HEADER TRANSFERASE 09-JUL-14 2MRJ TITLE STRUCTURE OF FYN PROTEIN SH2 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE FYN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 149-248; COMPND 5 SYNONYM: PROTO-ONCOGENE SYN, PROTO-ONCOGENE C-FYN, SRC-LIKE KINASE, COMPND 6 SLK, P59-FYN; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FYN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS FYN KINASE, SRC KINASE, SH2 DOMAIN, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR R.HUCULECI,L.BUTS,T.LENAERTS,N.VAN NULAND REVDAT 6 15-MAY-24 2MRJ 1 REMARK REVDAT 5 14-JUN-23 2MRJ 1 SEQADV REVDAT 4 14-DEC-16 2MRJ 1 JRNL REVDAT 3 26-OCT-16 2MRJ 1 JRNL REVDAT 2 27-APR-16 2MRJ 1 SEQADV SEQRES REVDAT 1 15-JUL-15 2MRJ 0 JRNL AUTH R.HUCULECI,E.CILIA,A.LYCZEK,L.BUTS,K.HOUBEN,M.A.SEELIGER, JRNL AUTH 2 N.VAN NULAND,T.LENAERTS JRNL TITL DYNAMICALLY COUPLED RESIDUES WITHIN THE SH2 DOMAIN OF FYN JRNL TITL 2 ARE KEY TO UNLOCKING ITS ACTIVITY. JRNL REF STRUCTURE V. 24 1947 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27692963 JRNL DOI 10.1016/J.STR.2016.08.016 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RECOORD WATER REFINEMENT PROTOCOL REMARK 4 REMARK 4 2MRJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000103966. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.50 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 FYNSH2 BOUND, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCACB; 3D HBHA(CO)NH; REMARK 210 3D H(CCO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : VARIAN NMR SYSTEMS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR, TALOS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-18 REMARK 465 RES C SSSEQI REMARK 465 SER A 137 REMARK 465 SER A 138 REMARK 465 GLY A 139 REMARK 465 LEU A 140 REMARK 465 VAL A 141 REMARK 465 PRO A 142 REMARK 465 ARG A 143 REMARK 465 GLY A 144 REMARK 465 SER A 145 REMARK 465 HIS A 146 REMARK 465 MET A 147 REMARK 465 GLU A 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 153 OE2 GLU A 177 1.57 REMARK 500 OD1 ASP A 191 HG CYS A 239 1.60 REMARK 500 HH12 ARG A 170 OD1 ASP A 191 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 PRO A 245 N PRO A 245 CA -0.112 REMARK 500 2 PRO A 245 N PRO A 245 CA -0.103 REMARK 500 4 PRO A 245 N PRO A 245 CA -0.119 REMARK 500 5 PRO A 245 N PRO A 245 CA -0.107 REMARK 500 17 PRO A 245 N PRO A 245 CA -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 18 ALA A 159 N - CA - CB ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 150 140.91 -38.41 REMARK 500 1 ARG A 170 136.30 -38.32 REMARK 500 1 ASP A 194 -2.11 70.07 REMARK 500 1 ASP A 198 106.37 -171.08 REMARK 500 1 ALA A 219 80.42 -161.83 REMARK 500 2 TYR A 150 142.11 -39.99 REMARK 500 2 TYR A 185 -168.55 -160.81 REMARK 500 2 ASP A 198 138.61 173.61 REMARK 500 2 HIS A 199 166.77 176.29 REMARK 500 3 TYR A 150 142.00 -37.75 REMARK 500 3 ASP A 198 116.92 -176.31 REMARK 500 4 TYR A 150 141.66 -39.27 REMARK 500 4 ASP A 198 113.81 179.92 REMARK 500 4 HIS A 199 168.04 177.44 REMARK 500 4 HIS A 247 135.08 -31.09 REMARK 500 5 TYR A 150 142.17 -37.02 REMARK 500 5 ASP A 198 112.61 -168.16 REMARK 500 5 HIS A 199 157.40 179.60 REMARK 500 5 LEU A 242 61.58 -100.88 REMARK 500 6 TYR A 150 141.50 -38.58 REMARK 500 6 ASP A 194 -2.70 71.75 REMARK 500 6 ASP A 198 113.38 -172.14 REMARK 500 6 HIS A 199 168.17 178.31 REMARK 500 7 TYR A 150 142.24 -38.24 REMARK 500 7 ASP A 194 -2.56 69.89 REMARK 500 7 ASP A 198 100.09 179.91 REMARK 500 8 TYR A 150 141.72 -38.88 REMARK 500 8 ASP A 198 139.19 179.72 REMARK 500 8 HIS A 199 164.44 165.67 REMARK 500 8 ALA A 219 73.66 -165.31 REMARK 500 9 TYR A 150 141.20 -38.26 REMARK 500 9 SER A 165 -73.23 -74.79 REMARK 500 9 ASP A 198 18.97 -151.96 REMARK 500 9 LEU A 242 61.94 -101.04 REMARK 500 10 TYR A 150 141.59 -39.92 REMARK 500 10 MET A 195 -57.50 -120.51 REMARK 500 10 ASP A 198 143.14 169.36 REMARK 500 10 HIS A 199 169.57 161.42 REMARK 500 11 TYR A 150 141.97 -39.12 REMARK 500 11 ASP A 198 107.71 -172.22 REMARK 500 11 LEU A 242 60.71 -103.36 REMARK 500 12 TYR A 150 142.16 -38.20 REMARK 500 12 ASP A 198 101.77 -178.84 REMARK 500 12 CYS A 246 113.14 -35.56 REMARK 500 13 TYR A 150 141.78 -37.88 REMARK 500 13 ASP A 198 107.15 176.36 REMARK 500 14 TYR A 150 141.32 -36.75 REMARK 500 14 ASP A 194 -1.31 77.42 REMARK 500 14 ASP A 198 108.35 -174.14 REMARK 500 15 TYR A 150 142.64 -38.88 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 176 0.09 SIDE CHAIN REMARK 500 7 ARG A 234 0.08 SIDE CHAIN REMARK 500 9 ARG A 206 0.07 SIDE CHAIN REMARK 500 11 ARG A 234 0.07 SIDE CHAIN REMARK 500 18 ARG A 156 0.11 SIDE CHAIN REMARK 500 18 ARG A 161 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17368 RELATED DB: BMRB REMARK 900 FYN SH2 FREE STATE REMARK 900 RELATED ID: 17369 RELATED DB: BMRB REMARK 900 FYN SH2 IN COMPLEX WITH THE HIGH AFFINITY PHOSPHORILATED PEPTIDE REMARK 900 RELATED ID: 2MQI RELATED DB: PDB REMARK 900 FYN SH2 FREE STATE REMARK 900 RELATED ID: 25081 RELATED DB: BMRB DBREF 2MRJ A 148 248 UNP P06241 FYN_HUMAN 148 248 SEQADV 2MRJ SER A 137 UNP P06241 EXPRESSION TAG SEQADV 2MRJ SER A 138 UNP P06241 EXPRESSION TAG SEQADV 2MRJ GLY A 139 UNP P06241 EXPRESSION TAG SEQADV 2MRJ LEU A 140 UNP P06241 EXPRESSION TAG SEQADV 2MRJ VAL A 141 UNP P06241 EXPRESSION TAG SEQADV 2MRJ PRO A 142 UNP P06241 EXPRESSION TAG SEQADV 2MRJ ARG A 143 UNP P06241 EXPRESSION TAG SEQADV 2MRJ GLY A 144 UNP P06241 EXPRESSION TAG SEQADV 2MRJ SER A 145 UNP P06241 EXPRESSION TAG SEQADV 2MRJ HIS A 146 UNP P06241 EXPRESSION TAG SEQADV 2MRJ MET A 147 UNP P06241 EXPRESSION TAG SEQRES 1 A 112 SER SER GLY LEU VAL PRO ARG GLY SER HIS MET GLU TRP SEQRES 2 A 112 TYR PHE GLY LYS LEU GLY ARG LYS ASP ALA GLU ARG GLN SEQRES 3 A 112 LEU LEU SER PHE GLY ASN PRO ARG GLY THR PHE LEU ILE SEQRES 4 A 112 ARG GLU SER GLU THR THR LYS GLY ALA TYR SER LEU SER SEQRES 5 A 112 ILE ARG ASP TRP ASP ASP MET LYS GLY ASP HIS VAL LYS SEQRES 6 A 112 HIS TYR LYS ILE ARG LYS LEU ASP ASN GLY GLY TYR TYR SEQRES 7 A 112 ILE THR THR ARG ALA GLN PHE GLU THR LEU GLN GLN LEU SEQRES 8 A 112 VAL GLN HIS TYR SER GLU ARG ALA ALA GLY LEU CYS CYS SEQRES 9 A 112 ARG LEU VAL VAL PRO CYS HIS LYS HELIX 1 1 ARG A 156 GLY A 167 1 12 HELIX 2 2 THR A 223 SER A 232 1 10 SHEET 1 A 3 PHE A 173 GLU A 177 0 SHEET 2 A 3 TYR A 185 ILE A 189 -1 O SER A 186 N ARG A 176 SHEET 3 A 3 LYS A 201 LYS A 204 -1 O LYS A 201 N ILE A 189 SHEET 1 B 3 ARG A 206 LYS A 207 0 SHEET 2 B 3 TYR A 213 THR A 216 -1 O TYR A 214 N ARG A 206 SHEET 3 B 3 ALA A 219 PHE A 221 -1 O PHE A 221 N TYR A 213 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1