HEADER MEMBRANE PROTEIN 12-JUL-14 2MRM TITLE SOLUTION STRUCTURE OF THE RHODANESE DOMAIN OF YGAP FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-107; COMPND 5 SYNONYM: YGAP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: BU34_15760, CF57_07085, CF61_07785; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: P28 KEYWDS RHODANESE DOMAIN, YGAP, E. COLI, INTEGRAL MEMBRANE PROTEIN, MEMBRANE KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR W.WANG,P.ZHOU,C.TIAN,F.WU REVDAT 2 01-MAY-24 2MRM 1 REMARK SEQADV REVDAT 1 08-OCT-14 2MRM 0 JRNL AUTH W.WANG,P.ZHOU,Y.HE,L.YU,Y.XIONG,C.TIAN,F.WU JRNL TITL FAST CONFORMATIONAL EXCHANGE BETWEEN THE SULFUR-FREE AND JRNL TITL 2 PERSULFIDE-BOUND RHODANESE DOMAIN OF E. COLI YGAP JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 452 817 2014 JRNL REFN ISSN 0006-291X JRNL PMID 25204500 JRNL DOI 10.1016/J.BBRC.2014.09.002 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MRM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000103969. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM CHLORIDE-1, 20 MM REMARK 210 TRIS-2, 0.5 MM [U-100% 13C; U- REMARK 210 100% 15N] YGAP-3, 90% H2O/10% REMARK 210 D2O; 20 MM TRIS-4, 50 MM SODIUM REMARK 210 CHLORIDE-5, 0.5 MM [U-100% 13C; REMARK 210 U-100% 15N] YGAP-6, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HBHA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D C(CO)NH; 3D REMARK 210 1H-15N NOESY; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 20 HE ARG A 56 1.21 REMARK 500 HD1 HIS A 34 H ILE A 35 1.27 REMARK 500 O PRO A 42 H VAL A 45 1.53 REMARK 500 O ALA A 27 H LEU A 31 1.55 REMARK 500 H HIS A 34 O ALA A 104 1.56 REMARK 500 O THR A 70 H ALA A 74 1.57 REMARK 500 O LEU A 77 H ALA A 81 1.57 REMARK 500 O ILE A 35 H GLU A 37 1.57 REMARK 500 O LEU A 14 H ARG A 17 1.57 REMARK 500 O SER A 7 H ASP A 10 1.57 REMARK 500 O LEU A 21 H ASP A 39 1.57 REMARK 500 O LEU A 51 H ALA A 53 1.58 REMARK 500 OD2 ASP A 23 HH21 ARG A 25 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 35.19 -153.07 REMARK 500 1 PRO A 8 -16.98 -42.06 REMARK 500 1 ALA A 19 151.48 -31.29 REMARK 500 1 ARG A 25 -145.54 -154.73 REMARK 500 1 PRO A 36 66.38 -49.37 REMARK 500 1 GLU A 37 27.83 -179.46 REMARK 500 1 PRO A 52 67.05 -51.87 REMARK 500 1 HIS A 57 -167.07 166.17 REMARK 500 1 ALA A 66 54.08 -142.65 REMARK 500 1 ALA A 82 -179.47 42.98 REMARK 500 1 PRO A 83 15.75 -62.49 REMARK 500 1 ALA A 84 -152.48 -53.10 REMARK 500 1 ASP A 91 -50.26 82.22 REMARK 500 2 PRO A 8 -16.82 -38.23 REMARK 500 2 ALA A 19 144.33 -27.07 REMARK 500 2 ARG A 25 -136.64 -160.81 REMARK 500 2 GLU A 33 137.02 -172.83 REMARK 500 2 PRO A 36 19.46 -54.33 REMARK 500 2 SER A 49 -77.59 -82.99 REMARK 500 2 PRO A 52 78.12 -69.33 REMARK 500 2 HIS A 57 -169.04 -170.14 REMARK 500 2 GLN A 65 -39.89 -34.91 REMARK 500 2 ALA A 82 -179.85 52.63 REMARK 500 2 PRO A 83 7.51 -60.54 REMARK 500 2 ALA A 84 169.39 -46.48 REMARK 500 2 ASP A 91 -47.44 68.35 REMARK 500 2 PRO A 102 152.09 -45.62 REMARK 500 3 PRO A 8 -17.71 -39.46 REMARK 500 3 ARG A 25 -141.95 -173.91 REMARK 500 3 PRO A 36 19.49 -54.44 REMARK 500 3 LEU A 43 -29.79 -39.79 REMARK 500 3 HIS A 57 -164.06 177.97 REMARK 500 3 GLN A 65 -41.81 -28.23 REMARK 500 3 ALA A 66 -60.45 -126.27 REMARK 500 3 ALA A 82 -179.27 44.95 REMARK 500 3 PRO A 83 26.40 -60.23 REMARK 500 3 ALA A 84 -162.68 -69.11 REMARK 500 3 ASP A 91 -40.21 69.34 REMARK 500 3 ALA A 99 -33.89 -39.26 REMARK 500 4 LEU A 3 143.11 -38.55 REMARK 500 4 PRO A 8 -18.10 -40.06 REMARK 500 4 ILE A 24 -73.36 -112.89 REMARK 500 4 ARG A 25 -143.34 20.57 REMARK 500 4 PRO A 36 24.07 -76.70 REMARK 500 4 GLU A 37 35.57 -146.18 REMARK 500 4 ALA A 41 95.57 -160.25 REMARK 500 4 SER A 49 -78.28 -72.80 REMARK 500 4 PRO A 52 73.66 -58.10 REMARK 500 4 HIS A 57 -163.75 169.51 REMARK 500 4 GLN A 65 -56.24 -21.66 REMARK 500 REMARK 500 THIS ENTRY HAS 148 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25085 RELATED DB: BMRB DBREF 2MRM A 1 107 UNP W8T678 W8T678_ECOLX 1 107 SEQADV 2MRM MET A -6 UNP W8T678 EXPRESSION TAG SEQADV 2MRM HIS A -5 UNP W8T678 EXPRESSION TAG SEQADV 2MRM HIS A -4 UNP W8T678 EXPRESSION TAG SEQADV 2MRM HIS A -3 UNP W8T678 EXPRESSION TAG SEQADV 2MRM HIS A -2 UNP W8T678 EXPRESSION TAG SEQADV 2MRM HIS A -1 UNP W8T678 EXPRESSION TAG SEQADV 2MRM HIS A 0 UNP W8T678 EXPRESSION TAG SEQRES 1 A 114 MET HIS HIS HIS HIS HIS HIS MET ALA LEU THR THR ILE SEQRES 2 A 114 SER PRO HIS ASP ALA GLN GLU LEU ILE ALA ARG GLY ALA SEQRES 3 A 114 LYS LEU ILE ASP ILE ARG ASP ALA ASP GLU TYR LEU ARG SEQRES 4 A 114 GLU HIS ILE PRO GLU ALA ASP LEU ALA PRO LEU SER VAL SEQRES 5 A 114 LEU GLU GLN SER GLY LEU PRO ALA LYS LEU ARG HIS GLU SEQRES 6 A 114 GLN ILE ILE PHE HIS CYS GLN ALA GLY LYS ARG THR SER SEQRES 7 A 114 ASN ASN ALA ASP LYS LEU ALA ALA ILE ALA ALA PRO ALA SEQRES 8 A 114 GLU ILE PHE LEU LEU GLU ASP GLY ILE ASP GLY TRP LYS SEQRES 9 A 114 ARG ALA GLY LEU PRO VAL ALA VAL ASN LYS HELIX 1 1 SER A 7 ALA A 16 1 10 HELIX 2 2 ASP A 26 GLU A 33 1 8 HELIX 3 3 PRO A 42 SER A 49 1 8 HELIX 4 4 PRO A 52 HIS A 57 5 6 HELIX 5 5 ARG A 69 ALA A 81 1 13 HELIX 6 6 GLY A 92 ALA A 99 1 8 SHEET 1 A 5 THR A 4 ILE A 6 0 SHEET 2 A 5 GLU A 85 LEU A 89 1 O LEU A 88 N ILE A 6 SHEET 3 A 5 GLN A 59 HIS A 63 1 N ILE A 60 O PHE A 87 SHEET 4 A 5 LYS A 20 ASP A 23 1 N LYS A 20 O ILE A 61 SHEET 5 A 5 ASP A 39 LEU A 40 1 O ASP A 39 N LEU A 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1