HEADER HYDROLASE 23-JUN-14 2MQK TITLE SOLUTION STRUCTURE OF N TERMINAL DOMAIN OF THE MUB AAA+ ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT TARGET DNA ACTIVATOR B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 1-63; COMPND 5 SYNONYM: GENE PRODUCT B, GPB, MUB; COMPND 6 EC: 3.6.1.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE MU; SOURCE 3 ORGANISM_TAXID: 10677; SOURCE 4 GENE: B, MUP04; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: POPINB KEYWDS HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.LOPEZ-MENDEZ,M.DRAMICANIN,R.CAMPOS-OLIVAS,S.RAMON-MAIQUES REVDAT 2 14-JUN-23 2MQK 1 REMARK SEQADV REVDAT 1 01-JUL-15 2MQK 0 JRNL AUTH M.DRAMICANIN,B.LOPEZ-MENDEZ,R.CAMPOS-OLIVAS,S.RAMON-MAIQUES JRNL TITL SOLUTION STRUCTURE OF N TERMINAL DOMAIN OF THE MUB AAA+ JRNL TITL 2 ATPASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.2.6, OPAL 1.4, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH (OPAL), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000103932. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 500 UM MUB-NTD-1, 20 MM SODIUM REMARK 210 PHOSPHATE-2, 100 MM SODIUM REMARK 210 CHLORIDE-3, 93% H2O/7% D2O; 500 REMARK 210 UM [U-98% 15N] MUB-NTD-4, 20 MM REMARK 210 SODIUM PHOSPHATE-5, 100 MM REMARK 210 SODIUM CHLORIDE-6, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D HNHA; 2D 1H-1H TOCSY; 2D 1H- REMARK 210 1H NOESY; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CCPN 2.3.1, TOPSPIN REMARK 210 2.1, TALOS+ REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 4 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 13 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 17 17.79 59.65 REMARK 500 2 PRO A 0 98.49 -67.05 REMARK 500 5 GLU A 17 18.60 59.72 REMARK 500 6 THR A 19 -171.21 -173.86 REMARK 500 10 GLU A 17 29.68 47.30 REMARK 500 10 ASP A 41 -1.64 67.06 REMARK 500 11 PRO A 0 108.96 -53.53 REMARK 500 11 ASP A 41 19.88 58.67 REMARK 500 11 ASP A 46 17.63 107.22 REMARK 500 12 THR A 19 -168.21 -171.28 REMARK 500 13 ASN A 44 -75.21 -60.78 REMARK 500 14 GLU A 17 19.95 59.47 REMARK 500 14 TYR A 43 91.07 -65.96 REMARK 500 16 ASN A 44 -169.98 -72.46 REMARK 500 18 GLU A 17 15.06 57.66 REMARK 500 19 PRO A 0 94.02 -65.97 REMARK 500 19 GLU A 17 13.79 56.85 REMARK 500 19 ASN A 44 75.58 -153.13 REMARK 500 19 ASP A 46 58.40 76.87 REMARK 500 20 GLU A 17 18.57 56.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 56 0.09 SIDE CHAIN REMARK 500 6 TYR A 43 0.09 SIDE CHAIN REMARK 500 7 ARG A 49 0.10 SIDE CHAIN REMARK 500 9 ARG A 49 0.12 SIDE CHAIN REMARK 500 11 TYR A 43 0.09 SIDE CHAIN REMARK 500 11 ARG A 49 0.08 SIDE CHAIN REMARK 500 14 ARG A 11 0.08 SIDE CHAIN REMARK 500 18 ARG A 49 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25037 RELATED DB: BMRB DBREF 2MQK A 1 63 UNP P03763 TARGB_BPMU 1 63 SEQADV 2MQK GLY A -1 UNP P03763 EXPRESSION TAG SEQADV 2MQK PRO A 0 UNP P03763 EXPRESSION TAG SEQADV 2MQK THR A 53 UNP P03763 MET 53 ENGINEERED MUTATION SEQRES 1 A 65 GLY PRO MET ASN ILE SER ASP ILE ARG ALA GLY LEU ARG SEQRES 2 A 65 THR LEU VAL GLU ASN GLU GLU THR THR PHE LYS GLN ILE SEQRES 3 A 65 ALA LEU GLU SER GLY LEU SER THR GLY THR ILE SER SER SEQRES 4 A 65 PHE ILE ASN ASP LYS TYR ASN GLY ASP ASN GLU ARG VAL SEQRES 5 A 65 SER GLN THR LEU GLN ARG TRP LEU GLU LYS TYR HIS ALA HELIX 1 1 ASN A 2 ASN A 16 1 15 HELIX 2 2 THR A 20 GLY A 29 1 10 HELIX 3 3 SER A 31 ASN A 40 1 10 HELIX 4 4 ASP A 46 ALA A 63 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1