HEADER ISOMERASE 22-JUL-14 2MS4 TITLE CYCLOPHILIN A COMPLEXED WITH A FRAGMENT OF CRK-II COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIASE A, CYCLOPHILIN A, CYCLOSPORIN A-BINDING PROTEIN, COMPND 5 ROTAMASE A, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A, N-TERMINALLY COMPND 6 PROCESSED; COMPND 7 EC: 5.2.1.8; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PEPTIDE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIA, CYPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES KEYWDS CYCLOPHILIN A, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.JANKOWSKI,T.SALEH,P.ROSSI,C.KALODIMOS REVDAT 4 03-FEB-16 2MS4 1 JRNL REVDAT 3 30-DEC-15 2MS4 1 JRNL REVDAT 2 16-DEC-15 2MS4 1 JRNL REVDAT 1 09-SEP-15 2MS4 0 JRNL AUTH T.SALEH,W.JANKOWSKI,G.SRIRAM,P.ROSSI,S.SHAH,K.B.LEE, JRNL AUTH 2 L.A.CRUZ,A.J.RODRIGUEZ,R.B.BIRGE,C.G.KALODIMOS JRNL TITL CYCLOPHILIN A PROMOTES CELL MIGRATION VIA THE ABL-CRK JRNL TITL 2 SIGNALING PATHWAY. JRNL REF NAT.CHEM.BIOL. V. 12 117 2016 JRNL REFN ISSN 1552-4450 JRNL PMID 26656091 JRNL DOI 10.1038/NCHEMBIO.1981 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A.T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MS4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-14. REMARK 100 THE RCSB ID CODE IS RCSB103985. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN_1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCA; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 16 108.79 -56.18 REMARK 500 1 TYR A 48 89.84 -63.86 REMARK 500 1 PHE A 53 78.77 -69.02 REMARK 500 1 PHE A 60 -76.91 -149.57 REMARK 500 1 THR A 73 -82.36 -143.77 REMARK 500 1 GLN A 111 -173.68 61.16 REMARK 500 1 PRO B 218 94.18 -67.33 REMARK 500 1 GLN B 223 86.95 63.62 REMARK 500 2 TYR A 48 91.23 -64.73 REMARK 500 2 PHE A 60 -73.24 -148.47 REMARK 500 2 MET A 61 140.46 -171.69 REMARK 500 2 ASP A 66 -73.38 -122.60 REMARK 500 2 THR A 73 -74.91 -149.51 REMARK 500 2 ASN A 87 -157.18 -163.22 REMARK 500 2 PHE A 88 34.10 -142.43 REMARK 500 2 HIS A 92 56.10 -91.19 REMARK 500 2 GLN A 111 171.73 69.08 REMARK 500 2 CYS A 161 -166.55 -127.74 REMARK 500 2 GLN A 163 106.60 -46.40 REMARK 500 2 PRO B 218 95.15 -52.96 REMARK 500 3 PRO A 16 104.88 -53.52 REMARK 500 3 TYR A 48 86.95 -60.95 REMARK 500 3 PHE A 60 -73.68 -145.24 REMARK 500 3 PHE A 67 -70.96 -73.36 REMARK 500 3 ARG A 69 93.64 52.99 REMARK 500 3 THR A 73 -64.55 -143.70 REMARK 500 3 GLN A 111 165.23 69.76 REMARK 500 3 LYS A 125 -158.40 -145.22 REMARK 500 3 PHE A 129 -33.32 -138.27 REMARK 500 3 PRO B 218 99.18 -65.33 REMARK 500 4 PRO A 16 107.97 -56.84 REMARK 500 4 TYR A 48 92.63 -66.36 REMARK 500 4 PHE A 60 -76.38 -145.09 REMARK 500 4 ARG A 69 82.89 52.98 REMARK 500 4 ASN A 71 91.41 -64.76 REMARK 500 4 LYS A 76 170.58 -53.77 REMARK 500 4 ASN A 87 134.79 -170.14 REMARK 500 4 GLN A 111 -175.74 59.15 REMARK 500 4 LYS A 125 -164.24 -72.84 REMARK 500 5 PRO A 16 106.31 -59.89 REMARK 500 5 TYR A 48 86.09 -60.07 REMARK 500 5 PHE A 60 -76.87 -150.34 REMARK 500 5 ASN A 71 84.84 -68.61 REMARK 500 5 THR A 73 -68.01 -125.00 REMARK 500 5 GLN A 111 168.86 66.03 REMARK 500 5 LYS A 125 -164.32 -73.65 REMARK 500 5 GLN A 163 107.08 -46.74 REMARK 500 5 PRO B 218 92.03 -68.54 REMARK 500 6 HIS A 54 -43.09 -149.36 REMARK 500 6 PHE A 60 -69.26 -148.01 REMARK 500 REMARK 500 THIS ENTRY HAS 197 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25104 RELATED DB: BMRB DBREF 2MS4 A 1 165 UNP P62937 PPIA_HUMAN 1 165 DBREF 2MS4 B 216 224 PDB 2MS4 2MS4 216 224 SEQRES 1 A 165 MET VAL ASN PRO THR VAL PHE PHE ASP ILE ALA VAL ASP SEQRES 2 A 165 GLY GLU PRO LEU GLY ARG VAL SER PHE GLU LEU PHE ALA SEQRES 3 A 165 ASP LYS VAL PRO LYS THR ALA GLU ASN PHE ARG ALA LEU SEQRES 4 A 165 SER THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER CYS SEQRES 5 A 165 PHE HIS ARG ILE ILE PRO GLY PHE MET CYS GLN GLY GLY SEQRES 6 A 165 ASP PHE THR ARG HIS ASN GLY THR GLY GLY LYS SER ILE SEQRES 7 A 165 TYR GLY GLU LYS PHE GLU ASP GLU ASN PHE ILE LEU LYS SEQRES 8 A 165 HIS THR GLY PRO GLY ILE LEU SER MET ALA ASN ALA GLY SEQRES 9 A 165 PRO ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR ALA SEQRES 10 A 165 LYS THR GLU TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY SEQRES 11 A 165 LYS VAL LYS GLU GLY MET ASN ILE VAL GLU ALA MET GLU SEQRES 12 A 165 ARG PHE GLY SER ARG ASN GLY LYS THR SER LYS LYS ILE SEQRES 13 A 165 THR ILE ALA ASP CYS GLY GLN LEU GLU SEQRES 1 B 9 PRO GLU PRO GLY PRO TYR ALA GLN PRO HELIX 1 1 VAL A 29 GLY A 42 1 14 HELIX 2 2 THR A 119 ASP A 123 5 5 HELIX 3 3 GLY A 135 ARG A 144 1 10 SHEET 1 A 9 THR A 5 VAL A 12 0 SHEET 2 A 9 GLU A 15 LEU A 24 -1 O PHE A 22 N VAL A 6 SHEET 3 A 9 GLY A 130 GLU A 134 -1 O LYS A 131 N GLU A 23 SHEET 4 A 9 ILE A 97 SER A 99 -1 N LEU A 98 O GLY A 130 SHEET 5 A 9 PHE A 112 CYS A 115 -1 O PHE A 113 N SER A 99 SHEET 6 A 9 MET A 61 GLY A 65 -1 N CYS A 62 O ILE A 114 SHEET 7 A 9 CYS A 52 ILE A 57 -1 N ILE A 57 O MET A 61 SHEET 8 A 9 ILE A 156 CYS A 161 -1 O ILE A 156 N PHE A 53 SHEET 9 A 9 THR A 5 VAL A 12 -1 N ALA A 11 O THR A 157 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1