HEADER BIOSYNTHETIC PROTEIN 02-JUL-14 2MR8 TITLE HOLO STRUCTURE OF THE PEPTIDYL CARRIER PROTEIN DOMAIN 7 OF THE TITLE 2 TEICOPLANIN PRODUCING NON-RIBOSOMAL PEPTIDE SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-RIBOSOMAL PEPTIDE SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOPLANES TEICHOMYCETICUS; SOURCE 3 ORGANISM_TAXID: 1867; SOURCE 4 STRAIN: 1867; SOURCE 5 GENE: TCP12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PETGB1 KEYWDS NON-RIBOSOMAL PEPTIDE SYNTHETASE, PEPTIDYL CARRIER PROTEIN, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.HASLINGER,E.MAXIMOWITSCH,C.REDFIELD,M.J.CRYLE REVDAT 3 14-JUN-23 2MR8 1 REMARK SEQADV REVDAT 2 08-APR-15 2MR8 1 JRNL REVDAT 1 28-JAN-15 2MR8 0 JRNL AUTH K.HASLINGER,C.REDFIELD,M.J.CRYLE JRNL TITL STRUCTURE OF THE TERMINAL PCP DOMAIN OF THE NON-RIBOSOMAL JRNL TITL 2 PEPTIDE SYNTHETASE IN TEICOPLANIN BIOSYNTHESIS. JRNL REF PROTEINS V. 83 711 2015 JRNL REFN ISSN 0887-3585 JRNL PMID 25586301 JRNL DOI 10.1002/PROT.24758 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR ANALYSIS 2.2, YASARA 1.1, YASARA 1.1, REMARK 3 YASARA 1.1, YASARA 1.1 REMARK 3 AUTHORS : CCPN (CCPNMR ANALYSIS), YASARA BIOSCIENCES GMBH REMARK 3 (YASARA), CORNILESCU, DELAGLIO AND BAX (YASARA), REMARK 3 YASARA BIOSCIENCES GMBH (YASARA), CORNILESCU, REMARK 3 DELAGLIO AND BAX (YASARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000103956. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 350-500 UM [U-100% 13C; U-100% REMARK 210 15N] PCP7T, 50 MM TRIS, 95% H2O/ REMARK 210 5% D2O; 500 UM PCP7T, 50 MM TRIS, REMARK 210 95% H2O/5% D2O; 500 UM PCP7T, REMARK 210 50 MM TRIS, 100% D2O; 350-500 UM REMARK 210 [U-100% 15N] PCP7T, 50 MM TRIS, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 2D 1H-1H NOESY; REMARK 210 3D 1H-13C NOESY; 2D DQF-COSY; 2D REMARK 210 1H-15N HSQC; 2D 1H-13C HSQC; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HN(CO) REMARK 210 CA; 3D HCCH-TOCSY; 3D HNCCCONH; REMARK 210 3D CBCANH; 2D 1H-1H TOCSY; 3D 1H- REMARK 210 15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : OMEGA REMARK 210 SPECTROMETER MANUFACTURER : OXFORD REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.2, YASARA 1.1, REMARK 210 NMRPIPE, CYANA, WHAT IF REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 15 SER A 40 CB SER A 40 OG -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 6 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 10 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 11 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 12 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 15 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 15 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 18 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 GLU A 8 -60.22 -96.70 REMARK 500 4 ALA A 2 -159.06 -147.89 REMARK 500 5 SER A 67 68.75 -154.06 REMARK 500 6 ALA A 6 165.06 66.01 REMARK 500 6 SER A 67 77.75 -150.79 REMARK 500 6 PRO A 87 43.83 -76.96 REMARK 500 8 LYS A 5 -95.00 -157.55 REMARK 500 8 ALA A 6 -53.84 -165.75 REMARK 500 8 SER A 67 73.55 -156.10 REMARK 500 11 ALA A 6 156.80 65.91 REMARK 500 11 GLU A 8 41.57 -92.55 REMARK 500 12 GLU A 8 -60.87 -97.18 REMARK 500 13 SER A 67 69.59 -154.43 REMARK 500 14 SER A 67 71.49 -150.69 REMARK 500 15 GLU A 8 -10.77 -170.85 REMARK 500 17 LYS A 5 -92.62 -116.13 REMARK 500 17 GLU A 8 -65.05 -102.06 REMARK 500 19 MET A 3 -29.58 65.21 REMARK 500 20 ALA A 6 148.17 62.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MR7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE APO STATE REMARK 900 RELATED ID: 25064 RELATED DB: BMRB REMARK 900 THE SAME PROTEIN IN THE APO STATE REMARK 900 RELATED ID: 25065 RELATED DB: BMRB DBREF 2MR8 A 4 81 UNP Q70AZ6 Q70AZ6_ACTTI 969 1046 SEQADV 2MR8 GLY A 1 UNP Q70AZ6 EXPRESSION TAG SEQADV 2MR8 ALA A 2 UNP Q70AZ6 EXPRESSION TAG SEQADV 2MR8 MET A 3 UNP Q70AZ6 EXPRESSION TAG SEQADV 2MR8 ALA A 82 UNP Q70AZ6 EXPRESSION TAG SEQADV 2MR8 SER A 83 UNP Q70AZ6 EXPRESSION TAG SEQADV 2MR8 TRP A 84 UNP Q70AZ6 EXPRESSION TAG SEQADV 2MR8 SER A 85 UNP Q70AZ6 EXPRESSION TAG SEQADV 2MR8 HIS A 86 UNP Q70AZ6 EXPRESSION TAG SEQADV 2MR8 PRO A 87 UNP Q70AZ6 EXPRESSION TAG SEQADV 2MR8 GLN A 88 UNP Q70AZ6 EXPRESSION TAG SEQADV 2MR8 PHE A 89 UNP Q70AZ6 EXPRESSION TAG SEQADV 2MR8 GLU A 90 UNP Q70AZ6 EXPRESSION TAG SEQADV 2MR8 LYS A 91 UNP Q70AZ6 EXPRESSION TAG SEQRES 1 A 91 GLY ALA MET ALA LYS ALA PRO GLU SER ALA THR GLU LYS SEQRES 2 A 91 VAL LEU CYS ALA LEU TYR ALA GLU ILE LEU GLY VAL GLU SEQRES 3 A 91 ARG VAL GLY VAL ASP ASP ALA PHE HIS ASP LEU GLY GLY SEQRES 4 A 91 SER SER ALA LEU ALA MET ARG LEU ILE ALA ARG ILE ARG SEQRES 5 A 91 GLU GLU LEU GLY VAL ASP LEU PRO ILE ARG GLN LEU PHE SEQRES 6 A 91 SER SER PRO THR PRO ALA GLY VAL ALA ARG ALA LEU ALA SEQRES 7 A 91 ALA LYS SER ALA SER TRP SER HIS PRO GLN PHE GLU LYS HELIX 1 1 SER A 9 GLY A 24 1 16 HELIX 2 2 SER A 40 GLY A 56 1 17 HELIX 3 3 PRO A 60 SER A 67 1 8 HELIX 4 4 THR A 69 ALA A 79 1 11 HELIX 5 5 LYS A 80 ALA A 82 5 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1