HEADER PROTEIN BINDING 05-MAY-14 2MOV TITLE RECEPTOR FOR ADVANCED GLYCATION END PRODUCTS (RAGE) SPECIFICALLY TITLE 2 RECOGNIZES METHYLGLYOXAL DERIVED AGES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-125; COMPND 5 SYNONYM: RECEPTOR FOR ADVANCED GLYCOSYLATION END PRODUCTS; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGER, RAGE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28-V KEYWDS PROTEIN/LIGAND, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.SHEKHTMAN,J.XUE,R.RAY,D.SINGER,D.BOHME,D.S.BURZ,V.RAI,R.HOFFMAN REVDAT 2 14-JUN-23 2MOV 1 REMARK SEQADV REVDAT 1 25-JUN-14 2MOV 0 JRNL AUTH J.XUE,R.RAY,D.SINGER,D.BOHME,D.S.BURZ,V.RAI,R.HOFFMANN, JRNL AUTH 2 A.SHEKHTMAN JRNL TITL THE RECEPTOR FOR ADVANCED GLYCATION END PRODUCTS (RAGE) JRNL TITL 2 SPECIFICALLY RECOGNIZES METHYLGLYOXAL-DERIVED AGES. JRNL REF BIOCHEMISTRY V. 53 3327 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24824951 JRNL DOI 10.1021/BI500046T REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XEASY, CYANA REMARK 3 AUTHORS : BARTELS ET AL. (XEASY), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000103873. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.1 MM [U-13C; U-15N] REMARK 210 METHYLGLYOXAL-DERIVED REMARK 210 HYDROIMIDAZOLONES ISOFORM 1, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H TOCSY; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HCACO; 3D 1H-15N REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 12 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 107.50 -179.69 REMARK 500 1 ALA A 3 71.67 51.32 REMARK 500 1 LYS A 19 102.78 -49.37 REMARK 500 1 PRO A 22 -162.96 -69.75 REMARK 500 1 LYS A 24 168.68 -45.92 REMARK 500 1 PRO A 26 97.25 -69.75 REMARK 500 1 THR A 38 -29.76 -179.31 REMARK 500 1 PRO A 46 0.48 -69.79 REMARK 500 1 GLN A 47 71.56 -118.80 REMARK 500 1 VAL A 55 -97.42 -126.27 REMARK 500 1 ALA A 68 101.35 -168.63 REMARK 500 1 TYR A 98 -79.80 -64.51 REMARK 500 2 SER A 2 96.90 58.73 REMARK 500 2 ALA A 3 72.41 51.61 REMARK 500 2 PRO A 22 -167.28 -69.74 REMARK 500 2 THR A 38 -30.55 -178.42 REMARK 500 2 PRO A 46 2.36 -69.84 REMARK 500 2 VAL A 55 -73.62 -118.82 REMARK 500 2 ALA A 68 102.01 -168.20 REMARK 500 2 TYR A 98 -79.68 -63.53 REMARK 500 3 SER A 2 97.29 -179.33 REMARK 500 3 ALA A 3 73.24 51.35 REMARK 500 3 PRO A 22 -165.62 -69.71 REMARK 500 3 THR A 38 -30.15 -179.18 REMARK 500 3 PRO A 51 3.32 -69.81 REMARK 500 3 VAL A 55 -99.08 -126.68 REMARK 500 3 ALA A 68 104.22 -166.73 REMARK 500 3 TYR A 98 -79.83 -66.41 REMARK 500 3 LYS A 103 72.72 -113.99 REMARK 500 3 PRO A 104 -177.65 -69.86 REMARK 500 4 ALA A 3 94.86 -60.49 REMARK 500 4 PRO A 22 -165.56 -69.76 REMARK 500 4 THR A 38 -33.10 -176.28 REMARK 500 4 GLU A 39 34.02 -99.09 REMARK 500 4 VAL A 55 -97.96 -126.53 REMARK 500 4 ALA A 68 104.85 -170.95 REMARK 500 4 TYR A 98 -80.76 -65.39 REMARK 500 5 SER A 2 111.03 -179.74 REMARK 500 5 ALA A 3 70.78 51.06 REMARK 500 5 PRO A 22 -165.07 -69.76 REMARK 500 5 PRO A 26 -84.78 -69.66 REMARK 500 5 THR A 38 -29.82 -179.72 REMARK 500 5 VAL A 55 -97.40 -126.16 REMARK 500 5 ALA A 68 101.17 -166.87 REMARK 500 5 TYR A 98 -82.26 -65.86 REMARK 500 6 ALA A 3 100.92 -52.46 REMARK 500 6 LYS A 19 95.77 -55.88 REMARK 500 6 PRO A 22 -163.47 -69.68 REMARK 500 6 LYS A 24 168.07 -44.86 REMARK 500 6 PRO A 26 97.26 -69.79 REMARK 500 REMARK 500 THIS ENTRY HAS 188 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1 IOR A 201 REMARK 610 2 IOR A 201 REMARK 610 3 IOR A 201 REMARK 610 4 IOR A 201 REMARK 610 5 IOR A 201 REMARK 610 6 IOR A 201 REMARK 610 7 IOR A 201 REMARK 610 8 IOR A 201 REMARK 610 9 IOR A 201 REMARK 610 10 IOR A 201 REMARK 610 11 IOR A 201 REMARK 610 12 IOR A 201 REMARK 610 13 IOR A 201 REMARK 610 14 IOR A 201 REMARK 610 15 IOR A 201 REMARK 610 16 IOR A 201 REMARK 610 17 IOR A 201 REMARK 610 18 IOR A 201 REMARK 610 19 IOR A 201 REMARK 610 20 IOR A 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOR A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19953 RELATED DB: BMRB DBREF 2MOV A 3 105 UNP Q15109 RAGE_HUMAN 23 125 SEQADV 2MOV GLY A 1 UNP Q15109 EXPRESSION TAG SEQADV 2MOV SER A 2 UNP Q15109 EXPRESSION TAG SEQRES 1 A 105 GLY SER ALA GLN ASN ILE THR ALA ARG ILE GLY GLU PRO SEQRES 2 A 105 LEU VAL LEU LYS CYS LYS GLY ALA PRO LYS LYS PRO PRO SEQRES 3 A 105 GLN ARG LEU GLU TRP LYS LEU ASN THR GLY ARG THR GLU SEQRES 4 A 105 ALA TRP LYS VAL LEU SER PRO GLN GLY GLY GLY PRO TRP SEQRES 5 A 105 ASP SER VAL ALA ARG VAL LEU PRO ASN GLY SER LEU PHE SEQRES 6 A 105 LEU PRO ALA VAL GLY ILE GLN ASP GLU GLY ILE PHE ARG SEQRES 7 A 105 CYS GLN ALA MET ASN ARG ASN GLY LYS GLU THR LYS SER SEQRES 8 A 105 ASN TYR ARG VAL ARG VAL TYR GLN ILE PRO GLY LYS PRO SEQRES 9 A 105 GLU HET IOR A 201 29 HETNAM IOR N~5~-[(5R)-5-METHYL-4-OXO-4,5-DIHYDRO-1H-IMIDAZOL-2- HETNAM 2 IOR YL]-L-ORNITHINE FORMUL 2 IOR C9 H16 N4 O3 HELIX 1 1 GLY A 50 SER A 54 5 5 HELIX 2 2 GLY A 70 ASP A 73 5 4 SHEET 1 A 5 GLN A 4 THR A 7 0 SHEET 2 A 5 GLU A 88 ARG A 96 1 O ARG A 94 N ILE A 6 SHEET 3 A 5 GLY A 75 MET A 82 -1 N CYS A 79 O SER A 91 SHEET 4 A 5 LEU A 29 THR A 35 -1 N ASN A 34 O ILE A 76 SHEET 5 A 5 LYS A 42 LEU A 44 -1 O LYS A 42 N LEU A 33 SHEET 1 B 3 GLU A 12 LEU A 16 0 SHEET 2 B 3 LEU A 64 VAL A 69 -1 O LEU A 64 N LEU A 16 SHEET 3 B 3 ARG A 57 VAL A 58 -1 N ARG A 57 O PHE A 65 SSBOND 1 CYS A 18 CYS A 79 1555 1555 2.18 SITE 1 AC1 5 ARG A 78 CYS A 79 GLN A 80 LYS A 90 SITE 2 AC1 5 ASN A 92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1