HEADER PEPTIDOGLYCAN BINDING PROTEIN 05-JUN-14 2MPW TITLE SOLUTION STRUCTURE OF THE LYSM REGION OF THE E. COLI INTIMIN TITLE 2 PERIPLASMIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTIMIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LYSM REGION (UNP RESIDUES 39-143); COMPND 5 SYNONYM: ATTACHING AND EFFACING PROTEIN, EAE PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: EAE, EAEA, E2348C_3939; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PASK-IBA KEYWDS PEPTIDOGLYCAN BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 23 MDLTYP MINIMIZED AVERAGE AUTHOR M.COLES,M.CHAUBEY,J.C.LEO,D.LINKE,M.C.SCHUETZ,F.GOETZ,I.B.AUTENRIETH REVDAT 3 14-JUN-23 2MPW 1 REMARK SEQADV REVDAT 2 14-JAN-15 2MPW 1 JRNL REVDAT 1 12-NOV-14 2MPW 0 JRNL AUTH J.C.LEO,P.OBERHETTINGER,M.CHAUBEY,M.SCHUTZ,D.KUHNER, JRNL AUTH 2 U.BERTSCHE,H.SCHWARZ,F.GOTZ,I.B.AUTENRIETH,M.COLES,D.LINKE JRNL TITL THE INTIMIN PERIPLASMIC DOMAIN MEDIATES DIMERISATION AND JRNL TITL 2 BINDING TO PEPTIDOGLYCAN. JRNL REF MOL.MICROBIOL. V. 95 80 2015 JRNL REFN ISSN 0950-382X JRNL PMID 25353290 JRNL DOI 10.1111/MMI.12840 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, X-PLOR NIH, NMR-SPIRIT 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH), IN-HOUSE (NMR- REMARK 3 SPIRIT) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000103908. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 250 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 15N] LYSM, 20 MM REMARK 210 SODIUM PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 0.5 REMARK 210 MM [U-100% 13C; U-100% 15N] LYSM, REMARK 210 20 MM SODIUM PHOSPHATE, 150 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D C(CO)NH; 3D REMARK 210 HNCANNH; 3D HCCH-TOCSY; 3D H(CCO) REMARK 210 NH; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D CNH-NOESY; 3D NNH- REMARK 210 NOESY; 3D CCH-NOESY; 2D 12C- REMARK 210 FILTERED 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING, NOESY BACK REMARK 210 -CALCULATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 95 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 23 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 TYR A 59 -42.50 -149.18 REMARK 500 3 ASP A 50 -38.80 -147.41 REMARK 500 3 PRO A 118 109.55 -57.39 REMARK 500 4 HIS A 56 -41.73 -160.05 REMARK 500 4 ASN A 61 -67.39 -160.09 REMARK 500 4 GLU A 120 -51.38 -140.81 REMARK 500 4 PRO A 125 105.74 -52.22 REMARK 500 5 ASN A 43 15.41 -160.00 REMARK 500 12 LEU A 117 79.58 -117.91 REMARK 500 13 GLN A 60 -16.49 -144.17 REMARK 500 16 GLN A 60 -32.77 -159.70 REMARK 500 16 PRO A 118 86.44 -63.04 REMARK 500 16 PRO A 131 101.35 -58.73 REMARK 500 17 PRO A 118 90.78 -66.68 REMARK 500 17 PRO A 125 86.68 -62.67 REMARK 500 17 ALA A 135 -78.43 -116.79 REMARK 500 18 ASN A 43 -19.80 -49.95 REMARK 500 18 PRO A 131 108.05 -51.64 REMARK 500 20 LEU A 53 -69.51 -154.57 REMARK 500 20 GLN A 60 -57.86 -142.98 REMARK 500 20 LEU A 124 79.22 -118.29 REMARK 500 21 GLU A 42 69.58 -156.45 REMARK 500 21 PHE A 152 -37.93 -152.85 REMARK 500 22 PHE A 45 26.58 -160.01 REMARK 500 22 GLU A 120 65.86 -160.05 REMARK 500 23 PRO A 113 46.52 -94.22 REMARK 500 23 PRO A 118 42.59 -83.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25002 RELATED DB: BMRB DBREF 2MPW A 39 143 UNP P19809 EAE_ECO27 39 143 SEQADV 2MPW MET A 39 UNP P19809 ALA 39 ENGINEERED MUTATION SEQADV 2MPW GLY A 144 UNP P19809 EXPRESSION TAG SEQADV 2MPW SER A 145 UNP P19809 EXPRESSION TAG SEQADV 2MPW GLY A 146 UNP P19809 EXPRESSION TAG SEQADV 2MPW SER A 147 UNP P19809 EXPRESSION TAG SEQADV 2MPW GLU A 148 UNP P19809 EXPRESSION TAG SEQADV 2MPW ASN A 149 UNP P19809 EXPRESSION TAG SEQADV 2MPW LEU A 150 UNP P19809 EXPRESSION TAG SEQADV 2MPW TYR A 151 UNP P19809 EXPRESSION TAG SEQADV 2MPW PHE A 152 UNP P19809 EXPRESSION TAG SEQADV 2MPW GLN A 153 UNP P19809 EXPRESSION TAG SEQRES 1 A 115 MET ASN GLY GLU ASN TYR PHE LYS LEU GLY SER ASP SER SEQRES 2 A 115 LYS LEU LEU THR HIS ASN SER TYR GLN ASN ARG LEU PHE SEQRES 3 A 115 TYR THR LEU LYS THR GLY GLU THR VAL ALA ASP LEU SER SEQRES 4 A 115 LYS SER GLN ASP ILE ASN LEU SER THR ILE TRP SER LEU SEQRES 5 A 115 ASN LYS HIS LEU TYR SER SER GLU SER GLU MET MET LYS SEQRES 6 A 115 ALA ALA PRO GLY GLN GLN ILE ILE LEU PRO LEU LYS LYS SEQRES 7 A 115 LEU PRO PHE GLU TYR SER ALA LEU PRO LEU LEU GLY SER SEQRES 8 A 115 ALA PRO LEU VAL ALA ALA GLY GLY VAL ALA GLY HIS THR SEQRES 9 A 115 ASN GLY SER GLY SER GLU ASN LEU TYR PHE GLN HELIX 1 1 ASN A 40 TYR A 44 5 5 HELIX 2 2 LEU A 53 ASN A 61 1 9 HELIX 3 3 THR A 72 ASP A 81 1 10 HELIX 4 4 ASN A 83 LYS A 92 1 10 HELIX 5 5 SER A 97 LYS A 103 1 7 HELIX 6 6 GLY A 144 GLU A 148 5 5 SHEET 1 A 2 ARG A 62 THR A 66 0 SHEET 2 A 2 GLN A 109 PRO A 113 -1 O ILE A 110 N TYR A 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1