HEADER HYDROLASE 18-JUN-14 2MQB TITLE NMR STRUCTURE OF PUTATIVE BETA-LACTAMASE (NP_372339.1) FROM TITLE 2 STAPHYLOCOCCUS AUREUS MU50 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 43-193; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: MU50 / ATCC 700699; SOURCE 5 GENE: SAV1815; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: SPEEDET KEYWDS HUMAN GUT MICROBIOME SECRETED PROTEIN, HYDROLASE, STRUCTURAL KEYWDS 2 GENOMICS, PSI-BIOLOGY, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH,JOINT CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (JCSG) REVDAT 3 14-JUN-23 2MQB 1 REMARK REVDAT 2 01-FEB-23 2MQB 1 REMARK SEQADV REVDAT 1 03-SEP-14 2MQB 0 JRNL AUTH S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH JRNL TITL NMR STRUCTURE OF PUTATIVE BETA-LACTAMASE (NP_372339.1) FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS MU50 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, OPAL REMARK 3 AUTHORS : GUNTERT P. (CYANA), LUGINBUHL, GUNTERT, BILLETER REMARK 3 AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000103923. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.0798 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-98% 15N] REMARK 210 PROTEIN, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 5 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : APSY 4D-HACANH; APSY 5D REMARK 210 -HACACONH; APSY 5D-CBCACONH; 2D REMARK 210 1H-15N HSQC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 80 HG1 THR A 83 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 3 46.49 -68.35 REMARK 500 1 ASN A 52 -173.74 71.25 REMARK 500 1 ASP A 55 94.93 -172.38 REMARK 500 1 PHE A 56 18.52 -143.11 REMARK 500 1 SER A 58 58.68 -114.95 REMARK 500 1 SER A 64 -30.55 -148.13 REMARK 500 1 SER A 86 44.96 -79.04 REMARK 500 1 LYS A 92 -74.47 -57.58 REMARK 500 1 LYS A 117 60.49 -110.88 REMARK 500 1 SER A 118 -60.17 -126.29 REMARK 500 1 ASN A 120 66.78 64.74 REMARK 500 1 VAL A 129 106.84 -58.76 REMARK 500 1 ASP A 147 72.30 -150.78 REMARK 500 1 LYS A 148 118.56 174.67 REMARK 500 2 GLU A 3 99.60 -68.42 REMARK 500 2 ASN A 22 59.06 -91.38 REMARK 500 2 ALA A 48 168.28 174.73 REMARK 500 2 ASN A 52 -154.30 62.64 REMARK 500 2 PHE A 56 20.24 -148.65 REMARK 500 2 SER A 64 -65.90 -141.43 REMARK 500 2 GLU A 68 170.30 -58.01 REMARK 500 2 LYS A 117 21.70 -152.16 REMARK 500 2 ARG A 144 1.23 -67.22 REMARK 500 3 ASN A 22 25.62 -78.96 REMARK 500 3 THR A 40 -4.32 -57.79 REMARK 500 3 ALA A 48 155.32 174.50 REMARK 500 3 ASN A 52 -154.96 70.02 REMARK 500 3 ASP A 55 97.75 -173.41 REMARK 500 3 PHE A 56 10.07 -146.55 REMARK 500 3 ASN A 62 22.46 -78.61 REMARK 500 3 SER A 64 -17.92 -147.78 REMARK 500 3 GLU A 68 173.04 -59.07 REMARK 500 3 ASN A 82 49.20 -98.22 REMARK 500 3 SER A 86 43.47 -80.21 REMARK 500 3 LEU A 98 -35.77 -130.61 REMARK 500 3 GLU A 100 -78.44 -44.65 REMARK 500 3 ASP A 119 48.20 -152.99 REMARK 500 3 ASP A 132 -164.94 -105.75 REMARK 500 3 LEU A 133 68.60 -110.14 REMARK 500 3 ASP A 147 -7.32 -148.26 REMARK 500 4 GLU A 2 101.63 -59.34 REMARK 500 4 ASN A 22 22.91 -75.67 REMARK 500 4 TYR A 49 -167.63 -74.38 REMARK 500 4 ASN A 52 -157.01 75.96 REMARK 500 4 PHE A 56 33.23 -157.25 REMARK 500 4 SER A 64 -6.40 -160.46 REMARK 500 4 GLU A 68 -179.79 -61.37 REMARK 500 4 ASP A 80 28.67 -148.04 REMARK 500 4 SER A 86 12.88 -60.81 REMARK 500 4 ASP A 106 105.69 -53.27 REMARK 500 REMARK 500 THIS ENTRY HAS 223 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 149 THR A 150 2 149.29 REMARK 500 SER A 47 ALA A 48 3 148.21 REMARK 500 ASN A 53 ASP A 54 5 147.32 REMARK 500 ASP A 54 ASP A 55 6 144.07 REMARK 500 ASP A 54 ASP A 55 11 144.60 REMARK 500 GLY A 50 ASN A 51 18 148.06 REMARK 500 GLY A 136 ASN A 137 18 148.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 TYR A 36 0.08 SIDE CHAIN REMARK 500 3 ARG A 144 0.08 SIDE CHAIN REMARK 500 6 ARG A 144 0.17 SIDE CHAIN REMARK 500 7 TYR A 49 0.09 SIDE CHAIN REMARK 500 8 TYR A 49 0.07 SIDE CHAIN REMARK 500 8 ARG A 144 0.08 SIDE CHAIN REMARK 500 10 TYR A 42 0.08 SIDE CHAIN REMARK 500 14 TYR A 42 0.07 SIDE CHAIN REMARK 500 15 TYR A 49 0.10 SIDE CHAIN REMARK 500 16 TYR A 36 0.10 SIDE CHAIN REMARK 500 18 ARG A 144 0.12 SIDE CHAIN REMARK 500 19 ARG A 144 0.17 SIDE CHAIN REMARK 500 20 ARG A 144 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25026 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-417470 RELATED DB: TARGETTRACK DBREF 2MQB A 2 152 UNP Q99T58 Q99T58_STAAM 43 193 SEQADV 2MQB GLY A 1 UNP Q99T58 EXPRESSION TAG SEQRES 1 A 152 GLY GLU GLU LYS MET THR ASN GLY GLN LEU TRP LYS LYS SEQRES 2 A 152 VAL LYS ASP SER LEU ILE ASP SER ASN ILE ILE SER GLY SEQRES 3 A 152 ASN GLU ASN GLU GLU ILE THR VAL THR TYR VAL ASN LYS SEQRES 4 A 152 THR GLY TYR SER SER SER VAL SER ALA TYR GLY ASN ASN SEQRES 5 A 152 ASN ASP ASP PHE SER SER THR PRO SER ASN PHE SER LYS SEQRES 6 A 152 LEU LYS GLU ILE ASP LEU LYS LYS ASP ASN VAL PRO SER SEQRES 7 A 152 ASP ASP PHE ASN THR THR VAL SER GLY GLU ASP SER TRP SEQRES 8 A 152 LYS THR LEU THR SER LYS LEU LYS GLU LYS GLY LEU VAL SEQRES 9 A 152 THR ASP GLY GLN THR VAL THR ILE HIS CYS ASN ASP LYS SEQRES 10 A 152 SER ASP ASN THR LYS SER SER VAL SER GLY LYS VAL GLY SEQRES 11 A 152 ALA ASP LEU THR SER GLY ASN GLY THR THR PHE LYS LYS SEQRES 12 A 152 ARG PHE ILE ASP LYS ILE THR ILE ASP HELIX 1 1 THR A 6 SER A 21 1 16 HELIX 2 2 PRO A 77 PHE A 81 5 5 HELIX 3 3 GLU A 88 LYS A 99 1 12 HELIX 4 4 GLU A 100 GLY A 102 5 3 HELIX 5 5 ARG A 144 ILE A 146 5 3 SHEET 1 A 3 SER A 43 TYR A 49 0 SHEET 2 A 3 GLU A 30 ASN A 38 -1 N VAL A 34 O VAL A 46 SHEET 3 A 3 PHE A 63 LYS A 73 -1 O ASP A 70 N THR A 33 SHEET 1 B 2 THR A 84 VAL A 85 0 SHEET 2 B 2 PHE A 141 LYS A 142 -1 O PHE A 141 N VAL A 85 SHEET 1 C 3 SER A 123 SER A 126 0 SHEET 2 C 3 VAL A 110 CYS A 114 -1 N ILE A 112 O VAL A 125 SHEET 3 C 3 ILE A 149 ILE A 151 -1 O THR A 150 N THR A 111 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1