HEADER MEMBRANE PROTEIN 27-APR-14 2MOM TITLE STRUCTURAL INSIGHTS OF TM DOMAIN OF LAMP-2A IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 369-410; COMPND 5 SYNONYM: LAMP-2, LYSOSOME-ASSOCIATED MEMBRANE PROTEIN 2, CD107 COMPND 6 ANTIGEN-LIKE FAMILY MEMBER B; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LAMP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PMAL2PX KEYWDS PROTEIN, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TJANDRA,A.ROUT REVDAT 3 01-MAY-24 2MOM 1 REMARK REVDAT 2 14-JAN-15 2MOM 1 JRNL REVDAT 1 29-OCT-14 2MOM 0 JRNL AUTH A.K.ROUT,M.P.STRUB,G.PISZCZEK,N.TJANDRA JRNL TITL STRUCTURE OF TRANSMEMBRANE DOMAIN OF LYSOSOME-ASSOCIATED JRNL TITL 2 MEMBRANE PROTEIN TYPE 2A (LAMP-2A) REVEALS KEY FEATURES FOR JRNL TITL 3 SUBSTRATE SPECIFICITY IN CHAPERONE-MEDIATED AUTOPHAGY. JRNL REF J.BIOL.CHEM. V. 289 35111 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25342746 JRNL DOI 10.1074/JBC.M114.609446 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000103865. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 0.025 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 15N] TM DOMAIN OF REMARK 210 LAMP2A, 90% H2O/10% D2O; 0.5 MM REMARK 210 [U-99% 13C; U-99% 15N] TM DOMAIN REMARK 210 OF LAMP2A, 90% H2O/10% D2O; 0.5 REMARK 210 MM [U-99% 13C; U-99% 15N] TM REMARK 210 DOMAIN OF LAMP2A, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-15N NOESY; 4D HCCH REMARK 210 NOESY; 3D 13C FILTER NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, CARA, PIPP, X-PLOR NIH REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 377 50.25 -153.08 REMARK 500 1 LYS A 401 10.88 57.35 REMARK 500 1 HIS A 402 82.76 43.59 REMARK 500 1 VAL B 377 49.29 -146.17 REMARK 500 1 ALA B 380 -19.96 -42.15 REMARK 500 1 LYS B 401 113.01 57.76 REMARK 500 1 VAL C 377 73.34 44.12 REMARK 500 1 ALA C 380 -19.82 -40.70 REMARK 500 1 LYS C 401 151.20 -36.48 REMARK 500 1 HIS C 402 92.24 49.47 REMARK 500 2 HIS A 402 88.84 43.76 REMARK 500 2 PHE B 375 83.94 -62.53 REMARK 500 2 VAL B 377 72.20 47.65 REMARK 500 2 LYS B 401 86.35 57.67 REMARK 500 2 VAL C 377 77.42 -156.16 REMARK 500 2 ALA C 380 -19.88 -41.64 REMARK 500 2 LYS C 401 111.61 54.81 REMARK 500 3 HIS A 402 85.48 44.61 REMARK 500 3 VAL B 377 75.02 -157.07 REMARK 500 3 VAL C 377 58.33 -172.80 REMARK 500 4 HIS A 402 97.10 53.29 REMARK 500 4 LYS B 401 103.73 55.95 REMARK 500 4 LEU C 376 145.18 58.81 REMARK 500 4 ALA C 380 -19.88 -41.94 REMARK 500 5 VAL A 377 74.65 59.08 REMARK 500 5 HIS A 402 79.58 52.71 REMARK 500 5 ASN B 374 11.47 -154.43 REMARK 500 5 VAL B 377 69.05 29.97 REMARK 500 5 HIS B 402 79.15 45.63 REMARK 500 5 ALA C 370 117.03 59.15 REMARK 500 5 PHE C 375 102.86 49.78 REMARK 500 6 PHE A 375 -146.18 -83.95 REMARK 500 6 VAL A 377 74.58 39.66 REMARK 500 6 LYS A 401 140.65 59.19 REMARK 500 6 VAL B 377 150.64 -45.43 REMARK 500 6 LYS B 401 32.61 35.16 REMARK 500 6 ALA C 380 -19.67 -42.11 REMARK 500 6 LYS C 401 39.82 34.88 REMARK 500 7 ALA A 370 12.93 48.79 REMARK 500 7 PHE A 375 8.68 -69.21 REMARK 500 7 LEU A 376 -15.96 70.83 REMARK 500 7 VAL A 377 72.66 45.05 REMARK 500 7 ALA A 380 -20.00 -41.07 REMARK 500 7 LYS A 401 164.25 57.87 REMARK 500 7 HIS A 402 93.02 54.47 REMARK 500 7 ALA B 380 -19.93 -40.71 REMARK 500 7 HIS B 402 93.44 48.82 REMARK 500 7 ILE C 379 -75.28 -94.64 REMARK 500 7 LYS C 401 140.85 59.49 REMARK 500 8 PHE A 375 118.08 56.99 REMARK 500 REMARK 500 THIS ENTRY HAS 121 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19941 RELATED DB: BMRB REMARK 900 RELATED ID: 2MOF RELATED DB: PDB DBREF 2MOM A 369 410 UNP P13473 LAMP2_HUMAN 369 410 DBREF 2MOM B 369 410 UNP P13473 LAMP2_HUMAN 369 410 DBREF 2MOM C 369 410 UNP P13473 LAMP2_HUMAN 369 410 SEQRES 1 A 42 SER ALA ASP ASP ASP ASN PHE LEU VAL PRO ILE ALA VAL SEQRES 2 A 42 GLY ALA ALA LEU ALA GLY VAL LEU ILE LEU VAL LEU LEU SEQRES 3 A 42 ALA TYR PHE ILE GLY LEU LYS HIS HIS HIS ALA GLY TYR SEQRES 4 A 42 GLU GLN PHE SEQRES 1 B 42 SER ALA ASP ASP ASP ASN PHE LEU VAL PRO ILE ALA VAL SEQRES 2 B 42 GLY ALA ALA LEU ALA GLY VAL LEU ILE LEU VAL LEU LEU SEQRES 3 B 42 ALA TYR PHE ILE GLY LEU LYS HIS HIS HIS ALA GLY TYR SEQRES 4 B 42 GLU GLN PHE SEQRES 1 C 42 SER ALA ASP ASP ASP ASN PHE LEU VAL PRO ILE ALA VAL SEQRES 2 C 42 GLY ALA ALA LEU ALA GLY VAL LEU ILE LEU VAL LEU LEU SEQRES 3 C 42 ALA TYR PHE ILE GLY LEU LYS HIS HIS HIS ALA GLY TYR SEQRES 4 C 42 GLU GLN PHE HELIX 1 1 ILE A 379 LYS A 401 1 23 HELIX 2 2 ILE B 379 LYS B 401 1 23 HELIX 3 3 ILE C 379 LYS C 401 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1