HEADER MEMBRANE PROTEIN 29-MAY-14 2MPN TITLE 3D NMR STRUCTURE OF THE TRANSMEMBRANE DOMAIN OF THE FULL-LENGTH INNER TITLE 2 MEMBRANE PROTEIN YGAP FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: INNER MEMBRANE PROTEIN YGAP; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B2668, JW2643, YGAP, YGAP B2668 JW2643; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET3A-LIC KEYWDS MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.EICHMANN,C.TZITZILONIS,E.BORDIGNON,I.MASLENNIKOV,S.CHOE,R.RIEK REVDAT 4 14-JUN-23 2MPN 1 REMARK SEQADV REVDAT 3 17-SEP-14 2MPN 1 JRNL REVDAT 2 13-AUG-14 2MPN 1 JRNL REVDAT 1 25-JUN-14 2MPN 0 JRNL AUTH C.EICHMANN,C.TZITZILONIS,E.BORDIGNON,I.MASLENNIKOV,S.CHOE, JRNL AUTH 2 R.RIEK JRNL TITL SOLUTION NMR STRUCTURE AND FUNCTIONAL ANALYSIS OF THE JRNL TITL 2 INTEGRAL MEMBRANE PROTEIN YGAP FROM ESCHERICHIA COLI. JRNL REF J.BIOL.CHEM. V. 289 23482 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24958726 JRNL DOI 10.1074/JBC.M114.571935 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XEASY, CYANA REMARK 3 AUTHORS : BARTELS ET AL. (XEASY), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000103900. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 0; 0 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N; REMARK 210 U-80% 2H] YGAP, 95% H2O/5% D2O; REMARK 210 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 YGAP, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 111 -171.07 -69.74 REMARK 500 1 LEU A 140 -81.59 -52.68 REMARK 500 1 LEU A 141 -85.28 -122.84 REMARK 500 1 PRO A 168 48.24 -69.83 REMARK 500 1 TRP A 169 -84.65 -53.57 REMARK 500 1 ARG A 172 38.68 -142.22 REMARK 500 1 PRO B 111 -170.40 -69.71 REMARK 500 1 LEU B 140 -82.01 -51.88 REMARK 500 1 LEU B 141 -85.13 -122.56 REMARK 500 1 LYS B 166 58.05 -141.16 REMARK 500 1 PRO B 168 48.11 -69.90 REMARK 500 1 TRP B 169 -83.56 -53.22 REMARK 500 1 ARG B 172 41.68 -143.84 REMARK 500 2 LEU A 140 -80.57 -53.41 REMARK 500 2 LEU A 141 -85.37 -122.35 REMARK 500 2 LYS A 166 59.80 -155.76 REMARK 500 2 PRO A 168 53.56 -69.80 REMARK 500 2 TRP A 169 -83.11 -47.27 REMARK 500 2 LEU B 140 -80.85 -52.83 REMARK 500 2 LEU B 141 -85.21 -122.40 REMARK 500 2 LYS B 166 60.37 -153.42 REMARK 500 2 PRO B 168 53.50 -69.87 REMARK 500 2 TRP B 169 -83.44 -48.34 REMARK 500 3 PRO A 111 -173.13 -69.69 REMARK 500 3 LEU A 140 -78.84 -52.19 REMARK 500 3 LEU A 141 -84.86 -122.23 REMARK 500 3 LYS A 166 59.99 -165.18 REMARK 500 3 PRO A 168 50.97 -69.76 REMARK 500 3 TRP A 169 -86.08 -50.54 REMARK 500 3 PRO B 111 -171.78 -69.74 REMARK 500 3 LEU B 140 -79.31 -51.84 REMARK 500 3 LEU B 141 -84.71 -122.03 REMARK 500 3 LYS B 166 60.06 -165.51 REMARK 500 3 PRO B 168 51.15 -69.75 REMARK 500 3 TRP B 169 -85.96 -50.89 REMARK 500 4 PRO A 111 -170.39 -69.79 REMARK 500 4 LEU A 140 -79.70 -52.65 REMARK 500 4 LEU A 141 -85.52 -122.18 REMARK 500 4 LYS A 166 57.58 -142.79 REMARK 500 4 PRO A 168 48.41 -69.66 REMARK 500 4 TRP A 169 -79.27 -49.09 REMARK 500 4 PRO B 111 -169.17 -69.92 REMARK 500 4 LEU B 140 -79.85 -51.67 REMARK 500 4 LEU B 141 -85.56 -122.40 REMARK 500 4 PRO B 168 48.44 -69.82 REMARK 500 4 TRP B 169 -79.78 -50.00 REMARK 500 5 PRO A 111 -170.24 -69.75 REMARK 500 5 LEU A 140 -80.69 -56.08 REMARK 500 5 LEU A 141 -85.55 -122.46 REMARK 500 5 LYS A 166 57.66 -144.22 REMARK 500 REMARK 500 THIS ENTRY HAS 129 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MOI RELATED DB: PDB REMARK 900 RELATED ID: 2MOL RELATED DB: PDB REMARK 900 RELATED ID: 19994 RELATED DB: BMRB DBREF 2MPN A 106 173 UNP P55734 YGAP_ECOLI 107 174 DBREF 2MPN B 106 173 UNP P55734 YGAP_ECOLI 107 174 SEQADV 2MPN SER A 158 UNP P55734 CYS 159 CONFLICT SEQADV 2MPN SER B 158 UNP P55734 CYS 159 CONFLICT SEQRES 1 A 68 LYS SER GLN PRO LEU PRO LEU MET ARG GLN VAL GLN ILE SEQRES 2 A 68 ALA ALA GLY GLY LEU ILE LEU ILE GLY VAL VAL LEU GLY SEQRES 3 A 68 TYR THR VAL ASN SER GLY PHE PHE LEU LEU SER GLY PHE SEQRES 4 A 68 VAL GLY ALA GLY LEU LEU PHE ALA GLY ILE SER GLY PHE SEQRES 5 A 68 SER GLY MET ALA ARG LEU LEU ASP LYS MET PRO TRP ASN SEQRES 6 A 68 GLN ARG ALA SEQRES 1 B 68 LYS SER GLN PRO LEU PRO LEU MET ARG GLN VAL GLN ILE SEQRES 2 B 68 ALA ALA GLY GLY LEU ILE LEU ILE GLY VAL VAL LEU GLY SEQRES 3 B 68 TYR THR VAL ASN SER GLY PHE PHE LEU LEU SER GLY PHE SEQRES 4 B 68 VAL GLY ALA GLY LEU LEU PHE ALA GLY ILE SER GLY PHE SEQRES 5 B 68 SER GLY MET ALA ARG LEU LEU ASP LYS MET PRO TRP ASN SEQRES 6 B 68 GLN ARG ALA HELIX 1 1 ARG A 114 GLY A 137 1 24 HELIX 2 2 PHE A 144 MET A 167 1 24 HELIX 3 3 TRP A 169 ALA A 173 5 5 HELIX 4 4 PRO B 111 GLY B 137 1 27 HELIX 5 5 PHE B 144 MET B 167 1 24 HELIX 6 6 TRP B 169 ALA B 173 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1