HEADER SIGNALING PROTEIN 15-MAY-14 2MPC TITLE SOLUTION STRUCTURE OF THE PYRIN DOMAIN OF HUMAN PYRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DAPIN DOMAIN (PYD), RESIDUES 1-92; COMPND 5 SYNONYM: MARENOSTRIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MEFV, MEF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-28B KEYWDS PYRIN DOMAIN, DEATH DOMAIN, INFLAMMATION, CS-ROSETTA, SIGNALING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.L.SOH,S.J.SMITH,J.M.HILL REVDAT 3 15-MAY-24 2MPC 1 REMARK REVDAT 2 24-AUG-22 2MPC 1 JRNL REMARK SEQADV REVDAT 1 16-JUL-14 2MPC 0 JRNL AUTH P.R.VAJJHALA,S.KAISER,S.J.SMITH,Q.R.ONG,S.L.SOH,K.J.STACEY, JRNL AUTH 2 J.M.HILL JRNL TITL IDENTIFICATION OF MULTIFACETED BINDING MODES FOR PYRIN AND JRNL TITL 2 ASC PYRIN DOMAINS GIVES INSIGHTS INTO PYRIN INFLAMMASOME JRNL TITL 3 ASSEMBLY. JRNL REF J.BIOL.CHEM. V. 289 23504 2014 JRNL REFN ESSN 1083-351X JRNL PMID 25006247 JRNL DOI 10.1074/JBC.M114.553305 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CS-ROSETTA 3.4 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), YANG SHEN, OLIVER LANGE, REMARK 3 FRANK DELAGLIO, ET AL. (CS-ROSETTA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000103889. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 PYRIN-1, 90 % H2O-2, 10 % D2O-3, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D C(CO)NH; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 5000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 79 70.60 -107.44 REMARK 500 2 ASN A 78 60.73 60.24 REMARK 500 3 GLN A 79 71.85 -110.91 REMARK 500 5 ASN A 78 47.98 72.60 REMARK 500 8 GLN A 79 77.16 -114.40 REMARK 500 9 GLN A 79 78.24 -110.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19875 RELATED DB: BMRB DBREF 2MPC A 1 92 UNP O15553 MEFV_HUMAN 1 92 SEQADV 2MPC LEU A 93 UNP O15553 EXPRESSION TAG SEQADV 2MPC GLU A 94 UNP O15553 EXPRESSION TAG SEQADV 2MPC HIS A 95 UNP O15553 EXPRESSION TAG SEQADV 2MPC HIS A 96 UNP O15553 EXPRESSION TAG SEQADV 2MPC HIS A 97 UNP O15553 EXPRESSION TAG SEQADV 2MPC HIS A 98 UNP O15553 EXPRESSION TAG SEQADV 2MPC HIS A 99 UNP O15553 EXPRESSION TAG SEQADV 2MPC HIS A 100 UNP O15553 EXPRESSION TAG SEQRES 1 A 100 MET ALA LYS THR PRO SER ASP HIS LEU LEU SER THR LEU SEQRES 2 A 100 GLU GLU LEU VAL PRO TYR ASP PHE GLU LYS PHE LYS PHE SEQRES 3 A 100 LYS LEU GLN ASN THR SER VAL GLN LYS GLU HIS SER ARG SEQRES 4 A 100 ILE PRO ARG SER GLN ILE GLN ARG ALA ARG PRO VAL LYS SEQRES 5 A 100 MET ALA THR LEU LEU VAL THR TYR TYR GLY GLU GLU TYR SEQRES 6 A 100 ALA VAL GLN LEU THR LEU GLN VAL LEU ARG ALA ILE ASN SEQRES 7 A 100 GLN ARG LEU LEU ALA GLU GLU LEU HIS ARG ALA ALA ILE SEQRES 8 A 100 GLN LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 4 LEU A 16 1 13 HELIX 2 2 VAL A 17 GLN A 29 1 13 HELIX 3 3 PRO A 41 ALA A 48 1 8 HELIX 4 4 LYS A 52 TYR A 61 1 10 HELIX 5 5 GLY A 62 ILE A 77 1 16 HELIX 6 6 GLN A 79 LEU A 93 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1