HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-JUN-14 2MQD TITLE NMR STRUCTURE OF THE HYPOTHEICAL PROTEIN LREU_0056 FROM LACTOBACILLUS TITLE 2 REUTERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 45-160; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS REUTERI DSM 20016; SOURCE 3 ORGANISM_TAXID: 557436; SOURCE 4 STRAIN: DSM 20016; SOURCE 5 GENE: LREU_0056; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: SPEEDET KEYWDS HUMAN GUT MICROBIOME SECRETED PROTEIN, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 2 FUNCTION, PSI-BIOLOGY, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH,JOINT CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (JCSG) REVDAT 2 14-JUN-23 2MQD 1 REMARK SEQADV REVDAT 1 03-SEP-14 2MQD 0 JRNL AUTH S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE HYPOTHEICAL PROTEIN LREU_0056 FROM JRNL TITL 2 LACTOBACILLUS REUTERI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA, OPAL REMARK 3 AUTHORS : GUNTERT P. (CYANA), GUNTERT P. (CYANA), LUGINBUHL, REMARK 3 GUNTERT, BILLETER AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000103925. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.0798 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-98% 15N] REMARK 210 PROTEIN, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 5 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : APSY 4D-HACANH; APSY 5D REMARK 210 -HACACONH; APSY 5D-CBCACONH; 2D REMARK 210 1H-15N HSQC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : OPAL, TOPSPIN, CARA, J-UNIO REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 VAL A 91 CA - CB - CG1 ANGL. DEV. = 9.5 DEGREES REMARK 500 9 VAL A 91 CA - CB - CG2 ANGL. DEV. = 12.6 DEGREES REMARK 500 10 VAL A 91 CA - CB - CG1 ANGL. DEV. = 9.7 DEGREES REMARK 500 10 TYR A 130 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 11 VAL A 91 CA - CB - CG1 ANGL. DEV. = 9.6 DEGREES REMARK 500 12 VAL A 51 CA - CB - CG1 ANGL. DEV. = 9.6 DEGREES REMARK 500 12 TYR A 130 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 13 TYR A 118 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 20 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 20 28.36 45.00 REMARK 500 1 PHE A 23 -173.26 58.41 REMARK 500 1 SER A 37 65.49 64.83 REMARK 500 1 ASN A 48 14.54 58.78 REMARK 500 1 VAL A 55 -73.42 -51.70 REMARK 500 1 LYS A 56 166.01 56.62 REMARK 500 1 SER A 58 -56.02 -130.51 REMARK 500 1 VAL A 65 28.68 -140.52 REMARK 500 1 ASP A 67 29.14 -151.51 REMARK 500 1 LYS A 104 -179.70 -69.68 REMARK 500 1 TYR A 118 30.99 -148.39 REMARK 500 2 LYS A 22 168.61 63.12 REMARK 500 2 SER A 37 73.42 63.01 REMARK 500 2 LYS A 56 156.31 65.16 REMARK 500 2 THR A 60 35.75 -76.33 REMARK 500 2 ASP A 67 46.37 -169.70 REMARK 500 2 TYR A 118 34.85 -149.44 REMARK 500 2 THR A 136 16.97 -149.00 REMARK 500 3 HIS A 20 96.04 44.45 REMARK 500 3 PHE A 23 -168.76 52.68 REMARK 500 3 GLN A 49 -89.15 -94.96 REMARK 500 3 LEU A 50 97.28 40.90 REMARK 500 3 VAL A 55 -77.48 -49.91 REMARK 500 3 LYS A 56 165.81 57.47 REMARK 500 3 ASP A 67 26.61 -147.52 REMARK 500 3 ASP A 76 24.91 -76.58 REMARK 500 3 GLN A 89 -59.54 -131.13 REMARK 500 3 ASN A 100 50.28 -116.92 REMARK 500 3 TYR A 118 28.44 -147.84 REMARK 500 3 ARG A 125 -73.07 -71.19 REMARK 500 4 SER A 37 63.78 65.16 REMARK 500 4 VAL A 55 -71.98 -43.99 REMARK 500 4 LYS A 56 165.04 55.06 REMARK 500 4 VAL A 65 27.15 -144.14 REMARK 500 4 ASP A 67 15.40 -149.62 REMARK 500 4 GLN A 89 12.11 57.73 REMARK 500 4 LYS A 104 -174.33 -66.90 REMARK 500 4 ARG A 125 -83.51 -80.08 REMARK 500 5 MET A 21 -167.34 60.24 REMARK 500 5 VAL A 55 -77.54 -50.72 REMARK 500 5 LYS A 56 165.43 57.43 REMARK 500 5 SER A 58 -17.02 -140.29 REMARK 500 5 VAL A 65 19.06 -141.35 REMARK 500 5 ASP A 67 14.78 -142.99 REMARK 500 5 ASP A 76 38.35 -88.82 REMARK 500 5 GLN A 89 5.22 -62.71 REMARK 500 5 TYR A 118 26.59 -147.21 REMARK 500 6 LYS A 22 -179.02 59.46 REMARK 500 6 PHE A 23 -175.06 59.30 REMARK 500 6 SER A 37 73.59 58.99 REMARK 500 REMARK 500 THIS ENTRY HAS 194 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 105 LYS A 106 2 147.86 REMARK 500 VAL A 65 ASP A 66 6 -148.60 REMARK 500 ARG A 99 ASN A 100 12 -149.70 REMARK 500 LYS A 22 PHE A 23 13 148.17 REMARK 500 ASP A 59 THR A 60 13 -149.49 REMARK 500 THR A 136 GLU A 137 20 -149.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 95 0.07 SIDE CHAIN REMARK 500 1 TYR A 118 0.07 SIDE CHAIN REMARK 500 1 ARG A 121 0.11 SIDE CHAIN REMARK 500 3 ARG A 135 0.12 SIDE CHAIN REMARK 500 5 ARG A 135 0.10 SIDE CHAIN REMARK 500 6 TYR A 52 0.10 SIDE CHAIN REMARK 500 6 TYR A 68 0.07 SIDE CHAIN REMARK 500 7 ARG A 135 0.10 SIDE CHAIN REMARK 500 8 TYR A 68 0.09 SIDE CHAIN REMARK 500 10 ARG A 121 0.09 SIDE CHAIN REMARK 500 11 TYR A 68 0.08 SIDE CHAIN REMARK 500 12 TYR A 68 0.10 SIDE CHAIN REMARK 500 14 ARG A 135 0.10 SIDE CHAIN REMARK 500 15 TYR A 68 0.09 SIDE CHAIN REMARK 500 15 TYR A 118 0.12 SIDE CHAIN REMARK 500 15 ARG A 125 0.12 SIDE CHAIN REMARK 500 16 TYR A 52 0.10 SIDE CHAIN REMARK 500 16 ARG A 125 0.09 SIDE CHAIN REMARK 500 17 TYR A 118 0.10 SIDE CHAIN REMARK 500 18 TYR A 118 0.08 SIDE CHAIN REMARK 500 18 ARG A 135 0.08 SIDE CHAIN REMARK 500 20 ARG A 121 0.08 SIDE CHAIN REMARK 500 20 TYR A 130 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25028 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-420766 RELATED DB: TARGETTRACK DBREF 2MQD A 22 137 UNP A5VHK8 A5VHK8_LACRD 45 160 SEQADV 2MQD GLY A 19 UNP A5VHK8 EXPRESSION TAG SEQADV 2MQD HIS A 20 UNP A5VHK8 EXPRESSION TAG SEQADV 2MQD MET A 21 UNP A5VHK8 EXPRESSION TAG SEQRES 1 A 119 GLY HIS MET LYS PHE THR ASP GLN GLN ILE GLY VAL LEU SEQRES 2 A 119 ALA GLY LEU ALA ILE SER PRO GLU TRP LEU LYS GLN ASN SEQRES 3 A 119 ILE ALA ALA ASN GLN LEU VAL TYR GLY ILE VAL LYS PRO SEQRES 4 A 119 SER ASP THR VAL PRO ALA GLY VAL ASP ASP TYR SER TYR SEQRES 5 A 119 LEU VAL ALA ALA ASP ASP GLN ASP GLY THR ILE ILE PHE SEQRES 6 A 119 PHE LYS ALA GLU GLY GLN THR VAL ILE ILE LYS TYR THR SEQRES 7 A 119 SER GLN ARG ASN THR LYS LEU LYS ALA LYS ALA LEU THR SEQRES 8 A 119 LEU SER GLN LEU LYS LYS GLU PHE TYR GLN THR ARG SER SEQRES 9 A 119 GLN LYS ARG GLU VAL ASP ASP TYR VAL ALA GLY LEU ARG SEQRES 10 A 119 THR GLU HELIX 1 1 THR A 24 ALA A 35 1 12 HELIX 2 2 SER A 37 ALA A 47 1 11 HELIX 3 3 LEU A 110 TYR A 118 1 9 HELIX 4 4 SER A 122 VAL A 131 1 10 SHEET 1 A 5 LEU A 50 ILE A 54 0 SHEET 2 A 5 SER A 69 ALA A 73 -1 O TYR A 70 N GLY A 53 SHEET 3 A 5 ILE A 81 PHE A 84 -1 O ILE A 82 N LEU A 71 SHEET 4 A 5 THR A 90 THR A 96 -1 O LYS A 94 N PHE A 83 SHEET 5 A 5 ALA A 86 GLU A 87 -1 N GLU A 87 O THR A 90 SHEET 1 B 5 LEU A 50 ILE A 54 0 SHEET 2 B 5 SER A 69 ALA A 73 -1 O TYR A 70 N GLY A 53 SHEET 3 B 5 ILE A 81 PHE A 84 -1 O ILE A 82 N LEU A 71 SHEET 4 B 5 THR A 90 THR A 96 -1 O LYS A 94 N PHE A 83 SHEET 5 B 5 LYS A 106 THR A 109 -1 O LEU A 108 N VAL A 91 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1