HEADER LIGASE 11-JUN-14 2MQ1 TITLE PHOSPHOTYROSINE BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE HAKAI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 106-194; COMPND 5 SYNONYM: CASITAS B-LINEAGE LYMPHOMA-TRANSFORMING SEQUENCE-LIKE COMPND 6 PROTEIN 1, E-CADHERIN BINDING PROTEIN E7, C-CBL-LIKE PROTEIN 1; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CBLL1, HAKAI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX6P-1 KEYWDS PHOSPHOTYROSINE BINDING, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR M.MUKHERJEE,F.JING-SONG,J.SIVARAMAN REVDAT 3 14-JUN-23 2MQ1 1 REMARK LINK REVDAT 2 18-DEC-19 2MQ1 1 JRNL REMARK REVDAT 1 06-AUG-14 2MQ1 0 JRNL AUTH M.MUKHERJEE,F.JING-SONG,S.RAMACHANDRAN,G.R.GUY,J.SIVARAMAN JRNL TITL DIMERIC SWITCH OF HAKAI-TRUNCATED MONOMERS DURING SUBSTRATE JRNL TITL 2 RECOGNITION: INSIGHTS FROM SOLUTION STUDIES AND NMR JRNL TITL 3 STRUCTURE. JRNL REF J.BIOL.CHEM. V. 289 25611 2014 JRNL REFN ESSN 1083-351X JRNL PMID 25074933 JRNL DOI 10.1074/JBC.M114.592840 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000103913. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM [U-100% 13C; U-100% 15N; U REMARK 210 -80% 2H] POTASSIUM PHOSPHATE-1, REMARK 210 5 MM DTT-2, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D HBHA(CO)NH; REMARK 210 3D 1H-15N NOESY; 3D HN(COCA)CB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 78 HD21 ASN A 82 1.29 REMARK 500 O HIS A 2 H ILE A 11 1.57 REMARK 500 H CYS A 4 O LEU A 9 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 2 -66.07 -96.90 REMARK 500 1 PHE A 24 -165.23 -164.53 REMARK 500 1 TYR A 26 -16.38 -47.67 REMARK 500 1 LYS A 38 36.32 -172.67 REMARK 500 1 PRO A 46 73.79 -57.73 REMARK 500 1 VAL A 47 99.87 -47.16 REMARK 500 1 ARG A 55 26.10 -75.50 REMARK 500 1 ILE A 63 -61.26 -101.14 REMARK 500 1 GLN A 65 -159.96 49.38 REMARK 500 1 ALA A 88 -63.91 73.97 REMARK 500 2 TYR A 26 -11.57 -49.43 REMARK 500 2 SER A 44 57.45 76.90 REMARK 500 2 ASP A 45 -48.19 174.82 REMARK 500 2 GLN A 48 -65.55 -98.27 REMARK 500 2 VAL A 64 92.00 50.72 REMARK 500 2 LYS A 68 34.36 -154.41 REMARK 500 2 ARG A 69 74.96 -67.06 REMARK 500 2 THR A 70 173.49 -48.19 REMARK 500 2 ALA A 88 150.81 -47.24 REMARK 500 3 HIS A 2 -58.06 65.07 REMARK 500 3 LYS A 38 33.60 -71.72 REMARK 500 3 CYS A 40 102.91 -38.72 REMARK 500 3 SER A 44 63.02 75.59 REMARK 500 3 PRO A 46 90.28 -53.88 REMARK 500 3 VAL A 47 94.77 -60.49 REMARK 500 3 ILE A 63 93.93 -45.00 REMARK 500 3 VAL A 64 -120.73 -63.53 REMARK 500 3 CYS A 67 -111.56 -146.60 REMARK 500 3 THR A 70 170.01 -56.18 REMARK 500 3 HIS A 85 -25.17 -153.15 REMARK 500 4 HIS A 2 -88.44 -173.93 REMARK 500 4 PHE A 3 106.05 -160.54 REMARK 500 4 PHE A 24 -149.94 -154.23 REMARK 500 4 TYR A 26 -13.48 -48.34 REMARK 500 4 LYS A 35 -79.23 -81.94 REMARK 500 4 LYS A 38 32.88 -71.96 REMARK 500 4 CYS A 40 74.49 -102.74 REMARK 500 4 PRO A 41 -21.79 -35.30 REMARK 500 4 SER A 44 78.37 83.99 REMARK 500 4 PRO A 46 81.48 -61.22 REMARK 500 4 VAL A 47 101.49 -48.49 REMARK 500 4 VAL A 64 76.34 47.11 REMARK 500 4 GLN A 65 -13.28 -49.02 REMARK 500 4 LYS A 68 11.29 48.82 REMARK 500 4 GLN A 74 -18.01 -46.24 REMARK 500 5 HIS A 2 51.68 -144.28 REMARK 500 5 LYS A 12 -32.71 70.00 REMARK 500 5 TYR A 26 -10.92 -49.67 REMARK 500 5 LYS A 35 -79.27 -82.25 REMARK 500 5 LYS A 38 31.86 -73.12 REMARK 500 REMARK 500 THIS ENTRY HAS 216 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 CYS A 7 SG 96.1 REMARK 620 3 CYS A 25 SG 77.7 87.8 REMARK 620 4 CYS A 28 SG 156.3 91.7 80.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 HIS A 22 ND1 77.7 REMARK 620 3 CYS A 40 SG 128.9 153.3 REMARK 620 4 CYS A 43 SG 108.8 77.5 88.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 SG REMARK 620 2 CYS A 67 SG 118.0 REMARK 620 3 HIS A 80 NE2 131.5 77.7 REMARK 620 4 HIS A 85 NE2 144.2 87.3 75.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25008 RELATED DB: BMRB DBREF 2MQ1 A 1 89 UNP Q9JIY2 HAKAI_MOUSE 106 194 SEQRES 1 A 89 VAL HIS PHE CYS ASP LYS CYS GLY LEU PRO ILE LYS VAL SEQRES 2 A 89 TYR GLY ARG MET ILE PRO CYS LYS HIS VAL PHE CYS TYR SEQRES 3 A 89 ASP CYS ALA ILE LEU HIS GLU LYS LYS GLY ASP LYS MET SEQRES 4 A 89 CYS PRO GLY CYS SER ASP PRO VAL GLN ARG ILE GLU GLN SEQRES 5 A 89 CYS THR ARG GLY SER LEU PHE MET CYS SER ILE VAL GLN SEQRES 6 A 89 GLY CYS LYS ARG THR TYR LEU SER GLN ARG ASP LEU GLN SEQRES 7 A 89 ALA HIS ILE ASN HIS ARG HIS MET ARG ALA GLY HET ZN A 101 1 HET ZN A 102 1 HET ZN A 103 1 HETNAM ZN ZINC ION FORMUL 2 ZN 3(ZN 2+) HELIX 1 1 TYR A 26 GLY A 36 1 11 HELIX 2 2 SER A 73 HIS A 85 1 13 SHEET 1 A 3 HIS A 22 CYS A 25 0 SHEET 2 A 3 TYR A 14 ILE A 18 -1 N GLY A 15 O PHE A 24 SHEET 3 A 3 ARG A 49 CYS A 53 -1 O GLU A 51 N ARG A 16 LINK SG CYS A 4 ZN ZN A 101 1555 1555 2.51 LINK SG CYS A 7 ZN ZN A 101 1555 1555 2.34 LINK SG CYS A 20 ZN ZN A 102 1555 1555 2.39 LINK ND1 HIS A 22 ZN ZN A 102 1555 1555 2.07 LINK SG CYS A 25 ZN ZN A 101 1555 1555 2.27 LINK SG CYS A 28 ZN ZN A 101 1555 1555 2.40 LINK SG CYS A 40 ZN ZN A 102 1555 1555 2.40 LINK SG CYS A 43 ZN ZN A 102 1555 1555 2.31 LINK SG CYS A 61 ZN ZN A 103 1555 1555 2.35 LINK SG CYS A 67 ZN ZN A 103 1555 1555 2.39 LINK NE2 HIS A 80 ZN ZN A 103 1555 1555 1.98 LINK NE2 HIS A 85 ZN ZN A 103 1555 1555 2.05 CISPEP 1 ILE A 18 PRO A 19 1 -0.23 CISPEP 2 ILE A 18 PRO A 19 2 -0.27 CISPEP 3 ILE A 18 PRO A 19 3 -0.15 CISPEP 4 ILE A 18 PRO A 19 4 0.02 CISPEP 5 ILE A 18 PRO A 19 5 0.03 CISPEP 6 ILE A 18 PRO A 19 6 -0.06 CISPEP 7 ILE A 18 PRO A 19 7 -0.39 CISPEP 8 ILE A 18 PRO A 19 8 0.27 CISPEP 9 ILE A 18 PRO A 19 9 -0.65 CISPEP 10 ILE A 18 PRO A 19 10 0.04 CISPEP 11 ILE A 18 PRO A 19 11 -0.01 CISPEP 12 ILE A 18 PRO A 19 12 -0.31 CISPEP 13 ILE A 18 PRO A 19 13 0.74 CISPEP 14 ILE A 18 PRO A 19 14 -0.09 CISPEP 15 ILE A 18 PRO A 19 15 -0.14 CISPEP 16 ILE A 18 PRO A 19 16 -0.14 CISPEP 17 ILE A 18 PRO A 19 17 -0.30 CISPEP 18 ILE A 18 PRO A 19 18 0.15 CISPEP 19 ILE A 18 PRO A 19 19 -0.25 CISPEP 20 ILE A 18 PRO A 19 20 -0.02 SITE 1 AC1 4 CYS A 4 CYS A 7 CYS A 25 CYS A 28 SITE 1 AC2 4 CYS A 20 HIS A 22 CYS A 40 CYS A 43 SITE 1 AC3 4 CYS A 61 CYS A 67 HIS A 80 HIS A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1