HEADER DE NOVO PROTEIN 01-JUL-14 2MR6 TITLE SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN, NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR462 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGNED PROTEIN OR462; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTIFICIAL GENE; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET21_NESG KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.XU,L.NIVON,J.F.FEDERIZON,M.MAGLAQUI,H.JANJUA,L.MAO,R.XIAO, AUTHOR 2 G.KORNHABER,D.BAKER,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 2 14-JUN-23 2MR6 1 REMARK REVDAT 1 06-AUG-14 2MR6 0 JRNL AUTH X.XU,L.NIVON,J.F.FEDERIZON,M.MAGLAQUI,H.JANJUA,L.MAO,R.XIAO, JRNL AUTH 2 G.KORNHABER,D.BAKER,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN, JRNL TITL 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR462 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 BY RUNNING CYANA AND ASDP IN PARALLEL USING NOE-BASED REMARK 3 CONSTRAINTS AND PHI,PSI, AND CHI1 DIHEDRAL ANGLE CONSTRAINTS REMARK 3 FROM TALOSN. CONSENSUS PEAK ASSIGNMENTS WERE SELECTED AND USED REMARK 3 IN ITERATIVE REFINEMENT WITH CYANA. THE 20 CONFORMERS OUT OF 100 REMARK 3 WITH THE LOWEST TARGET FUNCTION WERE FURTHER REFINED BY REMARK 3 SIMULATED ANNEALING IN EXPLICIT WATER BATH USING THE PROGRAM CNS REMARK 3 WITH PARAM19 FORCE FIELD NMR ENSEMBLE INFORMATION REMARK 4 REMARK 4 2MR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000103954. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM OR462, 90% H2O/10% REMARK 210 D2O,PH7.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 SIMULTANEOUS CALI,CARO, AND N REMARK 210 NOESY; CCH-TOCSY; 3D HN(CA)CO; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D CT- REMARK 210 1H-13C HSQC ALIPHATIC; 2D CT-1H- REMARK 210 13C HSQC AROMATIC; GFT(4,3D) REMARK 210 HCCHCOSY ALI; GFT(4,3D) HCCHCOSY REMARK 210 CARO; 2D CT-1H-13C HSQC REMARK 210 ALIPHATIC 28MS; 2D CT-1H-13C REMARK 210 HSCQ ALIPHATIC 42MS; 2D CR-1H- REMARK 210 13C HSQC ALIPHATIC 56MS REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, XEASY, REMARK 210 TOPSPIN, VNMRJ, TALOSN, AS-DP REMARK 210 1.0, CARA 1.8.4, PSVS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 26 120.37 -173.84 REMARK 500 1 ASN A 111 -168.36 -166.62 REMARK 500 1 GLU A 130 -69.29 -160.40 REMARK 500 3 ASP A 62 42.76 -94.58 REMARK 500 3 SER A 128 99.49 -67.44 REMARK 500 3 GLU A 130 -72.08 -99.22 REMARK 500 4 ASP A 36 33.71 -97.26 REMARK 500 4 LEU A 129 -67.50 -131.89 REMARK 500 4 HIS A 131 32.01 -156.63 REMARK 500 4 HIS A 135 -52.13 -148.74 REMARK 500 5 GLN A 87 56.36 -91.19 REMARK 500 5 HIS A 135 -57.69 -121.90 REMARK 500 6 ASP A 36 38.90 -92.00 REMARK 500 6 ASP A 62 36.78 -85.78 REMARK 500 7 ASP A 26 107.96 -170.09 REMARK 500 7 ASN A 111 -163.26 -168.80 REMARK 500 7 SER A 128 -68.11 -122.67 REMARK 500 7 HIS A 132 82.86 47.88 REMARK 500 7 HIS A 135 132.30 64.81 REMARK 500 8 ASP A 62 58.12 -93.67 REMARK 500 9 ASP A 36 50.07 -95.67 REMARK 500 9 SER A 128 89.30 -69.97 REMARK 500 9 HIS A 131 92.10 -66.32 REMARK 500 9 HIS A 132 -91.10 55.46 REMARK 500 9 HIS A 133 118.81 -165.28 REMARK 500 10 ASP A 26 101.82 -162.06 REMARK 500 10 ASP A 36 38.26 -97.34 REMARK 500 10 ASP A 62 47.16 -89.01 REMARK 500 10 ASP A 88 96.91 -68.72 REMARK 500 10 SER A 128 -73.09 -117.16 REMARK 500 11 LEU A 129 167.81 65.98 REMARK 500 11 HIS A 131 86.72 -63.41 REMARK 500 12 ASP A 62 46.04 -89.92 REMARK 500 12 GLN A 87 42.01 -93.60 REMARK 500 12 LEU A 129 -65.01 -96.75 REMARK 500 12 HIS A 134 -70.35 -150.83 REMARK 500 13 ASP A 36 51.00 -111.44 REMARK 500 13 ASP A 62 44.82 -154.91 REMARK 500 13 HIS A 134 -175.90 64.64 REMARK 500 13 HIS A 135 -178.33 69.26 REMARK 500 14 ASP A 26 119.05 -162.26 REMARK 500 14 ASP A 36 37.80 -92.80 REMARK 500 14 ASP A 62 37.88 -98.67 REMARK 500 14 HIS A 133 88.87 -67.26 REMARK 500 15 ASP A 26 129.87 -170.26 REMARK 500 15 ASP A 36 41.87 -88.91 REMARK 500 15 ASN A 111 -162.90 -169.01 REMARK 500 15 GLU A 130 -67.56 -91.43 REMARK 500 15 HIS A 133 94.45 52.65 REMARK 500 15 HIS A 135 -41.00 -156.17 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25062 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-OR462 RELATED DB: TARGETTRACK DBREF 2MR6 A 1 136 PDB 2MR6 2MR6 1 136 SEQRES 1 A 136 MET GLY VAL VAL ILE LEU VAL LEU THR GLY ASP GLU ARG SEQRES 2 A 136 ILE ALA GLU GLU LEU ARG LYS GLU VAL GLN LYS HIS ASP SEQRES 3 A 136 PRO ASN VAL LYS THR VAL PRO THR LYS ASP LYS GLU LYS SEQRES 4 A 136 VAL LYS GLU GLU ILE GLU LYS ALA ARG LYS GLN GLY ARG SEQRES 5 A 136 PRO ILE VAL VAL PHE VAL ARG GLY GLY ASP ASP GLU ARG SEQRES 6 A 136 ALA LYS ASP ILE ALA GLU TYR ALA GLN LYS GLU GLY LEU SEQRES 7 A 136 ARG VAL ILE VAL ILE ILE VAL SER GLN ASP GLU GLU ALA SEQRES 8 A 136 LEU ARG LYS GLY TYR GLU ASP LYS LYS LYS LYS GLY TYR SEQRES 9 A 136 ASP VAL TYR THR SER ARG ASN GLU ASP GLU ALA LYS LYS SEQRES 10 A 136 LYS LEU LYS GLU ALA LEU GLU LYS SER GLY SER LEU GLU SEQRES 11 A 136 HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 11 ASP A 26 1 16 HELIX 2 2 LYS A 39 GLY A 51 1 13 HELIX 3 3 ASP A 62 GLU A 76 1 15 HELIX 4 4 ASP A 88 LYS A 101 1 14 HELIX 5 5 ASN A 111 GLY A 127 1 17 SHEET 1 A 5 LYS A 30 VAL A 32 0 SHEET 2 A 5 PRO A 53 ARG A 59 1 O PHE A 57 N VAL A 32 SHEET 3 A 5 VAL A 3 THR A 9 1 N THR A 9 O VAL A 58 SHEET 4 A 5 ARG A 79 VAL A 85 1 O ILE A 81 N LEU A 6 SHEET 5 A 5 ASP A 105 SER A 109 1 O ASP A 105 N VAL A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1