HEADER LIGASE 22-JUN-14 2MQJ TITLE SOLUTION STRUCTURE OF UBIQUITIN-LIKE PROTEIN FROM CALDIARCHAEUM TITLE 2 SUBTERRANEUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-77; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS CALDIARCHAEUM SUBTERRANEUM; SOURCE 3 ORGANISM_TAXID: 311458; SOURCE 4 GENE: CSUB_C1474, HGMM_F04B03C03, HGMM_F21D07C21, HGMM_F30C12C33; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET-28 B (+) KEYWDS CALDIARCHAEUM SUBTERRANEUM, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.YE REVDAT 3 14-JUN-23 2MQJ 1 REMARK SEQADV REVDAT 2 27-APR-16 2MQJ 1 ATOM DBREF SEQADV SEQRES REVDAT 1 24-JUN-15 2MQJ 0 JRNL AUTH K.YE JRNL TITL SOLUTION STRUCTURE OF UBIQUITIN-LIKE PROTEIN FROM JRNL TITL 2 CALDIARCHAEUM SUBTERRANEUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, SPARKY REMARK 3 AUTHORS : GODDARD (SPARKY) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000103931. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM [U-100% 13C; U-100% 15N] REMARK 210 SODIUM PHOSPHATE-1, 1MM [U-100% REMARK 210 15N] SODIUM PHOSPHATE-2, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 8 REMARK 465 GLY A 86 REMARK 465 CYS A 87 REMARK 465 GLY A 88 REMARK 465 GLU A 89 REMARK 465 PRO A 90 REMARK 465 ILE A 91 REMARK 465 ARG A 92 REMARK 465 ARG A 93 REMARK 465 ALA A 94 REMARK 465 ALA A 95 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 17 54.32 -97.00 REMARK 500 1 ALA A 31 -77.32 -102.52 REMARK 500 1 THR A 50 65.97 -115.38 REMARK 500 1 LYS A 61 -74.65 -161.91 REMARK 500 1 GLU A 64 -79.99 65.33 REMARK 500 2 ALA A 31 -77.77 -106.29 REMARK 500 2 LYS A 61 -76.46 -163.72 REMARK 500 2 GLU A 64 -80.71 65.09 REMARK 500 2 ASP A 75 -169.86 -78.74 REMARK 500 3 ALA A 16 44.41 -93.54 REMARK 500 3 ALA A 31 -78.05 -107.62 REMARK 500 3 LYS A 61 -70.71 -163.76 REMARK 500 3 GLU A 64 -81.70 64.75 REMARK 500 3 THR A 83 34.54 -148.68 REMARK 500 4 ALA A 31 -78.06 -104.59 REMARK 500 4 THR A 50 65.33 -115.33 REMARK 500 4 LYS A 61 -76.71 -160.50 REMARK 500 4 GLU A 64 -79.30 65.98 REMARK 500 5 VAL A 17 55.42 -98.30 REMARK 500 5 ALA A 31 -77.46 -102.89 REMARK 500 5 THR A 50 61.91 -116.05 REMARK 500 5 LYS A 61 -76.35 -162.61 REMARK 500 5 GLU A 64 -80.77 65.08 REMARK 500 6 ALA A 31 -78.39 -106.94 REMARK 500 6 LYS A 61 -76.42 -167.18 REMARK 500 6 GLU A 64 -84.02 61.90 REMARK 500 7 ALA A 16 54.29 -91.75 REMARK 500 7 ALA A 31 -77.61 -104.81 REMARK 500 7 LYS A 61 -77.30 -162.27 REMARK 500 7 GLU A 64 -81.21 64.63 REMARK 500 7 THR A 83 -60.15 -109.35 REMARK 500 8 ALA A 16 56.35 -95.05 REMARK 500 8 ALA A 31 -77.88 -103.49 REMARK 500 8 THR A 50 63.16 -115.37 REMARK 500 8 LYS A 61 -76.92 -170.55 REMARK 500 8 GLU A 64 -83.12 62.68 REMARK 500 9 ALA A 31 -77.44 -103.07 REMARK 500 9 THR A 50 66.07 -115.13 REMARK 500 9 LYS A 61 -73.74 -159.72 REMARK 500 9 GLU A 64 -81.47 64.62 REMARK 500 9 THR A 83 168.76 63.39 REMARK 500 9 VAL A 84 82.44 61.02 REMARK 500 10 VAL A 17 58.55 -99.46 REMARK 500 10 ALA A 31 -79.20 -104.78 REMARK 500 10 THR A 50 65.64 -115.09 REMARK 500 10 LYS A 61 -76.59 -168.07 REMARK 500 10 GLU A 64 -81.96 64.63 REMARK 500 11 VAL A 17 49.93 -100.46 REMARK 500 11 ALA A 31 -78.81 -104.03 REMARK 500 11 LYS A 61 -69.55 -164.41 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25036 RELATED DB: BMRB DBREF 2MQJ A 9 95 UNP E6N8B8 E6N8B8_9ARCH 1 87 SEQADV 2MQJ HIS A 8 UNP E6N8B8 EXPRESSION TAG SEQRES 1 A 88 HIS MET LYS ILE LYS ILE VAL PRO ALA VAL GLY GLY GLY SEQRES 2 A 88 SER PRO LEU GLU LEU GLU VAL ALA PRO ASN ALA THR VAL SEQRES 3 A 88 GLY ALA VAL ARG THR LYS VAL CYS ALA MET LYS LYS LEU SEQRES 4 A 88 PRO PRO ASP THR THR ARG LEU THR TYR LYS GLY ARG ALA SEQRES 5 A 88 LEU LYS ASP THR GLU THR LEU GLU SER LEU GLY VAL ALA SEQRES 6 A 88 ASP GLY ASP LYS PHE VAL LEU ILE THR ARG THR VAL GLY SEQRES 7 A 88 GLY CYS GLY GLU PRO ILE ARG ARG ALA ALA HELIX 1 1 THR A 32 LYS A 45 1 14 SHEET 1 A 4 LEU A 23 LEU A 25 0 SHEET 2 A 4 ILE A 11 PRO A 15 -1 N ILE A 11 O LEU A 25 SHEET 3 A 4 LYS A 76 THR A 81 1 O PHE A 77 N LYS A 12 SHEET 4 A 4 THR A 51 THR A 54 -1 N THR A 54 O VAL A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1