HEADER RNA BINDING PROTEIN/RNA 24-JUN-14 2MQO TITLE STRUCTURAL INVESTIGATION OF HNRNP L BOUND TO RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HNRNPL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 86-190; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*CP*AP*CP*AP*CP*A)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: HNRNPL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PTYB11; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES KEYWDS PROTEIN-RNA COMPLEX, RRM, RNA BINDING PROTEIN, RNA BINDING PROTEIN- KEYWDS 2 RNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.BLATTER,F.ALLAIN REVDAT 1 23-DEC-15 2MQO 0 JRNL AUTH M.BLATTER,F.ALLAIN JRNL TITL STRUCTURAL INVESTIGATION OF HNRNP L BOUND TO RNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-14. REMARK 100 THE RCSB ID CODE IS RCSB103936. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310.15 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-100% 15N] PROTEIN_1, 2 REMARK 210 MM RNA (5'-R(*CP*AP*CP*AP*CP*A)- REMARK 210 3'), 60 MM SODIUM CHLORIDE, 40 MM REMARK 210 SODIUM PHOSPHATE, 1 MM DTT, 90% REMARK 210 H2O/10% D2O; 2 MM [U-100% 13C; U- REMARK 210 100% 15N] PROTEIN_1, 2 MM RNA (5' REMARK 210 -R(*CP*AP*CP*AP*CP*A)-3'), 60 MM REMARK 210 SODIUM CHLORIDE, 40 MM SODIUM REMARK 210 PHOSPHATE, 1 MM DTT, 90% H2O/10% REMARK 210 D2O; 2 MM [U-100% 15N] PROTEIN_1, REMARK 210 2 MM RNA (5'-R(*CP*AP*CP*AP*CP*A) REMARK 210 -3'), 60 MM SODIUM CHLORIDE, 40 REMARK 210 MM SODIUM PHOSPHATE, 1 MM DTT, REMARK 210 100% D2O; 2 MM [U-100% 13C; U- REMARK 210 100% 15N] PROTEIN_1, 2 MM RNA (5' REMARK 210 -R(*CP*AP*CP*AP*CP*A)-3'), 60 MM REMARK 210 SODIUM CHLORIDE, 40 MM SODIUM REMARK 210 PHOSPHATE, 1 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-1H NOESY; 2D 1H- REMARK 210 1H TOCSY; 3D F3-FILTERED-F2- REMARK 210 EDITED NOESY; 2D F2-FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 2 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 3 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 4 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 5 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 6 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 7 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 9 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 10 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 11 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 12 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 13 A B 2 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 14 A B 2 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 17 A B 2 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 19 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 20 A B 2 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 86 176.39 59.20 REMARK 500 1 SER A 185 159.53 61.50 REMARK 500 1 VAL A 186 1.82 54.97 REMARK 500 1 ASN A 187 -9.28 -154.49 REMARK 500 2 ASP A 182 18.06 58.43 REMARK 500 2 SER A 185 10.18 58.24 REMARK 500 3 ASP A 181 165.56 64.85 REMARK 500 3 SER A 185 160.66 61.71 REMARK 500 3 VAL A 186 16.53 56.02 REMARK 500 3 ASN A 187 14.66 -151.63 REMARK 500 4 GLU A 85 -10.82 -146.22 REMARK 500 4 ALA A 153 3.28 -69.77 REMARK 500 4 PRO A 177 22.55 -71.81 REMARK 500 4 SER A 180 7.88 57.99 REMARK 500 4 SER A 185 -169.69 54.77 REMARK 500 4 ASN A 187 10.96 -152.11 REMARK 500 5 TYR A 87 -6.52 62.82 REMARK 500 5 SER A 180 161.07 61.34 REMARK 500 5 ASP A 182 9.88 -68.64 REMARK 500 5 VAL A 186 13.26 52.94 REMARK 500 6 ASP A 181 2.04 56.03 REMARK 500 6 SER A 183 15.33 -150.54 REMARK 500 6 VAL A 186 14.61 58.38 REMARK 500 6 ASN A 187 10.31 -144.10 REMARK 500 7 ARG A 176 160.00 58.06 REMARK 500 7 SER A 185 13.43 56.17 REMARK 500 8 SER A 183 19.08 58.39 REMARK 500 8 VAL A 186 5.42 55.71 REMARK 500 8 ASN A 187 14.51 -153.26 REMARK 500 9 ALA A 153 1.90 -69.56 REMARK 500 9 SER A 183 11.42 57.42 REMARK 500 9 SER A 185 14.87 56.59 REMARK 500 9 ASN A 187 17.40 55.60 REMARK 500 10 SER A 180 161.52 60.57 REMARK 500 10 ASP A 182 2.57 59.51 REMARK 500 10 SER A 183 12.84 -155.84 REMARK 500 10 SER A 185 19.08 54.20 REMARK 500 10 ASN A 187 -5.43 -144.57 REMARK 500 11 ASP A 181 172.29 54.62 REMARK 500 11 ASP A 182 -73.19 61.78 REMARK 500 11 SER A 185 163.39 60.51 REMARK 500 12 GLU A 85 -179.14 57.41 REMARK 500 12 SER A 180 13.54 55.19 REMARK 500 12 ASP A 181 -33.43 61.30 REMARK 500 12 VAL A 186 12.05 54.29 REMARK 500 12 ASN A 187 74.96 -158.03 REMARK 500 13 ALA A 153 2.83 -69.99 REMARK 500 13 ASP A 182 -58.33 65.17 REMARK 500 13 VAL A 186 14.19 55.47 REMARK 500 13 ASN A 187 -16.58 -148.86 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25041 RELATED DB: BMRB REMARK 900 RELATED ID: 2MQL RELATED DB: PDB REMARK 900 RELATED ID: 2MQM RELATED DB: PDB REMARK 900 RELATED ID: 2MQN RELATED DB: PDB REMARK 900 RELATED ID: 2MQP RELATED DB: PDB REMARK 900 RELATED ID: 2MQQ RELATED DB: PDB REMARK 900 RELATED ID: 4QPT RELATED DB: PDB DBREF 2MQO A 84 188 UNP F2Z3R2 F2Z3R2_RAT 86 190 DBREF 2MQO B 1 6 PDB 2MQO 2MQO 1 6 SEQRES 1 A 105 GLY GLU ASN TYR ASP ASP PRO HIS LYS THR PRO ALA SER SEQRES 2 A 105 PRO VAL VAL HIS ILE ARG GLY LEU ILE ASP GLY VAL VAL SEQRES 3 A 105 GLU ALA ASP LEU VAL GLU ALA LEU GLN GLU PHE GLY PRO SEQRES 4 A 105 ILE SER TYR VAL VAL VAL MET PRO LYS LYS ARG GLN ALA SEQRES 5 A 105 LEU VAL GLU PHE GLU ASP VAL LEU GLY ALA CYS ASN ALA SEQRES 6 A 105 VAL ASN TYR ALA ALA ASP ASN GLN ILE TYR ILE ALA GLY SEQRES 7 A 105 HIS PRO ALA PHE VAL ASN TYR SER THR SER GLN LYS ILE SEQRES 8 A 105 SER ARG PRO GLY ASP SER ASP ASP SER ARG SER VAL ASN SEQRES 9 A 105 SER SEQRES 1 B 6 C A C A C A HELIX 1 1 VAL A 109 GLN A 118 1 10 HELIX 2 2 GLU A 119 GLY A 121 5 3 HELIX 3 3 ASP A 141 ALA A 153 1 13 HELIX 4 4 SER A 180 ARG A 184 5 5 SHEET 1 A 5 ILE A 123 MET A 129 0 SHEET 2 A 5 GLN A 134 PHE A 139 -1 O GLU A 138 N SER A 124 SHEET 3 A 5 VAL A 98 ARG A 102 -1 N ILE A 101 O ALA A 135 SHEET 4 A 5 HIS A 162 TYR A 168 -1 O PHE A 165 N ARG A 102 SHEET 5 A 5 ILE A 157 ILE A 159 -1 N ILE A 159 O HIS A 162 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1