ? -168.41 5.44 29 5 ARG A 83 ? ? -100.18 -61.79 30 5 LYS A 84 ? ? 54.03 15.04 31 5 VAL A 86 ? ? 40.69 72.53 32 5 THR A 144 ? ? -178.07 -179.82 33 5 LEU A 146 ? ? -50.90 92.86 34 5 SER A 147 ? ? -171.02 51.84 35 6 THR A 80 ? ? 50.25 -148.25 36 6 GLU A 81 ? ? 57.26 -79.39 37 6 CYS A 82 ? ? 52.92 -160.49 38 6 SER A 85 ? ? 173.13 -99.44 39 6 ALA A 103 ? ? -36.96 151.99 40 6 ARG A 119 ? ? -150.35 22.19 41 6 GLU A 133 ? ? -90.41 -71.94 42 6 THR A 134 ? ? 61.87 -8.38 43 6 SER A 147 ? ? -150.53 -45.96 44 7 CYS A 82 ? ? -156.00 -108.02 45 7 LYS A 84 ? ? 72.33 134.66 46 7 SER A 85 ? ? 72.74 -19.38 47 7 LEU A 98 ? ? -82.11 -107.33 48 7 ALA A 103 ? ? -37.59 161.96 49 7 SER A 135 ? ? -76.90 24.66 50 7 LEU A 146 ? ? -177.08 148.09 51 8 SER A 79 ? ? -130.55 -61.01 52 8 SER A 85 ? ? -140.48 -40.16 53 8 LEU A 98 ? ? -59.66 -96.07 54 8 ALA A 103 ? ? -29.06 114.85 55 8 SER A 147 ? ? -160.07 -154.25 56 9 ARG A 83 ? ? -151.69 30.36 57 9 LYS A 84 ? ? -71.47 42.48 58 9 PHE A 99 ? ? -125.11 -93.37 59 9 ALA A 103 ? ? -32.01 127.98 60 9 LEU A 146 ? ? 46.08 -88.63 61 9 SER A 147 ? ? -36.83 86.48 62 10 SER A 79 ? ? 56.76 160.12 63 10 CYS A 82 ? ? 69.50 -36.80 64 10 ARG A 83 ? ? 58.65 147.81 65 10 LYS A 84 ? ? 52.08 -85.33 66 10 VAL A 86 ? ? 41.29 80.82 67 10 ALA A 103 ? ? -39.20 163.08 68 10 PHE A 143 ? ? -58.01 -113.95 69 10 THR A 144 ? ? 55.92 163.23 70 10 LEU A 146 ? ? -85.51 -73.88 71 10 SER A 147 ? ? -156.76 -74.09 72 11 SER A 79 ? ? 78.68 -9.89 73 11 LYS A 84 ? ? -73.36 -104.08 74 11 SER A 85 ? ? 48.95 89.31 75 11 VAL A 86 ? ? 62.31 82.53 76 11 PHE A 143 ? ? -68.92 68.26 77 12 SER A 79 ? ? -85.33 -72.56 78 12 SER A 85 ? ? 55.31 157.58 79 12 PHE A 99 ? ? -143.49 -102.53 80 12 ALA A 103 ? ? -28.42 142.38 81 12 SER A 147 ? ? 56.71 162.67 82 13 THR A 80 ? ? 59.75 1.95 83 13 GLU A 81 ? ? 62.62 116.48 84 13 LYS A 84 ? ? -110.19 -143.02 85 13 SER A 85 ? ? 74.11 -55.77 86 13 PHE A 99 ? ? -123.97 -83.58 87 13 PHE A 143 ? ? -65.19 -121.56 88 13 VAL A 145 ? ? 53.86 -82.92 89 14 SER A 79 ? ? 50.19 -154.06 90 14 LYS A 84 ? ? -172.14 71.34 91 14 SER A 85 ? ? -163.23 -47.25 92 14 ALA A 103 ? ? -37.56 161.71 93 14 ARG A 119 ? ? -152.47 16.87 94 14 LEU A 146 ? ? -19.24 87.67 95 15 SER A 85 ? ? -168.04 -27.13 96 15 PHE A 99 ? ? -157.83 -96.30 97 15 ALA A 103 ? ? -38.65 162.69 98 15 GLU A 133 ? ? -75.08 21.17 99 15 THR A 134 ? ? -38.69 91.15 100 15 SER A 135 ? ? -130.28 -65.02 101 15 THR A 144 ? ? -166.65 -139.72 102 15 VAL A 145 ? ? -125.16 -52.60 103 15 SER A 147 ? ? 41.84 -168.97 104 16 THR A 80 ? ? -90.94 -70.96 105 16 ARG A 83 ? ? 69.51 134.54 106 16 SER A 85 ? ? -172.32 72.96 107 16 VAL A 86 ? ? 55.73 72.41 108 16 PHE A 99 ? ? -140.94 -92.46 109 16 ALA A 103 ? ? -27.94 126.05 110 16 THR A 144 ? ? 78.60 165.54 111 16 VAL A 145 ? ? -63.04 -80.97 112 16 LEU A 146 ? ? 50.86 -87.82 113 17 GLU A 81 ? ? 46.67 -105.78 114 17 CYS A 82 ? ? -152.60 -35.06 115 17 LYS A 84 ? ? 175.58 -56.47 116 17 SER A 85 ? ? -101.59 -62.17 117 17 PHE A 99 ? ? -126.83 -100.47 118 17 ALA A 103 ? ? -28.43 138.93 119 17 LEU A 146 ? ? -96.00 -67.62 120 17 SER A 147 ? ? -163.39 -127.82 121 18 CYS A 82 ? ? -143.03 -154.06 122 18 ARG A 83 ? ? 71.84 -23.45 123 18 SER A 85 ? ? -173.63 -78.12 124 18 PHE A 99 ? ? -108.63 -86.40 125 18 ARG A 119 ? ? -148.28 17.82 126 18 THR A 144 ? ? 161.26 140.05 127 18 VAL A 145 ? ? -39.76 159.41 128 18 LEU A 146 ? ? -16.85 86.99 129 18 SER A 147 ? ? -70.56 -151.34 130 19 GLU A 81 ? ? 52.99 -144.49 131 19 LYS A 84 ? ? -130.06 -76.82 132 19 SER A 85 ? ? -174.19 -35.36 133 19 ARG A 119 ? ? -143.05 15.88 134 19 PHE A 143 ? ? -67.51 -179.60 135 19 THR A 144 ? ? 79.77 142.06 136 19 LEU A 146 ? ? 40.38 -143.96 137 20 THR A 80 ? ? 65.34 -4.72 138 20 CYS A 82 ? ? -140.26 -36.84 139 20 ARG A 83 ? ? 40.59 -160.80 140 20 LYS A 84 ? ? -65.59 96.49 141 20 SER A 85 ? ? -179.18 -104.27 142 20 PHE A 143 ? ? -57.90 -108.67 143 20 THR A 144 ? ? 42.15 -165.85 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 148 ? O ? A LYS 71 O 2 2 Y 1 A LYS 148 ? O ? A LYS 71 O 3 3 Y 1 A LYS 148 ? O ? A LYS 71 O 4 4 Y 1 A LYS 148 ? O ? A LYS 71 O 5 5 Y 1 A LYS 148 ? O ? A LYS 71 O 6 6 Y 1 A LYS 148 ? O ? A LYS 71 O 7 7 Y 1 A LYS 148 ? O ? A LYS 71 O 8 8 Y 1 A LYS 148 ? O ? A LYS 71 O 9 9 Y 1 A LYS 148 ? O ? A LYS 71 O 10 10 Y 1 A LYS 148 ? O ? A LYS 71 O 11 11 Y 1 A LYS 148 ? O ? A LYS 71 O 12 12 Y 1 A LYS 148 ? O ? A LYS 71 O 13 13 Y 1 A LYS 148 ? O ? A LYS 71 O 14 14 Y 1 A LYS 148 ? O ? A LYS 71 O 15 15 Y 1 A LYS 148 ? O ? A LYS 71 O 16 16 Y 1 A LYS 148 ? O ? A LYS 71 O 17 17 Y 1 A LYS 148 ? O ? A LYS 71 O 18 18 Y 1 A LYS 148 ? O ? A LYS 71 O 19 19 Y 1 A LYS 148 ? O ? A LYS 71 O 20 20 Y 1 A LYS 148 ? O ? A LYS 71 O # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MOE 'double helix' 2MOE 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 10 1_555 0.011 -0.173 0.166 5.494 -3.786 1.580 1 B_DG201:DC220_C B 201 ? C 220 ? 19 1 1 B DG 2 1_555 C DC 9 1_555 -0.316 -0.252 -0.009 0.730 -10.165 0.060 2 B_DG202:DC219_C B 202 ? C 219 ? 19 1 1 B DA 3 1_555 C DT 8 1_555 0.077 -0.034 0.065 2.456 -12.127 -0.140 3 B_DA203:DT218_C B 203 ? C 218 ? 20 1 1 B DT 4 1_555 C DA 7 1_555 -0.113 -0.091 0.063 0.705 -10.840 -2.690 4 B_DT204:DA217_C B 204 ? C 217 ? 20 1 1 B 5CM 5 1_555 C DG 6 1_555 0.028 -0.253 0.278 0.156 -19.024 0.477 5 B_5CM205:DG216_C B 205 ? C 216 ? 19 1 1 B DG 6 1_555 C 5CM 5 1_555 0.030 -0.185 -0.167 -5.979 -19.584 -0.087 6 B_DG206:5CM215_C B 206 ? C 215 ? 19 1 1 B DG 7 1_555 C DC 4 1_555 -0.202 -0.249 0.129 1.149 -4.789 -6.871 7 B_DG207:DC214_C B 207 ? C 214 ? 19 1 1 B DC 8 1_555 C DG 3 1_555 -0.005 -0.173 0.020 0.867 -8.057 -4.943 8 B_DC208:DG213_C B 208 ? C 213 ? 19 1 1 B DT 9 1_555 C DA 2 1_555 -0.140 -0.158 0.172 -1.454 -17.677 -4.041 9 B_DT209:DA212_C B 209 ? C 212 ? 20 1 1 B DC 10 1_555 C DG 1 1_555 0.095 -0.342 0.037 -1.422 -15.105 -2.711 10 B_DC210:DG211_C B 210 ? C 211 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 10 1_555 B DG 2 1_555 C DC 9 1_555 -0.168 -0.939 3.410 1.301 6.445 30.141 -3.037 0.572 3.136 12.210 -2.464 30.834 1 BB_DG201DG202:DC219DC220_CC B 201 ? C 220 ? B 202 ? C 219 ? 1 B DG 2 1_555 C DC 9 1_555 B DA 3 1_555 C DT 8 1_555 0.043 -0.422 3.245 0.137 6.705 36.151 -1.566 -0.049 3.120 10.691 -0.218 36.748 2 BB_DG202DA203:DT218DC219_CC B 202 ? C 219 ? B 203 ? C 218 ? 1 B DA 3 1_555 C DT 8 1_555 B DT 4 1_555 C DA 7 1_555 -0.213 -0.789 3.267 -0.279 3.169 32.772 -1.925 0.329 3.181 5.600 0.493 32.921 3 BB_DA203DT204:DA217DT218_CC B 203 ? C 218 ? B 204 ? C 217 ? 1 B DT 4 1_555 C DA 7 1_555 B 5CM 5 1_555 C DG 6 1_555 -0.064 -0.264 3.499 0.025 -2.332 37.014 -0.080 0.105 3.508 -3.669 -0.040 37.085 4 BB_DT2045CM205:DG216DA217_CC B 204 ? C 217 ? B 205 ? C 216 ? 1 B 5CM 5 1_555 C DG 6 1_555 B DG 6 1_555 C 5CM 5 1_555 -0.209 -0.147 5.263 1.551 -24.559 38.019 3.441 0.502 4.547 -33.739 -2.131 45.039 5 BB_5CM205DG206:5CM215DG216_CC B 205 ? C 216 ? B 206 ? C 215 ? 1 B DG 6 1_555 C 5CM 5 1_555 B DG 7 1_555 C DC 4 1_555 -0.340 -0.162 3.252 -3.790 -5.217 36.339 0.453 0.022 3.261 -8.284 6.018 36.888 6 BB_DG206DG207:DC2145CM215_CC B 206 ? C 215 ? B 207 ? C 214 ? 1 B DG 7 1_555 C DC 4 1_555 B DC 8 1_555 C DG 3 1_555 0.088 -0.483 3.499 0.613 0.159 35.057 -0.827 -0.047 3.498 0.263 -1.018 35.063 7 BB_DG207DC208:DG213DC214_CC B 207 ? C 214 ? B 208 ? C 213 ? 1 B DC 8 1_555 C DG 3 1_555 B DT 9 1_555 C DA 2 1_555 -0.112 -0.383 3.548 -0.067 3.538 34.743 -1.215 0.177 3.493 5.907 0.111 34.917 8 BB_DC208DT209:DA212DG213_CC B 208 ? C 213 ? B 209 ? C 212 ? 1 B DT 9 1_555 C DA 2 1_555 B DC 10 1_555 C DG 1 1_555 -0.004 -0.205 3.359 0.000 -0.151 36.845 -0.303 0.007 3.360 -0.238 0.001 36.845 9 BB_DT209DC210:DG211DA212_CC B 209 ? C 212 ? B 210 ? C 211 ? #