data_2MQP # _entry.id 2MQP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MQP pdb_00002mqp 10.2210/pdb2mqp/pdb RCSB RCSB103937 ? ? BMRB 25042 ? ? WWPDB D_1000103937 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 2MQL PDB unspecified . 2MQM PDB unspecified . 2MQN PDB unspecified . 2MQO PDB unspecified . 2MQQ PDB unspecified . 25042 BMRB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MQP _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-06-24 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Blatter, M.' 1 'Allain, F.' 2 # _citation.id primary _citation.title 'Structural Investigation of hnRNP L bound to RNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Blatter, M.' 1 ? primary 'Allain, F.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein Hnrnpl' 13079.706 1 ? ? 'unp residues 174-291' ? 2 polymer syn ;RNA (5'-R(*AP*CP*AP*CP*AP*C)-3') ; 1858.205 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADI YSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQG ; ;QKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADI YSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQG ; A ? 2 polyribonucleotide no no ACACAC ACACAC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 LYS n 1 3 ILE n 1 4 SER n 1 5 ARG n 1 6 PRO n 1 7 GLY n 1 8 ASP n 1 9 SER n 1 10 ASP n 1 11 ASP n 1 12 SER n 1 13 ARG n 1 14 SER n 1 15 VAL n 1 16 ASN n 1 17 SER n 1 18 VAL n 1 19 LEU n 1 20 LEU n 1 21 PHE n 1 22 THR n 1 23 ILE n 1 24 LEU n 1 25 ASN n 1 26 PRO n 1 27 ILE n 1 28 TYR n 1 29 SER n 1 30 ILE n 1 31 THR n 1 32 THR n 1 33 ASP n 1 34 VAL n 1 35 LEU n 1 36 TYR n 1 37 THR n 1 38 ILE n 1 39 CYS n 1 40 ASN n 1 41 PRO n 1 42 CYS n 1 43 GLY n 1 44 PRO n 1 45 VAL n 1 46 GLN n 1 47 ARG n 1 48 ILE n 1 49 VAL n 1 50 ILE n 1 51 PHE n 1 52 ARG n 1 53 LYS n 1 54 ASN n 1 55 GLY n 1 56 VAL n 1 57 GLN n 1 58 ALA n 1 59 MET n 1 60 VAL n 1 61 GLU n 1 62 PHE n 1 63 ASP n 1 64 SER n 1 65 VAL n 1 66 GLN n 1 67 SER n 1 68 ALA n 1 69 GLN n 1 70 ARG n 1 71 ALA n 1 72 LYS n 1 73 ALA n 1 74 SER n 1 75 LEU n 1 76 ASN n 1 77 GLY n 1 78 ALA n 1 79 ASP n 1 80 ILE n 1 81 TYR n 1 82 SER n 1 83 GLY n 1 84 CYS n 1 85 CYS n 1 86 THR n 1 87 LEU n 1 88 LYS n 1 89 ILE n 1 90 GLU n 1 91 TYR n 1 92 ALA n 1 93 LYS n 1 94 PRO n 1 95 THR n 1 96 ARG n 1 97 LEU n 1 98 ASN n 1 99 VAL n 1 100 PHE n 1 101 LYS n 1 102 ASN n 1 103 ASP n 1 104 GLN n 1 105 ASP n 1 106 THR n 1 107 TRP n 1 108 ASP n 1 109 TYR n 1 110 THR n 1 111 ASN n 1 112 PRO n 1 113 ASN n 1 114 LEU n 1 115 SER n 1 116 GLY n 1 117 GLN n 1 118 GLY n 2 1 A n 2 2 C n 2 3 A n 2 4 C n 2 5 A n 2 6 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'brown rat,rat,rats' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Hnrnpl _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pTYB11 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP F2Z3R2_RAT F2Z3R2 1 ;QKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADI YSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQG ; 174 ? 2 PDB 2MQP 2MQP 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MQP A 1 ? 118 ? F2Z3R2 174 ? 291 ? 174 291 2 2 2MQP B 1 ? 6 ? 2MQP 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-15N NOESY' 1 2 2 '3D 1H-13C NOESY aliphatic' 1 3 2 '3D 1H-13C NOESY aromatic' 1 4 3 '2D 1H-1H NOESY' 1 5 3 '2D 1H-1H TOCSY' 1 6 4 '3D F3-filtered-F2-edited NOESY' 1 7 4 '2D F2-filtered NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 310.15 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;2 mM [U-100% 15N] protein_1, 2 mM RNA (5'-R(*AP*CP*AP*CP*AP*C)-3'), 60 mM sodium chloride, 40 mM sodium phosphate, 1 mM DTT, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;2 mM [U-100% 13C; U-100% 15N] protein_1, 2 mM RNA (5'-R(*AP*CP*AP*CP*AP*C)-3'), 60 mM sodium chloride, 40 mM sodium phosphate, 1 mM DTT, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' '2 mM [U-100% 15N] protein_1, 2 mM protein_1, 60 mM sodium chloride, 40 mM sodium phosphate, 1 mM DTT, 100% D2O' 3 '100% D2O' ;2 mM [U-100% 13C; U-100% 15N] protein_1, 2 mM RNA (5'-R(*AP*CP*AP*CP*AP*C)-3'), 60 mM sodium chloride, 40 mM sodium phosphate, 1 mM DTT, 100% D2O ; 4 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Bruker AVANCE 1 'Bruker Avance' 700 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MQP _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 250 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MQP _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MQP _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin ? 1 'Bruker Biospin' processing TopSpin ? 2 Goddard 'chemical shift assignment' Sparky ? 3 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 4 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement Amber ? 5 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Second RNA Recognition Motif Domain of hnRNP L bound to ACACAC RNA' _exptl.entry_id 2MQP _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MQP _struct.title 'Structural Investigation of hnRNP L bound to RNA' _struct.pdbx_model_details 'closest to the average, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MQP _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'Protein-RNA Complex, RRM, RNA BINDING PROTEIN-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 9 ? SER A 14 ? SER A 182 SER A 187 1 ? 6 HELX_P HELX_P2 2 THR A 31 ? ASN A 40 ? THR A 204 ASN A 213 1 ? 10 HELX_P HELX_P3 3 PRO A 41 ? GLY A 43 ? PRO A 214 GLY A 216 5 ? 3 HELX_P HELX_P4 4 SER A 64 ? LEU A 75 ? SER A 237 LEU A 248 1 ? 12 HELX_P HELX_P5 5 ASN A 111 ? GLN A 117 ? ASN A 284 GLN A 290 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 87 ? TYR A 91 ? LEU A 260 TYR A 264 A 2 VAL A 18 ? ILE A 23 ? VAL A 191 ILE A 196 A 3 GLN A 57 ? PHE A 62 ? GLN A 230 PHE A 235 A 4 VAL A 45 ? PHE A 51 ? VAL A 218 PHE A 224 A 5 THR A 106 ? ASP A 108 ? THR A 279 ASP A 281 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 90 ? O GLU A 263 N LEU A 20 ? N LEU A 193 A 2 3 N PHE A 21 ? N PHE A 194 O ALA A 58 ? O ALA A 231 A 3 4 O GLU A 61 ? O GLU A 234 N GLN A 46 ? N GLN A 219 A 4 5 N ILE A 48 ? N ILE A 221 O TRP A 107 ? O TRP A 280 # _atom_sites.entry_id 2MQP _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 174 174 GLN GLN A . n A 1 2 LYS 2 175 175 LYS LYS A . n A 1 3 ILE 3 176 176 ILE ILE A . n A 1 4 SER 4 177 177 SER SER A . n A 1 5 ARG 5 178 178 ARG ARG A . n A 1 6 PRO 6 179 179 PRO PRO A . n A 1 7 GLY 7 180 180 GLY GLY A . n A 1 8 ASP 8 181 181 ASP ASP A . n A 1 9 SER 9 182 182 SER SER A . n A 1 10 ASP 10 183 183 ASP ASP A . n A 1 11 ASP 11 184 184 ASP ASP A . n A 1 12 SER 12 185 185 SER SER A . n A 1 13 ARG 13 186 186 ARG ARG A . n A 1 14 SER 14 187 187 SER SER A . n A 1 15 VAL 15 188 188 VAL VAL A . n A 1 16 ASN 16 189 189 ASN ASN A . n A 1 17 SER 17 190 190 SER SER A . n A 1 18 VAL 18 191 191 VAL VAL A . n A 1 19 LEU 19 192 192 LEU LEU A . n A 1 20 LEU 20 193 193 LEU LEU A . n A 1 21 PHE 21 194 194 PHE PHE A . n A 1 22 THR 22 195 195 THR THR A . n A 1 23 ILE 23 196 196 ILE ILE A . n A 1 24 LEU 24 197 197 LEU LEU A . n A 1 25 ASN 25 198 198 ASN ASN A . n A 1 26 PRO 26 199 199 PRO PRO A . n A 1 27 ILE 27 200 200 ILE ILE A . n A 1 28 TYR 28 201 201 TYR TYR A . n A 1 29 SER 29 202 202 SER SER A . n A 1 30 ILE 30 203 203 ILE ILE A . n A 1 31 THR 31 204 204 THR THR A . n A 1 32 THR 32 205 205 THR THR A . n A 1 33 ASP 33 206 206 ASP ASP A . n A 1 34 VAL 34 207 207 VAL VAL A . n A 1 35 LEU 35 208 208 LEU LEU A . n A 1 36 TYR 36 209 209 TYR TYR A . n A 1 37 THR 37 210 210 THR THR A . n A 1 38 ILE 38 211 211 ILE ILE A . n A 1 39 CYS 39 212 212 CYS CYS A . n A 1 40 ASN 40 213 213 ASN ASN A . n A 1 41 PRO 41 214 214 PRO PRO A . n A 1 42 CYS 42 215 215 CYS CYS A . n A 1 43 GLY 43 216 216 GLY GLY A . n A 1 44 PRO 44 217 217 PRO PRO A . n A 1 45 VAL 45 218 218 VAL VAL A . n A 1 46 GLN 46 219 219 GLN GLN A . n A 1 47 ARG 47 220 220 ARG ARG A . n A 1 48 ILE 48 221 221 ILE ILE A . n A 1 49 VAL 49 222 222 VAL VAL A . n A 1 50 ILE 50 223 223 ILE ILE A . n A 1 51 PHE 51 224 224 PHE PHE A . n A 1 52 ARG 52 225 225 ARG ARG A . n A 1 53 LYS 53 226 226 LYS LYS A . n A 1 54 ASN 54 227 227 ASN ASN A . n A 1 55 GLY 55 228 228 GLY GLY A . n A 1 56 VAL 56 229 229 VAL VAL A . n A 1 57 GLN 57 230 230 GLN GLN A . n A 1 58 ALA 58 231 231 ALA ALA A . n A 1 59 MET 59 232 232 MET MET A . n A 1 60 VAL 60 233 233 VAL VAL A . n A 1 61 GLU 61 234 234 GLU GLU A . n A 1 62 PHE 62 235 235 PHE PHE A . n A 1 63 ASP 63 236 236 ASP ASP A . n A 1 64 SER 64 237 237 SER SER A . n A 1 65 VAL 65 238 238 VAL VAL A . n A 1 66 GLN 66 239 239 GLN GLN A . n A 1 67 SER 67 240 240 SER SER A . n A 1 68 ALA 68 241 241 ALA ALA A . n A 1 69 GLN 69 242 242 GLN GLN A . n A 1 70 ARG 70 243 243 ARG ARG A . n A 1 71 ALA 71 244 244 ALA ALA A . n A 1 72 LYS 72 245 245 LYS LYS A . n A 1 73 ALA 73 246 246 ALA ALA A . n A 1 74 SER 74 247 247 SER SER A . n A 1 75 LEU 75 248 248 LEU LEU A . n A 1 76 ASN 76 249 249 ASN ASN A . n A 1 77 GLY 77 250 250 GLY GLY A . n A 1 78 ALA 78 251 251 ALA ALA A . n A 1 79 ASP 79 252 252 ASP ASP A . n A 1 80 ILE 80 253 253 ILE ILE A . n A 1 81 TYR 81 254 254 TYR TYR A . n A 1 82 SER 82 255 255 SER SER A . n A 1 83 GLY 83 256 256 GLY GLY A . n A 1 84 CYS 84 257 257 CYS CYS A . n A 1 85 CYS 85 258 258 CYS CYS A . n A 1 86 THR 86 259 259 THR THR A . n A 1 87 LEU 87 260 260 LEU LEU A . n A 1 88 LYS 88 261 261 LYS LYS A . n A 1 89 ILE 89 262 262 ILE ILE A . n A 1 90 GLU 90 263 263 GLU GLU A . n A 1 91 TYR 91 264 264 TYR TYR A . n A 1 92 ALA 92 265 265 ALA ALA A . n A 1 93 LYS 93 266 266 LYS LYS A . n A 1 94 PRO 94 267 267 PRO PRO A . n A 1 95 THR 95 268 268 THR THR A . n A 1 96 ARG 96 269 269 ARG ARG A . n A 1 97 LEU 97 270 270 LEU LEU A . n A 1 98 ASN 98 271 271 ASN ASN A . n A 1 99 VAL 99 272 272 VAL VAL A . n A 1 100 PHE 100 273 273 PHE PHE A . n A 1 101 LYS 101 274 274 LYS LYS A . n A 1 102 ASN 102 275 275 ASN ASN A . n A 1 103 ASP 103 276 276 ASP ASP A . n A 1 104 GLN 104 277 277 GLN GLN A . n A 1 105 ASP 105 278 278 ASP ASP A . n A 1 106 THR 106 279 279 THR THR A . n A 1 107 TRP 107 280 280 TRP TRP A . n A 1 108 ASP 108 281 281 ASP ASP A . n A 1 109 TYR 109 282 282 TYR TYR A . n A 1 110 THR 110 283 283 THR THR A . n A 1 111 ASN 111 284 284 ASN ASN A . n A 1 112 PRO 112 285 285 PRO PRO A . n A 1 113 ASN 113 286 286 ASN ASN A . n A 1 114 LEU 114 287 287 LEU LEU A . n A 1 115 SER 115 288 288 SER SER A . n A 1 116 GLY 116 289 289 GLY GLY A . n A 1 117 GLN 117 290 290 GLN GLN A . n A 1 118 GLY 118 291 291 GLY GLY A . n B 2 1 A 1 1 1 A A B . n B 2 2 C 2 2 2 C C B . n B 2 3 A 3 3 3 A A B . n B 2 4 C 4 4 4 C C B . n B 2 5 A 5 5 5 A A B . n B 2 6 C 6 6 6 C C B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-12-23 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_related 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_related.db_id' 2 2 'Structure model' '_pdbx_database_related.db_name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 6 3 'Structure model' '_pdbx_nmr_software.name' 7 3 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id entity_1-1 2 ? mM '[U-100% 15N]' 1 ;RNA (5'-R(*AP*CP*AP*CP*AP*C)-3')-2 ; 2 ? mM ? 1 'sodium chloride-3' 60 ? mM ? 1 'sodium phosphate-4' 40 ? mM ? 1 DTT-5 1 ? mM ? 1 entity_1-6 2 ? mM '[U-100% 13C; U-100% 15N]' 2 ;RNA (5'-R(*AP*CP*AP*CP*AP*C)-3')-7 ; 2 ? mM ? 2 'sodium chloride-8' 60 ? mM ? 2 'sodium phosphate-9' 40 ? mM ? 2 DTT-10 1 ? mM ? 2 entity_1-11 2 ? mM '[U-100% 15N]' 3 entity_1-12 2 ? mM ? 3 'sodium chloride-13' 60 ? mM ? 3 'sodium phosphate-14' 40 ? mM ? 3 DTT-15 1 ? mM ? 3 entity_1-16 2 ? mM '[U-100% 13C; U-100% 15N]' 4 ;RNA (5'-R(*AP*CP*AP*CP*AP*C)-3')-17 ; 2 ? mM ? 4 'sodium chloride-18' 60 ? mM ? 4 'sodium phosphate-19' 40 ? mM ? 4 DTT-20 1 ? mM ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 11 "HO2'" B C 2 ? ? OP2 B A 3 ? ? 1.55 2 19 "HO2'" B C 2 ? ? OP2 B A 3 ? ? 1.54 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B A 3 ? ? "C1'" B A 3 ? ? N9 B A 3 ? ? 112.73 108.50 4.23 0.70 N 2 7 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 116.15 108.50 7.65 0.70 N 3 11 "O4'" B A 3 ? ? "C1'" B A 3 ? ? N9 B A 3 ? ? 113.14 108.50 4.64 0.70 N 4 19 "O4'" B A 3 ? ? "C1'" B A 3 ? ? N9 B A 3 ? ? 112.88 108.50 4.38 0.70 N 5 19 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 113.45 108.50 4.95 0.70 N 6 20 "O4'" B A 3 ? ? "C1'" B A 3 ? ? N9 B A 3 ? ? 112.96 108.50 4.46 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 181 ? ? -140.37 -45.60 2 1 ARG A 186 ? ? -149.22 10.99 3 1 PRO A 199 ? ? -77.34 45.31 4 1 ASP A 276 ? ? -160.50 -166.63 5 2 ASP A 181 ? ? -149.14 -54.66 6 2 SER A 187 ? ? -147.16 10.50 7 2 PRO A 199 ? ? -77.98 46.55 8 3 SER A 185 ? ? -141.79 -1.55 9 3 ARG A 186 ? ? -147.06 11.13 10 3 PRO A 199 ? ? -77.89 46.40 11 3 THR A 283 ? ? -141.05 -23.06 12 4 ASP A 181 ? ? -142.67 -45.81 13 4 ARG A 186 ? ? -151.45 9.19 14 4 ASP A 276 ? ? -162.69 -167.98 15 4 GLN A 290 ? ? 57.42 177.79 16 5 ASP A 181 ? ? -130.97 -53.63 17 5 SER A 185 ? ? -149.75 11.04 18 5 SER A 187 ? ? -147.73 12.72 19 5 PRO A 199 ? ? -77.61 44.56 20 6 SER A 177 ? ? 59.84 152.30 21 6 ARG A 178 ? ? -146.10 -53.53 22 6 PRO A 199 ? ? -76.91 44.71 23 6 THR A 283 ? ? -140.54 -21.66 24 7 ARG A 178 ? ? -138.33 -38.24 25 7 SER A 185 ? ? -147.18 -0.79 26 7 PRO A 199 ? ? -78.37 45.92 27 7 THR A 283 ? ? -142.49 -17.45 28 8 ASP A 181 ? ? -138.49 -53.25 29 8 PRO A 199 ? ? -78.60 44.20 30 8 ASN A 271 ? ? -116.67 53.31 31 8 THR A 283 ? ? -140.60 -14.65 32 9 SER A 187 ? ? -147.20 12.40 33 9 PRO A 199 ? ? -77.01 49.59 34 9 ASP A 276 ? ? -160.58 -166.12 35 10 SER A 185 ? ? -140.96 -0.41 36 10 ARG A 186 ? ? -148.18 10.49 37 10 PRO A 199 ? ? -78.23 45.83 38 10 PRO A 217 ? ? -66.63 85.45 39 10 GLN A 290 ? ? 55.20 19.77 40 11 ARG A 178 ? ? -136.18 -39.06 41 11 SER A 185 ? ? -143.90 -0.73 42 11 SER A 190 ? ? 56.14 13.85 43 11 PRO A 199 ? ? -77.74 46.03 44 12 ARG A 186 ? ? -144.15 -1.78 45 12 PRO A 199 ? ? -76.93 48.56 46 12 ASP A 276 ? ? -161.03 -167.39 47 13 SER A 187 ? ? -155.12 17.88 48 13 PRO A 199 ? ? -76.74 49.89 49 13 ASN A 271 ? ? -117.31 53.42 50 14 SER A 187 ? ? -147.07 12.38 51 14 PRO A 199 ? ? -77.90 44.25 52 14 ASN A 271 ? ? -117.34 54.52 53 15 LYS A 175 ? ? 61.48 154.48 54 15 SER A 187 ? ? -145.74 17.39 55 15 PRO A 199 ? ? -77.34 45.73 56 15 PRO A 217 ? ? -69.27 98.86 57 15 THR A 283 ? ? -141.18 -11.83 58 16 SER A 187 ? ? -148.21 13.01 59 16 PRO A 199 ? ? -77.41 49.03 60 16 THR A 283 ? ? -142.99 -16.25 61 16 SER A 288 ? ? 52.83 10.28 62 17 ARG A 186 ? ? -147.86 10.25 63 17 PRO A 199 ? ? -76.86 49.97 64 17 ASN A 271 ? ? -115.42 50.88 65 17 THR A 283 ? ? -140.89 -12.94 66 17 SER A 288 ? ? 53.17 12.89 67 18 SER A 187 ? ? -147.44 12.11 68 18 PRO A 199 ? ? -78.42 47.22 69 19 SER A 185 ? ? -143.51 -6.28 70 19 ARG A 186 ? ? -145.68 10.15 71 19 SER A 190 ? ? 57.02 12.21 72 19 PRO A 199 ? ? -76.71 46.63 73 20 ARG A 186 ? ? -147.59 10.62 74 20 SER A 187 ? ? -150.89 15.57 75 20 PRO A 199 ? ? -76.98 42.70 #