HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-JUN-14 2MQC TITLE NMR STRUCTURE OF THE PROTEIN BVU_0925 FROM BACTEROIDES VULGATUS ATCC TITLE 2 8482 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 425-526; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS ATCC 8482; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482; SOURCE 5 GENE: BVU_0925; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: SPEEDET KEYWDS HUMAN GUT MICROBIOME SECRETED PROTEIN, BACON PROTEIN FAMILY, KEYWDS 2 STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-BIOLOGY, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, JCSG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH,JOINT CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (JCSG) REVDAT 3 14-JUN-23 2MQC 1 REMARK SEQADV REVDAT 2 04-MAR-15 2MQC 1 JRNL TITLE REVDAT 1 03-SEP-14 2MQC 0 JRNL AUTH S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE PROTEIN BVU_0925 FROM BACTEROIDES JRNL TITL 2 VULGATUS ATCC 8482 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, OPAL REMARK 3 AUTHORS : GUNTERT P. (CYANA), LUGINBUHL, GUNTERT, BILLETER REMARK 3 AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000103924. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.0798 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-98% 15N] REMARK 210 PROTEIN, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 5 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : APSY 4D-HACANH; APSY 5D REMARK 210 -HACACONH; APSY 5D-CBCACONH; 2D REMARK 210 1H-15N HSQC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, OPAL, TOPSPIN 3.1, CARA, REMARK 210 J-UNIO REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 11 67.98 -150.15 REMARK 500 1 TYR A 13 -89.98 -77.99 REMARK 500 1 ALA A 14 -41.59 -164.67 REMARK 500 1 ASP A 15 74.75 -107.39 REMARK 500 1 ASP A 26 -85.89 56.31 REMARK 500 1 SER A 38 81.71 -157.08 REMARK 500 1 ASN A 44 51.55 -141.22 REMARK 500 1 SER A 54 168.36 178.49 REMARK 500 1 SER A 88 -153.23 -132.04 REMARK 500 1 LYS A 90 92.29 -68.18 REMARK 500 1 ILE A 104 45.04 -74.28 REMARK 500 2 HIS A 2 -164.37 46.43 REMARK 500 2 PHE A 11 43.87 -148.32 REMARK 500 2 TYR A 13 -176.50 -69.38 REMARK 500 2 THR A 18 45.23 -151.49 REMARK 500 2 ASP A 26 -85.25 55.19 REMARK 500 2 ASN A 44 35.97 -142.57 REMARK 500 2 SER A 64 34.85 -156.35 REMARK 500 2 ASP A 86 -84.97 -63.56 REMARK 500 2 SER A 88 -159.11 -78.40 REMARK 500 3 HIS A 2 -179.51 74.34 REMARK 500 3 PHE A 11 42.02 -168.51 REMARK 500 3 ASP A 26 -78.69 66.62 REMARK 500 3 SER A 28 -163.80 58.81 REMARK 500 3 ALA A 29 172.45 -56.11 REMARK 500 3 ASN A 44 53.05 -144.97 REMARK 500 3 ASN A 62 88.51 -152.70 REMARK 500 3 LEU A 80 72.82 -159.93 REMARK 500 3 SER A 88 -156.42 -78.96 REMARK 500 3 PRO A 99 -164.63 -69.94 REMARK 500 3 THR A 102 92.48 -160.32 REMARK 500 4 TYR A 23 54.70 -140.81 REMARK 500 4 ASP A 26 -76.18 67.26 REMARK 500 4 SER A 27 89.73 -162.13 REMARK 500 4 SER A 38 74.89 -155.88 REMARK 500 4 ASN A 44 36.12 -153.65 REMARK 500 4 SER A 54 143.77 174.59 REMARK 500 4 ASP A 86 -78.90 -61.42 REMARK 500 4 PRO A 99 -166.72 -63.79 REMARK 500 4 THR A 102 88.93 -152.30 REMARK 500 5 HIS A 2 72.20 62.57 REMARK 500 5 PHE A 11 67.49 -154.48 REMARK 500 5 SER A 12 -157.23 -155.73 REMARK 500 5 ASP A 26 -81.73 66.03 REMARK 500 5 ASP A 35 43.51 -83.18 REMARK 500 5 ASN A 44 35.04 -152.71 REMARK 500 5 SER A 64 34.94 -71.36 REMARK 500 5 LYS A 90 97.16 -61.39 REMARK 500 6 ASP A 15 31.23 -148.67 REMARK 500 6 ASP A 26 -78.34 55.13 REMARK 500 REMARK 500 THIS ENTRY HAS 205 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 15 GLY A 16 1 147.06 REMARK 500 GLY A 89 LYS A 90 2 146.55 REMARK 500 VAL A 66 SER A 67 3 147.97 REMARK 500 SER A 12 TYR A 13 6 149.68 REMARK 500 SER A 19 HIS A 20 7 148.45 REMARK 500 ASP A 26 SER A 27 12 149.28 REMARK 500 ASP A 26 SER A 27 13 148.12 REMARK 500 GLY A 89 LYS A 90 13 148.13 REMARK 500 PRO A 99 GLY A 100 13 147.97 REMARK 500 GLY A 89 LYS A 90 14 147.95 REMARK 500 SER A 88 GLY A 89 16 -149.46 REMARK 500 GLY A 1 HIS A 2 18 141.72 REMARK 500 SER A 67 TYR A 68 20 146.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 13 0.09 SIDE CHAIN REMARK 500 3 TYR A 68 0.07 SIDE CHAIN REMARK 500 5 TYR A 68 0.10 SIDE CHAIN REMARK 500 5 ARG A 76 0.10 SIDE CHAIN REMARK 500 6 TYR A 13 0.09 SIDE CHAIN REMARK 500 6 ARG A 76 0.14 SIDE CHAIN REMARK 500 7 TYR A 68 0.12 SIDE CHAIN REMARK 500 9 TYR A 13 0.11 SIDE CHAIN REMARK 500 11 TYR A 9 0.09 SIDE CHAIN REMARK 500 11 TYR A 13 0.07 SIDE CHAIN REMARK 500 14 TYR A 10 0.07 SIDE CHAIN REMARK 500 15 TYR A 23 0.07 SIDE CHAIN REMARK 500 15 ARG A 76 0.09 SIDE CHAIN REMARK 500 17 TYR A 9 0.07 SIDE CHAIN REMARK 500 19 TYR A 9 0.07 SIDE CHAIN REMARK 500 19 ARG A 76 0.08 SIDE CHAIN REMARK 500 20 ARG A 77 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25027 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-390315 RELATED DB: TARGETTRACK DBREF 2MQC A 4 105 UNP A6KYV6 A6KYV6_BACV8 425 526 SEQADV 2MQC GLY A 1 UNP A6KYV6 EXPRESSION TAG SEQADV 2MQC HIS A 2 UNP A6KYV6 EXPRESSION TAG SEQADV 2MQC MET A 3 UNP A6KYV6 EXPRESSION TAG SEQRES 1 A 105 GLY HIS MET GLY SER PRO VAL SER TYR TYR PHE SER TYR SEQRES 2 A 105 ALA ASP GLY GLY THR SER HIS THR GLU TYR PRO ASP ASP SEQRES 3 A 105 SER SER ALA GLY SER PHE ILE LEU ASP ILE THR SER TYR SEQRES 4 A 105 LYS LYS THR GLY ASN SER THR LYS ALA LEU SER TRP ASN SEQRES 5 A 105 ALA SER GLY ASP SER TRP ILE HIS VAL ASN GLY SER SER SEQRES 6 A 105 VAL SER TYR ASP GLU ASN PRO ALA LYS GLU ARG ARG THR SEQRES 7 A 105 GLY LEU VAL THR LEU LYS GLN ASP GLU SER GLY LYS THR SEQRES 8 A 105 LEU SER LEU LYS ILE VAL GLN PRO GLY LYS THR SER ILE SEQRES 9 A 105 ASP SHEET 1 A 3 SER A 8 SER A 12 0 SHEET 2 A 3 THR A 37 THR A 42 -1 O LYS A 41 N SER A 8 SHEET 3 A 3 SER A 45 ALA A 48 -1 O LYS A 47 N LYS A 40 SHEET 1 B 4 SER A 19 GLU A 22 0 SHEET 2 B 4 SER A 93 GLN A 98 1 O VAL A 97 N GLU A 22 SHEET 3 B 4 ARG A 77 GLN A 85 -1 N GLY A 79 O ILE A 96 SHEET 4 B 4 TRP A 51 GLY A 55 -1 N ASN A 52 O LYS A 84 SHEET 1 C 3 GLY A 30 PHE A 32 0 SHEET 2 C 3 VAL A 66 TYR A 68 -1 O VAL A 66 N PHE A 32 SHEET 3 C 3 ILE A 59 VAL A 61 -1 N HIS A 60 O SER A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1