HEADER RNA BINDING PROTEIN/RNA 24-JUN-14 2MQP TITLE STRUCTURAL INVESTIGATION OF HNRNP L BOUND TO RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HNRNPL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 174-291; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*AP*CP*AP*CP*AP*C)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: HNRNPL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PTYB11; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES KEYWDS PROTEIN-RNA COMPLEX, RRM, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.BLATTER,F.ALLAIN REVDAT 3 14-JUN-23 2MQP 1 REMARK REVDAT 2 15-NOV-17 2MQP 1 REMARK REVDAT 1 23-DEC-15 2MQP 0 JRNL AUTH M.BLATTER,F.ALLAIN JRNL TITL STRUCTURAL INVESTIGATION OF HNRNP L BOUND TO RNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, AMBER REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000103937. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310.15 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-100% 15N] PROTEIN_1, 2 REMARK 210 MM RNA (5'-R(*AP*CP*AP*CP*AP*C)- REMARK 210 3'), 60 MM SODIUM CHLORIDE, 40 REMARK 210 MM SODIUM PHOSPHATE, 1 MM DTT, REMARK 210 90% H2O/10% D2O; 2 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN_1, 2 MM REMARK 210 RNA (5'-R(*AP*CP*AP*CP*AP*C)-3'), REMARK 210 60 MM SODIUM CHLORIDE, 40 MM REMARK 210 SODIUM PHOSPHATE, 1 MM DTT, 90% REMARK 210 H2O/10% D2O; 2 MM [U-100% 15N] REMARK 210 PROTEIN_1, 2 MM PROTEIN_1, 60 MM REMARK 210 SODIUM CHLORIDE, 40 MM SODIUM REMARK 210 PHOSPHATE, 1 MM DTT, 100% D2O; 2 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN_1, 2 MM RNA (5'-R(*AP*CP* REMARK 210 AP*CP*AP*C)-3'), 60 MM SODIUM REMARK 210 CHLORIDE, 40 MM SODIUM PHOSPHATE, REMARK 210 1 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-1H NOESY; 2D 1H- REMARK 210 1H TOCSY; 3D F3-FILTERED-F2- REMARK 210 EDITED NOESY; 2D F2-FILTERED REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 A B 3 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 7 C B 6 O4' - C1' - N1 ANGL. DEV. = 7.7 DEGREES REMARK 500 11 A B 3 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 19 A B 3 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 19 C B 6 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 20 A B 3 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 181 -45.60 -140.37 REMARK 500 1 ARG A 186 10.99 -149.22 REMARK 500 1 PRO A 199 45.31 -77.34 REMARK 500 1 ASP A 276 -166.63 -160.50 REMARK 500 2 ASP A 181 -54.66 -149.14 REMARK 500 2 SER A 187 10.50 -147.16 REMARK 500 2 PRO A 199 46.55 -77.98 REMARK 500 3 SER A 185 -1.55 -141.79 REMARK 500 3 ARG A 186 11.13 -147.06 REMARK 500 3 PRO A 199 46.40 -77.89 REMARK 500 3 THR A 283 -23.06 -141.05 REMARK 500 4 ASP A 181 -45.81 -142.67 REMARK 500 4 ARG A 186 9.19 -151.45 REMARK 500 4 ASP A 276 -167.98 -162.69 REMARK 500 4 GLN A 290 177.79 57.42 REMARK 500 5 ASP A 181 -53.63 -130.97 REMARK 500 5 SER A 185 11.04 -149.75 REMARK 500 5 SER A 187 12.72 -147.73 REMARK 500 5 PRO A 199 44.56 -77.61 REMARK 500 6 SER A 177 152.30 59.84 REMARK 500 6 ARG A 178 -53.53 -146.10 REMARK 500 6 PRO A 199 44.71 -76.91 REMARK 500 6 THR A 283 -21.66 -140.54 REMARK 500 7 ARG A 178 -38.24 -138.33 REMARK 500 7 SER A 185 -0.79 -147.18 REMARK 500 7 PRO A 199 45.92 -78.37 REMARK 500 7 THR A 283 -17.45 -142.49 REMARK 500 8 ASP A 181 -53.25 -138.49 REMARK 500 8 PRO A 199 44.20 -78.60 REMARK 500 8 ASN A 271 53.31 -116.67 REMARK 500 8 THR A 283 -14.65 -140.60 REMARK 500 9 SER A 187 12.40 -147.20 REMARK 500 9 PRO A 199 49.59 -77.01 REMARK 500 9 ASP A 276 -166.12 -160.58 REMARK 500 10 SER A 185 -0.41 -140.96 REMARK 500 10 ARG A 186 10.49 -148.18 REMARK 500 10 PRO A 199 45.83 -78.23 REMARK 500 10 PRO A 217 85.45 -66.63 REMARK 500 10 GLN A 290 19.77 55.20 REMARK 500 11 ARG A 178 -39.06 -136.18 REMARK 500 11 SER A 185 -0.73 -143.90 REMARK 500 11 SER A 190 13.85 56.14 REMARK 500 11 PRO A 199 46.03 -77.74 REMARK 500 12 ARG A 186 -1.78 -144.15 REMARK 500 12 PRO A 199 48.56 -76.93 REMARK 500 12 ASP A 276 -167.39 -161.03 REMARK 500 13 SER A 187 17.88 -155.12 REMARK 500 13 PRO A 199 49.89 -76.74 REMARK 500 13 ASN A 271 53.42 -117.31 REMARK 500 14 SER A 187 12.38 -147.07 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MQL RELATED DB: PDB REMARK 900 RELATED ID: 2MQM RELATED DB: PDB REMARK 900 RELATED ID: 2MQN RELATED DB: PDB REMARK 900 RELATED ID: 2MQO RELATED DB: PDB REMARK 900 RELATED ID: 2MQQ RELATED DB: PDB REMARK 900 RELATED ID: 25042 RELATED DB: BMRB DBREF 2MQP A 174 291 UNP F2Z3R2 F2Z3R2_RAT 174 291 DBREF 2MQP B 1 6 PDB 2MQP 2MQP 1 6 SEQRES 1 A 118 GLN LYS ILE SER ARG PRO GLY ASP SER ASP ASP SER ARG SEQRES 2 A 118 SER VAL ASN SER VAL LEU LEU PHE THR ILE LEU ASN PRO SEQRES 3 A 118 ILE TYR SER ILE THR THR ASP VAL LEU TYR THR ILE CYS SEQRES 4 A 118 ASN PRO CYS GLY PRO VAL GLN ARG ILE VAL ILE PHE ARG SEQRES 5 A 118 LYS ASN GLY VAL GLN ALA MET VAL GLU PHE ASP SER VAL SEQRES 6 A 118 GLN SER ALA GLN ARG ALA LYS ALA SER LEU ASN GLY ALA SEQRES 7 A 118 ASP ILE TYR SER GLY CYS CYS THR LEU LYS ILE GLU TYR SEQRES 8 A 118 ALA LYS PRO THR ARG LEU ASN VAL PHE LYS ASN ASP GLN SEQRES 9 A 118 ASP THR TRP ASP TYR THR ASN PRO ASN LEU SER GLY GLN SEQRES 10 A 118 GLY SEQRES 1 B 6 A C A C A C HELIX 1 1 SER A 182 SER A 187 1 6 HELIX 2 2 THR A 204 ASN A 213 1 10 HELIX 3 3 PRO A 214 GLY A 216 5 3 HELIX 4 4 SER A 237 LEU A 248 1 12 HELIX 5 5 ASN A 284 GLN A 290 5 7 SHEET 1 A 5 LEU A 260 TYR A 264 0 SHEET 2 A 5 VAL A 191 ILE A 196 -1 N LEU A 193 O GLU A 263 SHEET 3 A 5 GLN A 230 PHE A 235 -1 O ALA A 231 N PHE A 194 SHEET 4 A 5 VAL A 218 PHE A 224 -1 N GLN A 219 O GLU A 234 SHEET 5 A 5 THR A 279 ASP A 281 -1 O TRP A 280 N ILE A 221 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1