HEADER TRANSFERASE 20-JUN-14 2MQI TITLE HUMAN FYN SH2 FREE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE FYN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 149-248; COMPND 5 SYNONYM: PROTO-ONCOGENE SYN, PROTO-ONCOGENE C-FYN, SRC-LIKE KINASE, COMPND 6 SLK, P59-FYN; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FYN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS SH2 DOMAIN, FYN KINASE, SRC KINASE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.HUCULECI,L.BUTS,T.LENAERTS,N.VANNULAND REVDAT 4 14-DEC-16 2MQI 1 JRNL REVDAT 3 26-OCT-16 2MQI 1 JRNL REVDAT 2 05-OCT-16 2MQI 1 SEQRES REVDAT 1 29-JUL-15 2MQI 0 JRNL AUTH R.HUCULECI,E.CILIA,A.LYCZEK,L.BUTS,K.HOUBEN,M.A.SEELIGER, JRNL AUTH 2 N.VAN NULAND,T.LENAERTS JRNL TITL DYNAMICALLY COUPLED RESIDUES WITHIN THE SH2 DOMAIN OF FYN JRNL TITL 2 ARE KEY TO UNLOCKING ITS ACTIVITY. JRNL REF STRUCTURE V. 24 1947 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27692963 JRNL DOI 10.1016/J.STR.2016.08.016 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, TALOS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 , CORNILESCU, DELAGLIO AND BAX (TALOS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USING RECOORD FOR WATER REFINEMENT REMARK 4 REMARK 4 2MQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-14. REMARK 100 THE RCSB ID CODE IS RCSB103930. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.50 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8-1.4 MM [U-13C; U-15N] REMARK 210 FYNSH2, 50 MM SODIUM PHOSPHATE, 5 REMARK 210 MM DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 3D HCCH-TOCSY; 3D REMARK 210 H(CCO)NH; 2D 1H-1H NOESY; 2D 1H- REMARK 210 1H TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CCPNMR, CYANA, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ASN A 138 REMARK 465 LYS A 139 REMARK 465 VAL A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 MET A 147 REMARK 465 GLU A 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 14 TYR A 150 CB TYR A 150 CG -0.092 REMARK 500 17 GLY A 197 CA GLY A 197 C -0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 17 GLY A 197 N - CA - C ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 182 94.12 -66.23 REMARK 500 1 ASP A 198 79.73 63.36 REMARK 500 1 VAL A 243 -61.20 -96.82 REMARK 500 2 LYS A 153 93.74 -47.44 REMARK 500 2 ASP A 198 75.16 60.93 REMARK 500 3 PHE A 151 -64.40 -90.45 REMARK 500 3 ASP A 198 81.76 73.94 REMARK 500 3 VAL A 243 -63.70 -96.38 REMARK 500 4 ASP A 198 71.10 64.77 REMARK 500 4 VAL A 243 -63.95 -100.44 REMARK 500 5 PHE A 151 -65.60 -127.04 REMARK 500 5 ASP A 198 74.17 55.40 REMARK 500 5 VAL A 243 -63.49 -94.29 REMARK 500 6 SER A 165 -92.62 -102.85 REMARK 500 6 LYS A 182 93.43 -63.89 REMARK 500 6 ASP A 198 77.63 71.51 REMARK 500 6 ALA A 219 115.19 -160.69 REMARK 500 6 GLU A 233 -69.42 -106.67 REMARK 500 7 LYS A 182 96.33 -51.59 REMARK 500 7 ASP A 198 77.07 62.21 REMARK 500 8 ASP A 198 70.81 70.42 REMARK 500 9 TYR A 150 141.80 -38.15 REMARK 500 9 ALA A 184 -166.44 -122.69 REMARK 500 9 ASP A 198 73.63 68.30 REMARK 500 9 VAL A 243 -63.56 -102.98 REMARK 500 10 LYS A 153 95.39 -50.39 REMARK 500 10 LYS A 182 98.56 -67.89 REMARK 500 10 ASP A 198 74.82 67.60 REMARK 500 10 VAL A 243 -62.97 -100.92 REMARK 500 11 LYS A 182 101.45 -50.85 REMARK 500 11 ASP A 198 83.22 55.76 REMARK 500 12 LYS A 153 83.75 -152.84 REMARK 500 12 ALA A 184 -155.26 -116.50 REMARK 500 12 ASP A 198 77.19 66.59 REMARK 500 12 VAL A 243 -63.98 -97.56 REMARK 500 13 PHE A 151 -64.97 -125.54 REMARK 500 13 LYS A 182 102.96 -52.06 REMARK 500 13 ASP A 198 67.77 64.19 REMARK 500 13 VAL A 243 -63.07 -95.47 REMARK 500 14 TYR A 150 147.81 -36.52 REMARK 500 14 LYS A 182 93.83 -66.83 REMARK 500 14 ASP A 198 84.14 66.09 REMARK 500 14 ALA A 219 116.62 -160.18 REMARK 500 15 LYS A 182 93.66 -44.40 REMARK 500 15 ASP A 198 78.09 61.61 REMARK 500 16 TYR A 150 146.80 -38.52 REMARK 500 16 ASP A 198 84.65 53.41 REMARK 500 16 ALA A 219 149.82 -175.36 REMARK 500 16 VAL A 243 -63.13 -104.93 REMARK 500 17 ALA A 219 127.03 -171.65 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 ARG A 241 0.08 SIDE CHAIN REMARK 500 12 ARG A 156 0.07 SIDE CHAIN REMARK 500 15 ARG A 156 0.08 SIDE CHAIN REMARK 500 19 ARG A 206 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 9 TRP A 149 21.7 L L OUTSIDE RANGE REMARK 500 16 TRP A 149 21.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17368 RELATED DB: BMRB DBREF 2MQI A 148 248 UNP P06241 FYN_HUMAN 148 248 SEQADV 2MQI ASN A 138 UNP P06241 EXPRESSION TAG SEQADV 2MQI LYS A 139 UNP P06241 EXPRESSION TAG SEQADV 2MQI VAL A 140 UNP P06241 EXPRESSION TAG SEQADV 2MQI HIS A 141 UNP P06241 EXPRESSION TAG SEQADV 2MQI HIS A 142 UNP P06241 EXPRESSION TAG SEQADV 2MQI HIS A 143 UNP P06241 EXPRESSION TAG SEQADV 2MQI HIS A 144 UNP P06241 EXPRESSION TAG SEQADV 2MQI HIS A 145 UNP P06241 EXPRESSION TAG SEQADV 2MQI HIS A 146 UNP P06241 EXPRESSION TAG SEQADV 2MQI MET A 147 UNP P06241 EXPRESSION TAG SEQRES 1 A 111 ASN LYS VAL HIS HIS HIS HIS HIS HIS MET GLU TRP TYR SEQRES 2 A 111 PHE GLY LYS LEU GLY ARG LYS ASP ALA GLU ARG GLN LEU SEQRES 3 A 111 LEU SER PHE GLY ASN PRO ARG GLY THR PHE LEU ILE ARG SEQRES 4 A 111 GLU SER GLU THR THR LYS GLY ALA TYR SER LEU SER ILE SEQRES 5 A 111 ARG ASP TRP ASP ASP MET LYS GLY ASP HIS VAL LYS HIS SEQRES 6 A 111 TYR LYS ILE ARG LYS LEU ASP ASN GLY GLY TYR TYR ILE SEQRES 7 A 111 THR THR ARG ALA GLN PHE GLU THR LEU GLN GLN LEU VAL SEQRES 8 A 111 GLN HIS TYR SER GLU ARG ALA ALA GLY LEU CYS CYS ARG SEQRES 9 A 111 LEU VAL VAL PRO CYS HIS LYS HELIX 1 1 GLY A 155 LEU A 164 1 10 HELIX 2 2 THR A 223 ARG A 234 1 12 SHEET 1 A 6 ALA A 219 PHE A 221 0 SHEET 2 A 6 TYR A 213 THR A 216 -1 N TYR A 213 O PHE A 221 SHEET 3 A 6 HIS A 199 LYS A 207 -1 N ARG A 206 O TYR A 214 SHEET 4 A 6 ALA A 184 ASP A 191 -1 N ILE A 189 O LYS A 201 SHEET 5 A 6 THR A 172 SER A 178 -1 N LEU A 174 O SER A 188 SHEET 6 A 6 VAL A 244 PRO A 245 1 O VAL A 244 N PHE A 173 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1