HEADER DE NOVO PROTEIN 12-JUN-14 2MQ8 TITLE SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN LFR1 1 WITH TITLE 2 FERREDOXIN FOLD, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TITLE 3 TARGET OR414 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGNED PROTEIN LFR1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTIFICIAL GENE; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET21_NESG KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,Y.LIN,N.KOGA,R.KOGA,R.XIAO,H.JANJUA,K.PEDERSON,T.B.ACTON, AUTHOR 2 G.KORNHABER,J.K.EVERETT,D.BAKER,G.T.MONTELIONE,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 4 14-JUN-23 2MQ8 1 REMARK REVDAT 3 18-NOV-15 2MQ8 1 JRNL REVDAT 2 23-SEP-15 2MQ8 1 JRNL REVDAT 1 20-AUG-14 2MQ8 0 JRNL AUTH Y.R.LIN,N.KOGA,R.TATSUMI-KOGA,G.LIU,A.F.CLOUSER, JRNL AUTH 2 G.T.MONTELIONE,D.BAKER JRNL TITL CONTROL OVER OVERALL SHAPE AND SIZE IN DE NOVO DESIGNED JRNL TITL 2 PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 E5478 2015 JRNL REFN ISSN 0027-8424 JRNL PMID 26396255 JRNL DOI 10.1073/PNAS.1509508112 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000103920. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.885 MM OR414.005, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY; REMARK 210 3D CCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 XEASY, TOPSPIN, VNMRJ, SPARKY, REMARK 210 TALOS+, REDCAT, PSVS REMARK 210 METHOD USED : DISTANCE GEOMETRY, MOLECULAR REMARK 210 DYNAMICS, SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 50 88.51 -59.61 REMARK 500 1 ALA A 89 99.42 -62.44 REMARK 500 1 VAL A 99 102.37 -55.84 REMARK 500 1 HIS A 109 82.55 -152.72 REMARK 500 2 ASP A 50 -74.57 66.39 REMARK 500 3 ASP A 49 32.42 -99.41 REMARK 500 3 ASP A 50 91.67 61.55 REMARK 500 3 GLU A 106 30.77 -98.44 REMARK 500 4 ASP A 50 -70.09 67.92 REMARK 500 4 SER A 102 99.10 -165.48 REMARK 500 4 HIS A 107 90.74 -167.68 REMARK 500 5 HIS A 111 -66.27 -94.11 REMARK 500 6 ASP A 50 88.82 -57.93 REMARK 500 6 ALA A 89 81.97 -69.21 REMARK 500 6 SER A 102 84.57 -65.52 REMARK 500 6 HIS A 107 92.58 -168.90 REMARK 500 6 HIS A 108 68.23 -158.45 REMARK 500 6 HIS A 110 78.59 -157.08 REMARK 500 7 HIS A 109 78.71 -104.69 REMARK 500 8 ASN A 39 73.16 -112.34 REMARK 500 8 ASP A 49 41.72 -95.96 REMARK 500 8 ASP A 50 77.92 62.26 REMARK 500 9 ASP A 50 -74.25 67.72 REMARK 500 9 ALA A 89 90.17 -65.44 REMARK 500 9 SER A 102 85.63 -151.07 REMARK 500 10 PRO A 38 48.59 -79.42 REMARK 500 10 ASN A 39 -42.07 -157.47 REMARK 500 10 ASP A 50 -65.04 71.51 REMARK 500 10 ASP A 86 90.09 -170.95 REMARK 500 10 SER A 101 96.19 -68.51 REMARK 500 10 HIS A 107 67.57 -154.69 REMARK 500 11 ASP A 50 -77.55 67.94 REMARK 500 11 ALA A 89 82.63 -63.58 REMARK 500 11 GLU A 98 47.09 -98.36 REMARK 500 11 SER A 102 45.19 -88.04 REMARK 500 11 LEU A 105 76.40 -118.03 REMARK 500 11 HIS A 108 105.50 -164.69 REMARK 500 12 ASP A 50 -31.41 73.99 REMARK 500 12 HIS A 107 39.68 -160.39 REMARK 500 12 HIS A 110 -77.96 -120.52 REMARK 500 12 HIS A 111 154.33 176.09 REMARK 500 13 TRP A 103 111.54 -163.63 REMARK 500 13 HIS A 107 32.76 -157.53 REMARK 500 14 ASP A 49 92.99 -166.10 REMARK 500 14 ASP A 50 74.47 56.62 REMARK 500 15 ASP A 50 -76.71 64.24 REMARK 500 15 HIS A 111 -73.50 -88.30 REMARK 500 16 ASP A 50 71.48 55.83 REMARK 500 16 ASP A 86 90.20 -166.64 REMARK 500 16 HIS A 111 114.52 -178.55 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25018 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-OR414 RELATED DB: TARGETTRACK DBREF 2MQ8 A 1 112 PDB 2MQ8 2MQ8 1 112 SEQRES 1 A 112 MET LEU THR VAL GLU VAL GLU VAL LYS ILE THR ALA ASP SEQRES 2 A 112 ASP GLU ASN LYS ALA GLU GLU ILE VAL LYS ARG VAL ILE SEQRES 3 A 112 ASP GLU VAL GLU ARG GLU VAL GLN LYS GLN TYR PRO ASN SEQRES 4 A 112 ALA THR ILE THR ARG THR LEU THR ARG ASP ASP GLY THR SEQRES 5 A 112 VAL GLU LEU ARG ILE LYS VAL LYS ALA ASP THR GLU GLU SEQRES 6 A 112 LYS ALA LYS SER ILE ILE LYS LEU ILE GLU GLU ARG ILE SEQRES 7 A 112 GLU GLU GLU LEU ARG LYS ARG ASP PRO ASN ALA THR ILE SEQRES 8 A 112 THR ARG THR VAL ARG THR GLU VAL GLY SER SER TRP SER SEQRES 9 A 112 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 14 TYR A 37 1 24 HELIX 2 2 THR A 63 LYS A 84 1 22 SHEET 1 A 4 THR A 41 ASP A 49 0 SHEET 2 A 4 THR A 52 ALA A 61 -1 O GLU A 54 N THR A 47 SHEET 3 A 4 LEU A 2 THR A 11 -1 N ILE A 10 O VAL A 53 SHEET 4 A 4 THR A 90 VAL A 95 -1 O THR A 94 N GLU A 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1