HEADER MEMBRANE PROTEIN 19-JUN-14 2MQE TITLE SOLUTION STRUCTURE OF ESCHERICHIA COLI OUTER MEMBRANE PROTEIN A C- TITLE 2 TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: OMPA DOMAIN PROTEIN TRANSMEMBRANE REGION-CONTAINING COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 536056; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: OMPA, ECDH1_2686, ECDH1ME8569_0908; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PE-SUMO KEYWDS OUTER MEMBRANE PROTEIN A, OMPA, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR H.ISHIDA,H.VOGEL REVDAT 4 20-NOV-24 2MQE 1 REMARK REVDAT 3 14-JUN-23 2MQE 1 REMARK REVDAT 2 01-OCT-14 2MQE 1 JRNL REVDAT 1 03-SEP-14 2MQE 0 JRNL AUTH H.ISHIDA,A.GARCIA-HERRERO,H.J.VOGEL JRNL TITL THE PERIPLASMIC DOMAIN OF ESCHERICHIA COLI OUTER MEMBRANE JRNL TITL 2 PROTEIN A CAN UNDERGO A LOCALIZED TEMPERATURE DEPENDENT JRNL TITL 3 STRUCTURAL TRANSITION. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1838 3014 2014 JRNL REFN ISSN 0006-3002 JRNL PMID 25135663 JRNL DOI 10.1016/J.BBAMEM.2014.08.008 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0, X-PLOR NIH 2.20, CYANA 2.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000103926. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 15N] PROTEIN, 20 REMARK 210 MM SODIUM PHOSPHATE, 0.03 % REMARK 210 SODIUM AZIDE, 0.5 MM DSS, 90% REMARK 210 H2O/10% D2O; 0.5 MM [U-100% 13C; REMARK 210 U-100% 15N] PROTEIN, 20 MM REMARK 210 SODIUM PHOSPHATE, 0.03 % SODIUM REMARK 210 AZIDE, 0.5 MM DSS, 90% H2O/10% REMARK 210 D2O; 0.5 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 0.03 % SODIUM AZIDE, REMARK 210 0.5 MM DSS, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HBHA(CO)NH; 3D H(CCO)NH; 3D REMARK 210 C(CO)NH; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0, X-PLOR NIH 2.20 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 258 H ASP A 262 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 182 51.38 -171.14 REMARK 500 1 ALA A 184 74.62 178.97 REMARK 500 1 LEU A 201 -77.93 -79.77 REMARK 500 1 ASN A 203 -64.93 -107.43 REMARK 500 1 ALA A 207 -2.04 -164.07 REMARK 500 1 PRO A 211 -76.38 -34.10 REMARK 500 1 GLU A 212 -19.17 -49.72 REMARK 500 1 SER A 266 -8.51 -51.82 REMARK 500 1 ASN A 283 79.20 -167.61 REMARK 500 1 ASN A 288 -58.87 -122.74 REMARK 500 1 ASN A 292 32.41 -76.19 REMARK 500 1 ARG A 296 -70.11 -50.48 REMARK 500 1 PRO A 305 7.96 -59.14 REMARK 500 1 GLN A 324 99.25 43.48 REMARK 500 2 ALA A 182 55.84 176.32 REMARK 500 2 PRO A 187 76.60 -47.78 REMARK 500 2 LEU A 201 -79.15 -74.69 REMARK 500 2 ASN A 203 -76.65 -109.38 REMARK 500 2 ALA A 207 1.15 -164.61 REMARK 500 2 PRO A 211 -76.82 -34.32 REMARK 500 2 SER A 266 -5.58 -50.05 REMARK 500 2 SER A 275 132.96 -170.94 REMARK 500 2 ASN A 283 65.52 -154.14 REMARK 500 2 PRO A 305 9.35 -62.76 REMARK 500 3 ALA A 182 71.09 62.83 REMARK 500 3 ALA A 184 70.13 -161.12 REMARK 500 3 GLU A 188 -114.71 -171.89 REMARK 500 3 LEU A 201 -78.15 -79.94 REMARK 500 3 ASN A 203 -68.40 -102.33 REMARK 500 3 ALA A 207 -7.20 -165.92 REMARK 500 3 PRO A 211 -76.96 -34.52 REMARK 500 3 LYS A 230 -52.54 -29.79 REMARK 500 3 ASN A 288 -58.53 -123.20 REMARK 500 3 ARG A 296 -71.18 -82.90 REMARK 500 3 PRO A 305 8.55 -61.78 REMARK 500 3 LYS A 317 -147.52 -48.52 REMARK 500 4 ALA A 182 61.68 178.45 REMARK 500 4 ALA A 184 75.35 -172.59 REMARK 500 4 PRO A 185 -171.65 -51.17 REMARK 500 4 GLU A 188 160.85 56.03 REMARK 500 4 LEU A 201 -78.33 -78.90 REMARK 500 4 ASN A 203 -71.48 -111.93 REMARK 500 4 LYS A 206 -82.41 -58.94 REMARK 500 4 ALA A 207 56.55 -148.65 REMARK 500 4 PRO A 211 -76.33 -34.63 REMARK 500 4 LYS A 230 -50.06 -24.12 REMARK 500 4 SER A 266 -6.29 -50.49 REMARK 500 4 SER A 275 124.80 -170.24 REMARK 500 4 PRO A 284 107.97 -54.66 REMARK 500 4 ASN A 288 -56.02 -130.47 REMARK 500 REMARK 500 THIS ENTRY HAS 446 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25030 RELATED DB: BMRB DBREF 2MQE A 180 325 UNP C9QZB9 C9QZB9_ECOD1 201 346 SEQRES 1 A 146 ALA PRO ALA PRO ALA PRO ALA PRO GLU VAL GLN THR LYS SEQRES 2 A 146 HIS PHE THR LEU LYS SER ASP VAL LEU PHE ASN PHE ASN SEQRES 3 A 146 LYS ALA THR LEU LYS PRO GLU GLY GLN ALA ALA LEU ASP SEQRES 4 A 146 GLN LEU TYR SER GLN LEU SER ASN LEU ASP PRO LYS ASP SEQRES 5 A 146 GLY SER VAL VAL VAL LEU GLY TYR THR ASP ARG ILE GLY SEQRES 6 A 146 SER ASP ALA TYR ASN GLN GLY LEU SER GLU ARG ARG ALA SEQRES 7 A 146 GLN SER VAL VAL ASP TYR LEU ILE SER LYS GLY ILE PRO SEQRES 8 A 146 ALA ASP LYS ILE SER ALA ARG GLY MET GLY GLU SER ASN SEQRES 9 A 146 PRO VAL THR GLY ASN THR CYS ASP ASN VAL LYS GLN ARG SEQRES 10 A 146 ALA ALA LEU ILE ASP CYS LEU ALA PRO ASP ARG ARG VAL SEQRES 11 A 146 GLU ILE GLU VAL LYS GLY ILE LYS ASP VAL VAL THR GLN SEQRES 12 A 146 PRO GLN ALA HELIX 1 1 SER A 198 PHE A 202 1 5 HELIX 2 2 LYS A 210 ASN A 226 1 17 HELIX 3 3 SER A 245 SER A 266 1 22 HELIX 4 4 VAL A 285 CYS A 290 1 6 HELIX 5 5 GLN A 295 LEU A 303 1 9 SHEET 1 A 4 LYS A 192 LYS A 197 0 SHEET 2 A 4 ARG A 308 LYS A 314 -1 O VAL A 313 N LYS A 192 SHEET 3 A 4 SER A 233 TYR A 239 -1 N VAL A 235 O GLU A 312 SHEET 4 A 4 ILE A 274 GLY A 280 1 O SER A 275 N VAL A 236 SSBOND 1 CYS A 290 CYS A 302 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1