HEADER COPPER BINDING PROTEIN 17-JUL-14 2MRY TITLE NMR SOLUTION STRUCTURE OF COPPER BINDING PROTEIN IN THE APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 373153; SOURCE 4 STRAIN: D39; SOURCE 5 GENE: SPD0634, SPD_0634; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PHIS KEYWDS COPPER BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR Y.FU,H.WU,K.BRUCE,D.GIEDROC REVDAT 4 15-MAY-24 2MRY 1 REMARK REVDAT 3 14-JUN-23 2MRY 1 REMARK SEQADV REVDAT 2 12-JUL-17 2MRY 1 JRNL REVDAT 1 29-JUL-15 2MRY 0 JRNL AUTH Y.FU,K.E.BRUCE,H.WU,D.P.GIEDROC JRNL TITL THE S2 CU(I) SITE IN CUPA FROM STREPTOCOCCUS PNEUMONIAE IS JRNL TITL 2 REQUIRED FOR CELLULAR COPPER RESISTANCE. JRNL REF METALLOMICS V. 8 61 2016 JRNL REFN ESSN 1756-591X JRNL PMID 26346139 JRNL DOI 10.1039/C5MT00221D REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, X-PLOR NIH 2.36 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000103980. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4-0.6 MM [U-98% 13C; U-98% REMARK 210 15N] COPPER BINDING PROTEIN, 10 % REMARK 210 [U-99% 2H] D2O, 50 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 5 MM EDTA, 5 MM TCEP, 10 UM DSS, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D CBCANH; 3D HNCO; 3D C(CO)NH; REMARK 210 3D H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D HNHA; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.3.0, SPARKY REMARK 210 2.6, NMRPIPE 8.1, PSVS 1.5, PINE REMARK 210 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 35 -154.28 -93.42 REMARK 500 1 PRO A 71 40.10 -81.42 REMARK 500 1 MET A 113 -90.85 -137.97 REMARK 500 1 MET A 116 -177.51 66.17 REMARK 500 2 LYS A 35 -148.68 -93.20 REMARK 500 2 PRO A 71 38.63 -79.23 REMARK 500 2 MET A 115 -92.60 -126.94 REMARK 500 3 LYS A 35 -150.28 -95.34 REMARK 500 3 PRO A 71 39.66 -81.87 REMARK 500 3 MET A 116 73.22 61.75 REMARK 500 4 LYS A 35 -153.07 -97.10 REMARK 500 4 PRO A 71 38.48 -80.18 REMARK 500 4 MET A 113 -107.06 -139.30 REMARK 500 4 ASN A 114 -160.13 59.05 REMARK 500 5 MET A 28 -74.36 -124.95 REMARK 500 5 LYS A 35 -151.14 -94.89 REMARK 500 5 PRO A 71 39.63 -80.73 REMARK 500 6 LYS A 35 -156.17 -95.41 REMARK 500 6 PRO A 71 39.53 -80.97 REMARK 500 6 MET A 113 -31.53 -141.86 REMARK 500 6 ASN A 114 -159.78 -156.14 REMARK 500 7 LYS A 35 -149.82 -95.39 REMARK 500 7 PRO A 71 39.13 -80.52 REMARK 500 7 MET A 113 -39.26 -164.30 REMARK 500 8 LYS A 35 -157.07 -91.03 REMARK 500 8 PRO A 61 93.44 -67.25 REMARK 500 8 PRO A 71 40.43 -81.13 REMARK 500 9 ALA A 27 -91.23 63.47 REMARK 500 9 LYS A 35 -149.88 -97.51 REMARK 500 9 PRO A 71 39.54 -79.60 REMARK 500 10 LYS A 35 -149.79 -94.75 REMARK 500 10 PRO A 71 39.25 -80.62 REMARK 500 11 LYS A 35 -150.72 -94.97 REMARK 500 11 PRO A 71 38.57 -79.75 REMARK 500 11 MET A 113 -96.98 -122.69 REMARK 500 11 MET A 116 174.18 69.50 REMARK 500 11 HIS A 117 103.74 -164.90 REMARK 500 12 LYS A 35 -154.50 -94.89 REMARK 500 12 PRO A 71 39.39 -81.20 REMARK 500 13 MET A 28 -51.32 -132.11 REMARK 500 13 LYS A 35 -151.32 -92.63 REMARK 500 13 PRO A 71 40.29 -81.67 REMARK 500 13 MET A 115 48.86 -85.35 REMARK 500 14 LYS A 35 -156.08 -93.03 REMARK 500 14 PRO A 71 39.47 -80.49 REMARK 500 14 ASN A 114 -170.63 68.33 REMARK 500 14 MET A 115 65.04 -102.21 REMARK 500 15 LYS A 35 -151.62 -96.63 REMARK 500 15 PRO A 71 39.33 -80.24 REMARK 500 15 ASN A 114 -48.24 -156.16 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25098 RELATED DB: BMRB DBREF 2MRY A 29 123 UNP Q04LG8 Q04LG8_STRP2 29 123 SEQADV 2MRY GLY A 26 UNP Q04LG8 EXPRESSION TAG SEQADV 2MRY ALA A 27 UNP Q04LG8 EXPRESSION TAG SEQADV 2MRY MET A 28 UNP Q04LG8 EXPRESSION TAG SEQRES 1 A 98 GLY ALA MET GLY GLN LYS ALA GLN GLN LYS ASN GLY TYR SEQRES 2 A 98 GLN GLU ILE ARG VAL GLU VAL MET GLY GLY TYR THR PRO SEQRES 3 A 98 GLU LEU ILE VAL LEU LYS LYS SER VAL PRO ALA ARG ILE SEQRES 4 A 98 VAL PHE ASP ARG LYS ASP PRO SER PRO CYS LEU ASP GLN SEQRES 5 A 98 ILE VAL PHE PRO ASP PHE GLY VAL HIS ALA ASN LEU PRO SEQRES 6 A 98 MET GLY GLU GLU TYR VAL VAL GLU ILE THR PRO GLU GLN SEQRES 7 A 98 ALA GLY GLU PHE SER PHE ALA CYS GLY MET ASN MET MET SEQRES 8 A 98 HIS GLY LYS MET ILE VAL GLU HELIX 1 1 SER A 72 LEU A 75 5 4 SHEET 1 A 4 GLN A 30 LYS A 31 0 SHEET 2 A 4 LEU A 53 LYS A 57 1 O LEU A 53 N GLN A 30 SHEET 3 A 4 LYS A 119 GLU A 123 1 O ILE A 121 N ILE A 54 SHEET 4 A 4 GLY A 105 SER A 108 -1 N PHE A 107 O MET A 120 SHEET 1 B 4 GLN A 33 GLN A 34 0 SHEET 2 B 4 GLN A 39 VAL A 45 -1 O GLU A 40 N GLN A 33 SHEET 3 B 4 ALA A 62 ARG A 68 1 O VAL A 65 N VAL A 43 SHEET 4 B 4 GLU A 94 ILE A 99 -1 O ILE A 99 N ALA A 62 SHEET 1 C 2 GLN A 77 VAL A 79 0 SHEET 2 C 2 HIS A 86 ASN A 88 -1 O ALA A 87 N ILE A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1