data_2MP8 # _entry.id 2MP8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MP8 pdb_00002mp8 10.2210/pdb2mp8/pdb RCSB RCSB103886 ? ? BMRB 19970 ? 10.13018/BMR19970 WWPDB D_1000103886 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-13 2 'Structure model' 1 1 2016-06-01 3 'Structure model' 1 2 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_entry_details 5 3 'Structure model' pdbx_modification_feature 6 3 'Structure model' pdbx_nmr_software 7 3 'Structure model' pdbx_nmr_spectrometer 8 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MP8 _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2014-05-13 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_id 19970 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rosengren, K.J.' 1 'Craik, D.J.' 2 # _citation.id primary _citation.title ;Identification, Characterization, and Three-Dimensional Structure of the Novel Circular Bacteriocin, Enterocin NKR-5-3B, from Enterococcus faecium ; _citation.journal_abbrev Biochemistry _citation.journal_volume 54 _citation.page_first 4863 _citation.page_last 4876 _citation.year 2015 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26174911 _citation.pdbx_database_id_DOI 10.1021/acs.biochem.5b00196 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Himeno, K.' 1 ? primary 'Rosengren, K.J.' 2 ? primary 'Inoue, T.' 3 ? primary 'Perez, R.H.' 4 ? primary 'Colgrave, M.L.' 5 ? primary 'Lee, H.S.' 6 ? primary 'Chan, L.Y.' 7 ? primary 'Henriques, S.T.' 8 ? primary 'Fujita, K.' 9 ? primary 'Ishibashi, N.' 10 ? primary 'Zendo, T.' 11 ? primary 'Wilaipun, P.' 12 ? primary 'Nakayama, J.' 13 ? primary 'Leelawatcharamas, V.' 14 ? primary 'Jikuya, H.' 15 ? primary 'Craik, D.J.' 16 ? primary 'Sonomoto, K.' 17 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description NKR-5-3B _entity.formula_weight 6340.495 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LTANLGISSYAAKKVIDIINTGSAVATIIALVTAVVGGGLITAGIVATAKSLIKKYGAKYAAAW _entity_poly.pdbx_seq_one_letter_code_can LTANLGISSYAAKKVIDIINTGSAVATIIALVTAVVGGGLITAGIVATAKSLIKKYGAKYAAAW _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 THR n 1 3 ALA n 1 4 ASN n 1 5 LEU n 1 6 GLY n 1 7 ILE n 1 8 SER n 1 9 SER n 1 10 TYR n 1 11 ALA n 1 12 ALA n 1 13 LYS n 1 14 LYS n 1 15 VAL n 1 16 ILE n 1 17 ASP n 1 18 ILE n 1 19 ILE n 1 20 ASN n 1 21 THR n 1 22 GLY n 1 23 SER n 1 24 ALA n 1 25 VAL n 1 26 ALA n 1 27 THR n 1 28 ILE n 1 29 ILE n 1 30 ALA n 1 31 LEU n 1 32 VAL n 1 33 THR n 1 34 ALA n 1 35 VAL n 1 36 VAL n 1 37 GLY n 1 38 GLY n 1 39 GLY n 1 40 LEU n 1 41 ILE n 1 42 THR n 1 43 ALA n 1 44 GLY n 1 45 ILE n 1 46 VAL n 1 47 ALA n 1 48 THR n 1 49 ALA n 1 50 LYS n 1 51 SER n 1 52 LEU n 1 53 ILE n 1 54 LYS n 1 55 LYS n 1 56 TYR n 1 57 GLY n 1 58 ALA n 1 59 LYS n 1 60 TYR n 1 61 ALA n 1 62 ALA n 1 63 ALA n 1 64 TRP n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Enterococcus faecalis' _entity_src_nat.pdbx_ncbi_taxonomy_id 1351 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain NKR-5-3 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 TRP 64 64 64 TRP TRP A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'NMR structure of a circular bacteriocin from Enterococcus faecium' _exptl.entry_id 2MP8 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MP8 _struct.title 'NMR structure of NKR-5-3B' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MP8 _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text 'bacteriocin, antimicrobial peptide, head-to-tail cyclic, helix bundle, ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2MP8 _struct_ref.pdbx_db_accession 2MP8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MP8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 64 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2MP8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 64 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 64 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 1 ? GLY A 6 ? LEU A 1 GLY A 6 1 ? 6 HELX_P HELX_P2 2 SER A 8 ? GLY A 22 ? SER A 8 GLY A 22 1 ? 15 HELX_P HELX_P3 3 ALA A 24 ? GLY A 37 ? ALA A 24 GLY A 37 1 ? 14 HELX_P HELX_P4 4 THR A 42 ? TYR A 56 ? THR A 42 TYR A 56 1 ? 15 HELX_P HELX_P5 5 GLY A 57 ? TRP A 64 ? GLY A 57 TRP A 64 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LEU _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id N _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id TRP _struct_conn.ptnr2_label_seq_id 64 _struct_conn.ptnr2_label_atom_id C _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LEU _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id TRP _struct_conn.ptnr2_auth_seq_id 64 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.324 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id LEU _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 1 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id TRP _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 64 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id LEU _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 1 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id TRP _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 64 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom N _pdbx_modification_feature.modified_residue_id_linking_atom C _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Non-standard linkage' # _pdbx_entry_details.entry_id 2MP8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 23 ? ? -102.45 -71.62 2 2 SER A 23 ? ? -103.88 -71.45 3 3 SER A 23 ? ? -93.56 -88.72 4 4 SER A 23 ? ? -102.93 -71.74 5 5 SER A 23 ? ? -99.13 -86.34 6 6 SER A 23 ? ? -109.55 -77.17 7 6 LEU A 40 ? ? -68.56 -70.17 8 7 SER A 23 ? ? -94.12 -76.17 9 8 SER A 23 ? ? -93.65 -73.18 10 8 LEU A 40 ? ? -88.57 -71.00 11 9 SER A 23 ? ? -101.91 -71.95 12 9 LEU A 40 ? ? -90.66 -75.56 13 10 SER A 23 ? ? -97.88 -74.31 14 10 LEU A 40 ? ? -96.77 -80.09 15 11 SER A 23 ? ? -93.53 -74.78 16 12 SER A 23 ? ? -95.11 -74.19 17 13 SER A 23 ? ? -97.07 -73.38 18 13 LEU A 40 ? ? -89.07 -78.30 19 14 SER A 23 ? ? -99.01 -76.83 20 14 LEU A 40 ? ? -86.85 -70.05 21 15 SER A 23 ? ? -102.98 -78.28 22 15 LEU A 40 ? ? -85.62 -82.77 23 16 SER A 23 ? ? -111.76 -76.35 24 16 LEU A 40 ? ? -85.19 -72.54 25 17 SER A 23 ? ? -99.55 -85.84 26 18 SER A 23 ? ? -96.09 -69.92 27 18 LEU A 40 ? ? -102.46 -80.07 28 19 SER A 23 ? ? -100.67 -74.55 29 19 LEU A 40 ? ? -94.67 -74.50 30 20 SER A 23 ? ? -105.17 -75.72 31 20 LEU A 40 ? ? -92.46 -75.60 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MP8 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 2.3 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.176 _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MP8 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '6 mg/mL NKR-5-3B-1, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '6 mg/mL NKR-5-3B-2, 100% D2O' 2 '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id NKR-5-3B-1 6 ? mg/mL ? 1 NKR-5-3B-2 6 ? mg/mL ? 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.pH 5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D DQF-COSY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D 1H-1H NOESY' 1 4 1 '2D 1H-15N HSQC' 1 5 2 '2D 1H-1H TOCSY' 1 6 2 '2D 1H-1H NOESY' 1 7 2 '2D 1H-13C HSQC' 1 8 1 '2D 1H-1H TOCSY' 1 9 1 '2D 1H-1H NOESY' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MP8 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 96 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1048 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 297 _pdbx_nmr_constraints.NOE_long_range_total_count 183 _pdbx_nmr_constraints.NOE_medium_range_total_count 294 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 274 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count 28 _pdbx_nmr_constraints.protein_other_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 54 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 54 # _pdbx_nmr_refine.entry_id 2MP8 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'Structures generated by torsion angel dynamics and refined in explicit water using cartesian dynamics.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Bruker Biospin' collection TopSpin 1 2.1 'Bruker Biospin' processing TopSpin 2 2.1 'Keller and Wuthrich' 'chemical shift assignment' CARA 3 ? 'Keller and Wuthrich' 'peak picking' CARA 4 ? 'Keller and Wuthrich' 'data analysis' CARA 5 ? 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 6 3.0 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 7 1.2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLY N N N N 47 GLY CA C N N 48 GLY C C N N 49 GLY O O N N 50 GLY OXT O N N 51 GLY H H N N 52 GLY H2 H N N 53 GLY HA2 H N N 54 GLY HA3 H N N 55 GLY HXT H N N 56 ILE N N N N 57 ILE CA C N S 58 ILE C C N N 59 ILE O O N N 60 ILE CB C N S 61 ILE CG1 C N N 62 ILE CG2 C N N 63 ILE CD1 C N N 64 ILE OXT O N N 65 ILE H H N N 66 ILE H2 H N N 67 ILE HA H N N 68 ILE HB H N N 69 ILE HG12 H N N 70 ILE HG13 H N N 71 ILE HG21 H N N 72 ILE HG22 H N N 73 ILE HG23 H N N 74 ILE HD11 H N N 75 ILE HD12 H N N 76 ILE HD13 H N N 77 ILE HXT H N N 78 LEU N N N N 79 LEU CA C N S 80 LEU C C N N 81 LEU O O N N 82 LEU CB C N N 83 LEU CG C N N 84 LEU CD1 C N N 85 LEU CD2 C N N 86 LEU OXT O N N 87 LEU H H N N 88 LEU H2 H N N 89 LEU HA H N N 90 LEU HB2 H N N 91 LEU HB3 H N N 92 LEU HG H N N 93 LEU HD11 H N N 94 LEU HD12 H N N 95 LEU HD13 H N N 96 LEU HD21 H N N 97 LEU HD22 H N N 98 LEU HD23 H N N 99 LEU HXT H N N 100 LYS N N N N 101 LYS CA C N S 102 LYS C C N N 103 LYS O O N N 104 LYS CB C N N 105 LYS CG C N N 106 LYS CD C N N 107 LYS CE C N N 108 LYS NZ N N N 109 LYS OXT O N N 110 LYS H H N N 111 LYS H2 H N N 112 LYS HA H N N 113 LYS HB2 H N N 114 LYS HB3 H N N 115 LYS HG2 H N N 116 LYS HG3 H N N 117 LYS HD2 H N N 118 LYS HD3 H N N 119 LYS HE2 H N N 120 LYS HE3 H N N 121 LYS HZ1 H N N 122 LYS HZ2 H N N 123 LYS HZ3 H N N 124 LYS HXT H N N 125 SER N N N N 126 SER CA C N S 127 SER C C N N 128 SER O O N N 129 SER CB C N N 130 SER OG O N N 131 SER OXT O N N 132 SER H H N N 133 SER H2 H N N 134 SER HA H N N 135 SER HB2 H N N 136 SER HB3 H N N 137 SER HG H N N 138 SER HXT H N N 139 THR N N N N 140 THR CA C N S 141 THR C C N N 142 THR O O N N 143 THR CB C N R 144 THR OG1 O N N 145 THR CG2 C N N 146 THR OXT O N N 147 THR H H N N 148 THR H2 H N N 149 THR HA H N N 150 THR HB H N N 151 THR HG1 H N N 152 THR HG21 H N N 153 THR HG22 H N N 154 THR HG23 H N N 155 THR HXT H N N 156 TRP N N N N 157 TRP CA C N S 158 TRP C C N N 159 TRP O O N N 160 TRP CB C N N 161 TRP CG C Y N 162 TRP CD1 C Y N 163 TRP CD2 C Y N 164 TRP NE1 N Y N 165 TRP CE2 C Y N 166 TRP CE3 C Y N 167 TRP CZ2 C Y N 168 TRP CZ3 C Y N 169 TRP CH2 C Y N 170 TRP OXT O N N 171 TRP H H N N 172 TRP H2 H N N 173 TRP HA H N N 174 TRP HB2 H N N 175 TRP HB3 H N N 176 TRP HD1 H N N 177 TRP HE1 H N N 178 TRP HE3 H N N 179 TRP HZ2 H N N 180 TRP HZ3 H N N 181 TRP HH2 H N N 182 TRP HXT H N N 183 TYR N N N N 184 TYR CA C N S 185 TYR C C N N 186 TYR O O N N 187 TYR CB C N N 188 TYR CG C Y N 189 TYR CD1 C Y N 190 TYR CD2 C Y N 191 TYR CE1 C Y N 192 TYR CE2 C Y N 193 TYR CZ C Y N 194 TYR OH O N N 195 TYR OXT O N N 196 TYR H H N N 197 TYR H2 H N N 198 TYR HA H N N 199 TYR HB2 H N N 200 TYR HB3 H N N 201 TYR HD1 H N N 202 TYR HD2 H N N 203 TYR HE1 H N N 204 TYR HE2 H N N 205 TYR HH H N N 206 TYR HXT H N N 207 VAL N N N N 208 VAL CA C N S 209 VAL C C N N 210 VAL O O N N 211 VAL CB C N N 212 VAL CG1 C N N 213 VAL CG2 C N N 214 VAL OXT O N N 215 VAL H H N N 216 VAL H2 H N N 217 VAL HA H N N 218 VAL HB H N N 219 VAL HG11 H N N 220 VAL HG12 H N N 221 VAL HG13 H N N 222 VAL HG21 H N N 223 VAL HG22 H N N 224 VAL HG23 H N N 225 VAL HXT H N N 226 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLY N CA sing N N 44 GLY N H sing N N 45 GLY N H2 sing N N 46 GLY CA C sing N N 47 GLY CA HA2 sing N N 48 GLY CA HA3 sing N N 49 GLY C O doub N N 50 GLY C OXT sing N N 51 GLY OXT HXT sing N N 52 ILE N CA sing N N 53 ILE N H sing N N 54 ILE N H2 sing N N 55 ILE CA C sing N N 56 ILE CA CB sing N N 57 ILE CA HA sing N N 58 ILE C O doub N N 59 ILE C OXT sing N N 60 ILE CB CG1 sing N N 61 ILE CB CG2 sing N N 62 ILE CB HB sing N N 63 ILE CG1 CD1 sing N N 64 ILE CG1 HG12 sing N N 65 ILE CG1 HG13 sing N N 66 ILE CG2 HG21 sing N N 67 ILE CG2 HG22 sing N N 68 ILE CG2 HG23 sing N N 69 ILE CD1 HD11 sing N N 70 ILE CD1 HD12 sing N N 71 ILE CD1 HD13 sing N N 72 ILE OXT HXT sing N N 73 LEU N CA sing N N 74 LEU N H sing N N 75 LEU N H2 sing N N 76 LEU CA C sing N N 77 LEU CA CB sing N N 78 LEU CA HA sing N N 79 LEU C O doub N N 80 LEU C OXT sing N N 81 LEU CB CG sing N N 82 LEU CB HB2 sing N N 83 LEU CB HB3 sing N N 84 LEU CG CD1 sing N N 85 LEU CG CD2 sing N N 86 LEU CG HG sing N N 87 LEU CD1 HD11 sing N N 88 LEU CD1 HD12 sing N N 89 LEU CD1 HD13 sing N N 90 LEU CD2 HD21 sing N N 91 LEU CD2 HD22 sing N N 92 LEU CD2 HD23 sing N N 93 LEU OXT HXT sing N N 94 LYS N CA sing N N 95 LYS N H sing N N 96 LYS N H2 sing N N 97 LYS CA C sing N N 98 LYS CA CB sing N N 99 LYS CA HA sing N N 100 LYS C O doub N N 101 LYS C OXT sing N N 102 LYS CB CG sing N N 103 LYS CB HB2 sing N N 104 LYS CB HB3 sing N N 105 LYS CG CD sing N N 106 LYS CG HG2 sing N N 107 LYS CG HG3 sing N N 108 LYS CD CE sing N N 109 LYS CD HD2 sing N N 110 LYS CD HD3 sing N N 111 LYS CE NZ sing N N 112 LYS CE HE2 sing N N 113 LYS CE HE3 sing N N 114 LYS NZ HZ1 sing N N 115 LYS NZ HZ2 sing N N 116 LYS NZ HZ3 sing N N 117 LYS OXT HXT sing N N 118 SER N CA sing N N 119 SER N H sing N N 120 SER N H2 sing N N 121 SER CA C sing N N 122 SER CA CB sing N N 123 SER CA HA sing N N 124 SER C O doub N N 125 SER C OXT sing N N 126 SER CB OG sing N N 127 SER CB HB2 sing N N 128 SER CB HB3 sing N N 129 SER OG HG sing N N 130 SER OXT HXT sing N N 131 THR N CA sing N N 132 THR N H sing N N 133 THR N H2 sing N N 134 THR CA C sing N N 135 THR CA CB sing N N 136 THR CA HA sing N N 137 THR C O doub N N 138 THR C OXT sing N N 139 THR CB OG1 sing N N 140 THR CB CG2 sing N N 141 THR CB HB sing N N 142 THR OG1 HG1 sing N N 143 THR CG2 HG21 sing N N 144 THR CG2 HG22 sing N N 145 THR CG2 HG23 sing N N 146 THR OXT HXT sing N N 147 TRP N CA sing N N 148 TRP N H sing N N 149 TRP N H2 sing N N 150 TRP CA C sing N N 151 TRP CA CB sing N N 152 TRP CA HA sing N N 153 TRP C O doub N N 154 TRP C OXT sing N N 155 TRP CB CG sing N N 156 TRP CB HB2 sing N N 157 TRP CB HB3 sing N N 158 TRP CG CD1 doub Y N 159 TRP CG CD2 sing Y N 160 TRP CD1 NE1 sing Y N 161 TRP CD1 HD1 sing N N 162 TRP CD2 CE2 doub Y N 163 TRP CD2 CE3 sing Y N 164 TRP NE1 CE2 sing Y N 165 TRP NE1 HE1 sing N N 166 TRP CE2 CZ2 sing Y N 167 TRP CE3 CZ3 doub Y N 168 TRP CE3 HE3 sing N N 169 TRP CZ2 CH2 doub Y N 170 TRP CZ2 HZ2 sing N N 171 TRP CZ3 CH2 sing Y N 172 TRP CZ3 HZ3 sing N N 173 TRP CH2 HH2 sing N N 174 TRP OXT HXT sing N N 175 TYR N CA sing N N 176 TYR N H sing N N 177 TYR N H2 sing N N 178 TYR CA C sing N N 179 TYR CA CB sing N N 180 TYR CA HA sing N N 181 TYR C O doub N N 182 TYR C OXT sing N N 183 TYR CB CG sing N N 184 TYR CB HB2 sing N N 185 TYR CB HB3 sing N N 186 TYR CG CD1 doub Y N 187 TYR CG CD2 sing Y N 188 TYR CD1 CE1 sing Y N 189 TYR CD1 HD1 sing N N 190 TYR CD2 CE2 doub Y N 191 TYR CD2 HD2 sing N N 192 TYR CE1 CZ doub Y N 193 TYR CE1 HE1 sing N N 194 TYR CE2 CZ sing Y N 195 TYR CE2 HE2 sing N N 196 TYR CZ OH sing N N 197 TYR OH HH sing N N 198 TYR OXT HXT sing N N 199 VAL N CA sing N N 200 VAL N H sing N N 201 VAL N H2 sing N N 202 VAL CA C sing N N 203 VAL CA CB sing N N 204 VAL CA HA sing N N 205 VAL C O doub N N 206 VAL C OXT sing N N 207 VAL CB CG1 sing N N 208 VAL CB CG2 sing N N 209 VAL CB HB sing N N 210 VAL CG1 HG11 sing N N 211 VAL CG1 HG12 sing N N 212 VAL CG1 HG13 sing N N 213 VAL CG2 HG21 sing N N 214 VAL CG2 HG22 sing N N 215 VAL CG2 HG23 sing N N 216 VAL OXT HXT sing N N 217 # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Bruker 'AVANCE II' 1 'Bruker Avance II' 600 Bruker AVANCE 2 'Bruker Avance' # _atom_sites.entry_id 2MP8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ #