HEADER TRANSCRIPTION 04-AUG-14 2MSK TITLE SOLUTION STRUCTURE AND CHEMICAL SHIFT ASSIGNMENTS FOR BEF3 ACTIVATED TITLE 2 RECEIVER DOMAIN OF NITROGEN REGULATORY PROTEIN C (NTRC) AT 35C COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN REGULATION PROTEIN NR(I); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-124; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 990282; SOURCE 4 STRAIN: ATCC 68169 / UK-1; SOURCE 5 GENE: GLNG NTRC STM4005; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-7 KEYWDS TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR M.W.CLARKSON,F.PONTIGGIA,J.VILLALI,D.KERN REVDAT 2 14-JUN-23 2MSK 1 REMARK REVDAT 1 01-JUL-15 2MSK 0 JRNL AUTH F.PONTIGGIA,D.V.PACHOV,M.W.CLARKSON,J.VILLALI,M.F.HAGAN, JRNL AUTH 2 V.S.PANDE,D.KERN JRNL TITL FREE ENERGY LANDSCAPE OF ACTIVATION IN A SIGNALLING PROTEIN JRNL TITL 2 AT ATOMIC RESOLUTION. JRNL REF NAT COMMUN V. 6 7284 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26073309 JRNL DOI 10.1038/NCOMMS8284 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MSK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000103997. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.75 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-100% 13C; U-100% 15N] REMARK 210 RECEIVER DOMAIN OF NTRC, 50 MM REMARK 210 SODIUM PHOSPHATE, 4.4 MM REMARK 210 BERYLLIUM CHLORIDE, 29 MM SODIUM REMARK 210 FLUORIDE, 7.2 MM MAGNESIUM REMARK 210 CHLORIDE, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D C(CO)NH; 3D HCCH-TOCSY; REMARK 210 3D HCCH3-TOCSY; 2D (HB)CB(CGCD) REMARK 210 HD; 2D (HB)CB(CGCDCE)HE; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : AGILENT; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, NMRPIPE, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 3 166.65 63.27 REMARK 500 1 ASP A 12 123.98 -179.62 REMARK 500 1 PHE A 33 -81.13 -142.90 REMARK 500 1 GLU A 34 -63.86 171.67 REMARK 500 1 VAL A 50 132.41 -179.97 REMARK 500 1 ARG A 56 66.59 -163.11 REMARK 500 1 MET A 60 -78.11 -146.17 REMARK 500 1 ASP A 61 -175.90 178.25 REMARK 500 1 HIS A 73 84.11 -161.90 REMARK 500 1 THR A 82 -176.04 -176.37 REMARK 500 1 PHE A 99 -60.27 -91.22 REMARK 500 1 LEU A 102 76.97 -112.62 REMARK 500 2 ARG A 3 141.27 -176.00 REMARK 500 2 ASP A 12 115.90 -162.18 REMARK 500 2 PHE A 33 -80.32 -128.82 REMARK 500 2 GLU A 34 -68.78 172.67 REMARK 500 2 PRO A 48 -170.84 -69.69 REMARK 500 2 VAL A 50 79.96 -150.96 REMARK 500 2 ARG A 56 64.89 -174.16 REMARK 500 2 MET A 60 -77.15 -146.18 REMARK 500 2 ASP A 61 -175.77 179.31 REMARK 500 2 HIS A 73 84.01 -161.91 REMARK 500 2 THR A 82 -172.51 -176.70 REMARK 500 2 ALA A 83 -167.14 -103.84 REMARK 500 2 LEU A 102 77.23 -112.46 REMARK 500 3 ASP A 12 117.50 -179.44 REMARK 500 3 PHE A 33 -79.57 -150.07 REMARK 500 3 GLU A 34 -67.56 174.08 REMARK 500 3 PRO A 48 -179.48 -69.78 REMARK 500 3 VAL A 50 80.33 -150.71 REMARK 500 3 ARG A 56 62.73 -174.61 REMARK 500 3 PRO A 58 78.07 -69.73 REMARK 500 3 MET A 60 -80.08 -158.88 REMARK 500 3 ASP A 61 -177.26 175.01 REMARK 500 3 HIS A 73 83.04 -159.64 REMARK 500 3 THR A 82 -172.28 -176.23 REMARK 500 3 ALA A 83 -167.95 -102.24 REMARK 500 3 LEU A 102 76.61 -112.60 REMARK 500 4 ARG A 3 163.87 63.17 REMARK 500 4 ASP A 12 106.60 -179.47 REMARK 500 4 PHE A 33 -79.90 -151.50 REMARK 500 4 GLU A 34 -60.49 172.05 REMARK 500 4 PRO A 48 -169.90 -69.78 REMARK 500 4 ARG A 56 62.78 -174.39 REMARK 500 4 PRO A 58 76.18 -69.81 REMARK 500 4 MET A 60 -80.53 -165.61 REMARK 500 4 ASP A 61 -176.34 175.92 REMARK 500 4 HIS A 73 84.90 -162.79 REMARK 500 4 THR A 82 -171.12 -176.27 REMARK 500 4 ALA A 83 -168.37 -106.78 REMARK 500 REMARK 500 THIS ENTRY HAS 341 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25124 RELATED DB: BMRB REMARK 900 RELATED ID: 2MSL RELATED DB: PDB DBREF 2MSK A 1 124 UNP F5ZY36 F5ZY36_SALTU 1 124 SEQRES 1 A 124 MET GLN ARG GLY ILE VAL TRP VAL VAL ASP ASP ASP SER SEQRES 2 A 124 SER ILE ARG TRP VAL LEU GLU ARG ALA LEU ALA GLY ALA SEQRES 3 A 124 GLY LEU THR CYS THR THR PHE GLU ASN GLY ASN GLU VAL SEQRES 4 A 124 LEU ALA ALA LEU ALA SER LYS THR PRO ASP VAL LEU LEU SEQRES 5 A 124 SER ASP ILE ARG MET PRO GLY MET ASP GLY LEU ALA LEU SEQRES 6 A 124 LEU LYS GLN ILE LYS GLN ARG HIS PRO MET LEU PRO VAL SEQRES 7 A 124 ILE ILE MET THR ALA HIS SER ASP LEU ASP ALA ALA VAL SEQRES 8 A 124 SER ALA TYR GLN GLN GLY ALA PHE ASP TYR LEU PRO LYS SEQRES 9 A 124 PRO PHE ASP ILE ASP GLU ALA VAL ALA LEU VAL GLU ARG SEQRES 10 A 124 ALA ILE SER HIS TYR GLN GLU HELIX 1 1 ASP A 12 GLY A 27 1 16 HELIX 2 2 ASN A 35 ALA A 44 1 10 HELIX 3 3 GLY A 62 ARG A 72 1 11 HELIX 4 4 ASP A 88 GLY A 97 1 10 HELIX 5 5 ASP A 107 SER A 120 1 14 HELIX 6 6 HIS A 121 GLN A 123 5 3 SHEET 1 A 2 ILE A 5 VAL A 8 0 SHEET 2 A 2 THR A 29 THR A 32 1 O THR A 31 N VAL A 8 SHEET 1 B 2 LEU A 51 ASP A 54 0 SHEET 2 B 2 VAL A 78 MET A 81 1 O ILE A 79 N LEU A 51 CISPEP 1 LYS A 104 PRO A 105 1 -0.07 CISPEP 2 LYS A 104 PRO A 105 2 -0.08 CISPEP 3 LYS A 104 PRO A 105 3 -0.11 CISPEP 4 LYS A 104 PRO A 105 4 -0.04 CISPEP 5 LYS A 104 PRO A 105 5 -0.13 CISPEP 6 LYS A 104 PRO A 105 6 -0.10 CISPEP 7 LYS A 104 PRO A 105 7 -0.13 CISPEP 8 LYS A 104 PRO A 105 8 0.00 CISPEP 9 LYS A 104 PRO A 105 9 -0.13 CISPEP 10 LYS A 104 PRO A 105 10 -0.09 CISPEP 11 LYS A 104 PRO A 105 11 0.00 CISPEP 12 LYS A 104 PRO A 105 12 -0.12 CISPEP 13 LYS A 104 PRO A 105 13 -0.15 CISPEP 14 LYS A 104 PRO A 105 14 -0.16 CISPEP 15 LYS A 104 PRO A 105 15 -0.03 CISPEP 16 LYS A 104 PRO A 105 16 -0.06 CISPEP 17 LYS A 104 PRO A 105 17 -0.16 CISPEP 18 LYS A 104 PRO A 105 18 -0.20 CISPEP 19 LYS A 104 PRO A 105 19 -0.11 CISPEP 20 LYS A 104 PRO A 105 20 -0.04 CISPEP 21 LYS A 104 PRO A 105 21 -0.16 CISPEP 22 LYS A 104 PRO A 105 22 -0.11 CISPEP 23 LYS A 104 PRO A 105 23 -0.13 CISPEP 24 LYS A 104 PRO A 105 24 -0.09 CISPEP 25 LYS A 104 PRO A 105 25 -0.17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1