data_2MSR # _entry.id 2MSR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MSR pdb_00002msr 10.2210/pdb2msr/pdb RCSB RCSB104003 ? ? BMRB 25130 ? ? WWPDB D_1000104003 ? ? # _pdbx_database_related.db_id 25130 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MSR _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-08-05 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cermakova, K.' 1 'Tesina, P.' 2 'Demeulemeester, J.' 3 'El Ashkar, S.' 4 'Mereau, H.' 5 'Schwaller, J.' 6 'Rezacova, P.' 7 'Veverka, V.' 8 'De Rijck, J.' 9 # _citation.id primary _citation.title ;Validation and Structural Characterization of the LEDGF/p75-MLL Interface as a New Target for the Treatment of MLL-Dependent Leukemia. ; _citation.journal_abbrev 'Cancer Res.' _citation.journal_volume 74 _citation.page_first 5139 _citation.page_last 5151 _citation.year 2014 _citation.journal_id_ASTM CNREA8 _citation.country US _citation.journal_id_ISSN 0008-5472 _citation.journal_id_CSD 0400 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25082813 _citation.pdbx_database_id_DOI 10.1158/0008-5472.CAN-13-3602 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cermakova, K.' 1 ? primary 'Tesina, P.' 2 ? primary 'Demeulemeester, J.' 3 ? primary 'El Ashkar, S.' 4 ? primary 'Mereau, H.' 5 ? primary 'Schwaller, J.' 6 ? primary 'Rezacova, P.' 7 ? primary 'Veverka, V.' 8 ? primary 'De Rijck, J.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone-lysine N-methyltransferase 2A' 2272.344 1 ? ? 'UNP residues 140-160' ? 2 polymer man 'PC4 and SFRS1-interacting protein' 10259.957 1 ? ? 'UNP residues 344-425' ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;Lysine N-methyltransferase 2A, ALL-1, CXXC-type zinc finger protein 7, Myeloid/lymphoid or mixed-lineage leukemia, Myeloid/lymphoid or mixed-lineage leukemia protein 1, Trithorax-like protein, Zinc finger protein HRX, MLL cleavage product N320, N-terminal cleavage product of 320 kDa, p320, MLL cleavage product C180, C-terminal cleavage product of 180 kDa, p180 ; 2 ;CLL-associated antigen KW-7, Dense fine speckles 70 kDa protein, DFS 70, Lens epithelium-derived growth factor, Transcriptional coactivator p75/p52 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GGSGEDEQFLGFGSDEEVRVR GGSGEDEQFLGFGSDEEVRVR A ? 2 'polypeptide(L)' no no ;SNAASRETSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTM LYNKFKNM ; ;SNAASRETSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTM LYNKFKNM ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 SER n 1 4 GLY n 1 5 GLU n 1 6 ASP n 1 7 GLU n 1 8 GLN n 1 9 PHE n 1 10 LEU n 1 11 GLY n 1 12 PHE n 1 13 GLY n 1 14 SER n 1 15 ASP n 1 16 GLU n 1 17 GLU n 1 18 VAL n 1 19 ARG n 1 20 VAL n 1 21 ARG n 2 1 SER n 2 2 ASN n 2 3 ALA n 2 4 ALA n 2 5 SER n 2 6 ARG n 2 7 GLU n 2 8 THR n 2 9 SER n 2 10 MET n 2 11 ASP n 2 12 SER n 2 13 ARG n 2 14 LEU n 2 15 GLN n 2 16 ARG n 2 17 ILE n 2 18 HIS n 2 19 ALA n 2 20 GLU n 2 21 ILE n 2 22 LYS n 2 23 ASN n 2 24 SER n 2 25 LEU n 2 26 LYS n 2 27 ILE n 2 28 ASP n 2 29 ASN n 2 30 LEU n 2 31 ASP n 2 32 VAL n 2 33 ASN n 2 34 ARG n 2 35 CYS n 2 36 ILE n 2 37 GLU n 2 38 ALA n 2 39 LEU n 2 40 ASP n 2 41 GLU n 2 42 LEU n 2 43 ALA n 2 44 SER n 2 45 LEU n 2 46 GLN n 2 47 VAL n 2 48 THR n 2 49 MET n 2 50 GLN n 2 51 GLN n 2 52 ALA n 2 53 GLN n 2 54 LYS n 2 55 HIS n 2 56 THR n 2 57 GLU n 2 58 MET n 2 59 ILE n 2 60 THR n 2 61 THR n 2 62 LEU n 2 63 LYS n 2 64 LYS n 2 65 ILE n 2 66 ARG n 2 67 ARG n 2 68 PHE n 2 69 LYS n 2 70 VAL n 2 71 SER n 2 72 GLN n 2 73 VAL n 2 74 ILE n 2 75 MET n 2 76 GLU n 2 77 LYS n 2 78 SER n 2 79 THR n 2 80 MET n 2 81 LEU n 2 82 TYR n 2 83 ASN n 2 84 LYS n 2 85 PHE n 2 86 LYS n 2 87 ASN n 2 88 MET n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'KMT2A, ALL1, CXXC7, HRX, HTRX, MLL, MLL1, TRX1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? pMCSG7 ? ? 2 1 sample ? ? ? human ? 'PSIP1, DFS70, LEDGF, PSIP2' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? pMCSG7 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP KMT2A_HUMAN Q03164 1 GGSGEDEQFLGFGSDEEVRVR 140 ? 2 UNP PSIP1_HUMAN O75475 2 ;RETSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKF KNM ; 344 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MSR A 1 ? 21 ? Q03164 140 ? 160 ? 140 160 2 2 2MSR B 6 ? 88 ? O75475 344 ? 426 ? 344 426 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 2MSR SER B 1 ? UNP O75475 ? ? 'expression tag' 339 1 2 2MSR ASN B 2 ? UNP O75475 ? ? 'expression tag' 340 2 2 2MSR ALA B 3 ? UNP O75475 ? ? 'expression tag' 341 3 2 2MSR ALA B 4 ? UNP O75475 ? ? 'expression tag' 342 4 2 2MSR SER B 5 ? UNP O75475 ? ? 'expression tag' 343 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D HNCACB' 1 4 1 '3D CBCA(CO)NH' 1 5 1 '3D HNCO' 1 6 1 '3D HCCH-TOCSY' 1 7 1 '3D 1H-13C NOESY' 1 8 1 '3D 1H-15N NOESY' 1 9 1 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 125 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.5 mM MLL1_140, 0.5 mM [U-13C; U-15N] IBD, 25 mM HEPES, 100 mM sodium chloride, 0.05 % beta-mercaptoethanol, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MSR _pdbx_nmr_refine.method 'torsion angle dynamics, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MSR _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MSR _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin ? 1 'Bruker Biospin' processing TopSpin ? 2 Goddard 'chemical shift assignment' Sparky ? 3 Goddard 'data analysis' Sparky ? 4 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 5 YASARA refinement YASARA ? 6 ? refinement CYANA ? 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MSR _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MSR _struct.title 'Solution structure of LEDGF/p75 IBD in complex with MLL1 peptide (140-160)' _struct.pdbx_model_details 'closest to the average, model2' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MSR _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'LEDGF/p75, MLL, Mixed Lineage Leukemia, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET B 10 ? LEU B 25 ? MET B 348 LEU B 363 1 ? 16 HELX_P HELX_P2 2 ASP B 31 ? LEU B 45 ? ASP B 369 LEU B 383 1 ? 15 HELX_P HELX_P3 3 THR B 48 ? HIS B 55 ? THR B 386 HIS B 393 1 ? 8 HELX_P HELX_P4 4 HIS B 55 ? ARG B 66 ? HIS B 393 ARG B 404 1 ? 12 HELX_P HELX_P5 5 SER B 71 ? MET B 88 ? SER B 409 MET B 426 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2MSR _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 140 140 GLY GLY A . n A 1 2 GLY 2 141 141 GLY GLY A . n A 1 3 SER 3 142 142 SER SER A . n A 1 4 GLY 4 143 143 GLY GLY A . n A 1 5 GLU 5 144 144 GLU GLU A . n A 1 6 ASP 6 145 145 ASP ASP A . n A 1 7 GLU 7 146 146 GLU GLU A . n A 1 8 GLN 8 147 147 GLN GLN A . n A 1 9 PHE 9 148 148 PHE PHE A . n A 1 10 LEU 10 149 149 LEU LEU A . n A 1 11 GLY 11 150 150 GLY GLY A . n A 1 12 PHE 12 151 151 PHE PHE A . n A 1 13 GLY 13 152 152 GLY GLY A . n A 1 14 SER 14 153 153 SER SER A . n A 1 15 ASP 15 154 154 ASP ASP A . n A 1 16 GLU 16 155 155 GLU GLU A . n A 1 17 GLU 17 156 156 GLU GLU A . n A 1 18 VAL 18 157 157 VAL VAL A . n A 1 19 ARG 19 158 158 ARG ARG A . n A 1 20 VAL 20 159 159 VAL VAL A . n A 1 21 ARG 21 160 160 ARG ARG A . n B 2 1 SER 1 339 339 SER SER B . n B 2 2 ASN 2 340 340 ASN ASN B . n B 2 3 ALA 3 341 341 ALA ALA B . n B 2 4 ALA 4 342 342 ALA ALA B . n B 2 5 SER 5 343 343 SER SER B . n B 2 6 ARG 6 344 344 ARG ARG B . n B 2 7 GLU 7 345 345 GLU GLU B . n B 2 8 THR 8 346 346 THR THR B . n B 2 9 SER 9 347 347 SER SER B . n B 2 10 MET 10 348 348 MET MET B . n B 2 11 ASP 11 349 349 ASP ASP B . n B 2 12 SER 12 350 350 SER SER B . n B 2 13 ARG 13 351 351 ARG ARG B . n B 2 14 LEU 14 352 352 LEU LEU B . n B 2 15 GLN 15 353 353 GLN GLN B . n B 2 16 ARG 16 354 354 ARG ARG B . n B 2 17 ILE 17 355 355 ILE ILE B . n B 2 18 HIS 18 356 356 HIS HIS B . n B 2 19 ALA 19 357 357 ALA ALA B . n B 2 20 GLU 20 358 358 GLU GLU B . n B 2 21 ILE 21 359 359 ILE ILE B . n B 2 22 LYS 22 360 360 LYS LYS B . n B 2 23 ASN 23 361 361 ASN ASN B . n B 2 24 SER 24 362 362 SER SER B . n B 2 25 LEU 25 363 363 LEU LEU B . n B 2 26 LYS 26 364 364 LYS LYS B . n B 2 27 ILE 27 365 365 ILE ILE B . n B 2 28 ASP 28 366 366 ASP ASP B . n B 2 29 ASN 29 367 367 ASN ASN B . n B 2 30 LEU 30 368 368 LEU LEU B . n B 2 31 ASP 31 369 369 ASP ASP B . n B 2 32 VAL 32 370 370 VAL VAL B . n B 2 33 ASN 33 371 371 ASN ASN B . n B 2 34 ARG 34 372 372 ARG ARG B . n B 2 35 CYS 35 373 373 CYS CYS B . n B 2 36 ILE 36 374 374 ILE ILE B . n B 2 37 GLU 37 375 375 GLU GLU B . n B 2 38 ALA 38 376 376 ALA ALA B . n B 2 39 LEU 39 377 377 LEU LEU B . n B 2 40 ASP 40 378 378 ASP ASP B . n B 2 41 GLU 41 379 379 GLU GLU B . n B 2 42 LEU 42 380 380 LEU LEU B . n B 2 43 ALA 43 381 381 ALA ALA B . n B 2 44 SER 44 382 382 SER SER B . n B 2 45 LEU 45 383 383 LEU LEU B . n B 2 46 GLN 46 384 384 GLN GLN B . n B 2 47 VAL 47 385 385 VAL VAL B . n B 2 48 THR 48 386 386 THR THR B . n B 2 49 MET 49 387 387 MET MET B . n B 2 50 GLN 50 388 388 GLN GLN B . n B 2 51 GLN 51 389 389 GLN GLN B . n B 2 52 ALA 52 390 390 ALA ALA B . n B 2 53 GLN 53 391 391 GLN GLN B . n B 2 54 LYS 54 392 392 LYS LYS B . n B 2 55 HIS 55 393 393 HIS HIS B . n B 2 56 THR 56 394 394 THR THR B . n B 2 57 GLU 57 395 395 GLU GLU B . n B 2 58 MET 58 396 396 MET MET B . n B 2 59 ILE 59 397 397 ILE ILE B . n B 2 60 THR 60 398 398 THR THR B . n B 2 61 THR 61 399 399 THR THR B . n B 2 62 LEU 62 400 400 LEU LEU B . n B 2 63 LYS 63 401 401 LYS LYS B . n B 2 64 LYS 64 402 402 LYS LYS B . n B 2 65 ILE 65 403 403 ILE ILE B . n B 2 66 ARG 66 404 404 ARG ARG B . n B 2 67 ARG 67 405 405 ARG ARG B . n B 2 68 PHE 68 406 406 PHE PHE B . n B 2 69 LYS 69 407 407 LYS LYS B . n B 2 70 VAL 70 408 408 VAL VAL B . n B 2 71 SER 71 409 409 SER SER B . n B 2 72 GLN 72 410 410 GLN GLN B . n B 2 73 VAL 73 411 411 VAL VAL B . n B 2 74 ILE 74 412 412 ILE ILE B . n B 2 75 MET 75 413 413 MET MET B . n B 2 76 GLU 76 414 414 GLU GLU B . n B 2 77 LYS 77 415 415 LYS LYS B . n B 2 78 SER 78 416 416 SER SER B . n B 2 79 THR 79 417 417 THR THR B . n B 2 80 MET 80 418 418 MET MET B . n B 2 81 LEU 81 419 419 LEU LEU B . n B 2 82 TYR 82 420 420 TYR TYR B . n B 2 83 ASN 83 421 421 ASN ASN B . n B 2 84 LYS 84 422 422 LYS LYS B . n B 2 85 PHE 85 423 423 PHE PHE B . n B 2 86 LYS 86 424 424 LYS LYS B . n B 2 87 ASN 87 425 425 ASN ASN B . n B 2 88 MET 88 426 426 MET MET B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 596 ? 1 MORE -7.6 ? 1 'SSA (A^2)' 8544 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-08-20 2 'Structure model' 1 1 2014-10-08 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id MLL1_140-160-1 0.5 ? mM ? 1 IBD-2 0.5 ? mM '[U-13C; U-15N]' 1 HEPES-3 25 ? mM ? 1 'sodium chloride-4' 100 ? mM ? 1 beta-mercaptoethanol-5 0.05 ? % ? 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 6 NE A ARG 158 ? ? CZ A ARG 158 ? ? NH1 A ARG 158 ? ? 123.65 120.30 3.35 0.50 N 2 13 NE B ARG 404 ? ? CZ B ARG 404 ? ? NH1 B ARG 404 ? ? 123.37 120.30 3.07 0.50 N 3 16 NE A ARG 158 ? ? CZ A ARG 158 ? ? NH1 A ARG 158 ? ? 124.50 120.30 4.20 0.50 N 4 16 NE A ARG 158 ? ? CZ A ARG 158 ? ? NH2 A ARG 158 ? ? 116.88 120.30 -3.42 0.50 N 5 20 NE A ARG 160 ? ? CZ A ARG 160 ? ? NH1 A ARG 160 ? ? 124.00 120.30 3.70 0.50 N 6 20 NE B ARG 372 ? ? CZ B ARG 372 ? ? NH1 B ARG 372 ? ? 123.34 120.30 3.04 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 144 ? ? -157.86 42.02 2 1 ASP A 154 ? ? -145.10 41.75 3 1 ALA B 341 ? ? -145.40 -77.78 4 1 SER B 343 ? ? -140.23 -3.72 5 1 ARG B 344 ? ? -142.39 -42.14 6 1 GLU B 345 ? ? 58.26 16.45 7 1 THR B 346 ? ? 53.97 -137.96 8 1 SER B 347 ? ? 53.60 -163.59 9 2 PHE A 148 ? ? 40.28 84.11 10 2 PHE A 151 ? ? 57.38 17.00 11 2 SER A 153 ? ? -77.96 -160.69 12 2 VAL A 159 ? ? 71.43 150.90 13 2 ASN B 340 ? ? -79.65 46.07 14 2 THR B 346 ? ? 49.51 0.71 15 2 ASP B 369 ? ? -108.83 71.60 16 2 HIS B 393 ? ? -106.04 43.70 17 3 LEU B 363 ? ? -107.30 41.71 18 3 ASN B 367 ? ? -158.39 62.22 19 3 HIS B 393 ? ? -93.77 42.72 20 4 SER A 142 ? ? 55.86 -135.21 21 4 ASP A 154 ? ? 64.49 -36.95 22 4 GLU A 155 ? ? 58.82 16.74 23 4 ARG A 158 ? ? -81.10 36.94 24 4 SER B 343 ? ? -72.01 35.77 25 5 GLU A 155 ? ? 58.63 11.36 26 5 VAL A 159 ? ? -70.87 23.74 27 5 ALA B 342 ? ? -148.36 -118.36 28 5 GLU B 345 ? ? 62.87 171.96 29 5 SER B 347 ? ? -64.69 94.07 30 5 ASN B 367 ? ? -164.22 111.98 31 5 HIS B 393 ? ? -90.79 42.94 32 6 SER A 142 ? ? -143.09 17.37 33 6 ASP A 145 ? ? -87.48 48.91 34 6 GLU A 146 ? ? 35.47 55.62 35 6 LEU A 149 ? ? 48.96 27.71 36 6 PHE A 151 ? ? -154.48 84.38 37 6 ASP A 154 ? ? -84.80 36.10 38 6 ALA B 341 ? ? 68.09 162.29 39 6 ARG B 344 ? ? -161.45 -30.93 40 6 LEU B 363 ? ? -99.37 35.41 41 6 ASN B 367 ? ? -158.68 76.58 42 6 HIS B 393 ? ? -109.02 42.28 43 7 SER A 142 ? ? 59.83 -153.52 44 7 GLU A 144 ? ? 63.59 -179.76 45 7 ASN B 340 ? ? 59.86 -154.73 46 7 LEU B 363 ? ? -104.92 41.75 47 7 ASP B 369 ? ? -101.62 77.88 48 7 HIS B 393 ? ? -94.76 44.67 49 8 PHE A 148 ? ? -107.98 73.94 50 8 SER A 153 ? ? -142.04 -31.60 51 8 ARG B 344 ? ? -155.44 72.04 52 8 SER B 347 ? ? -117.48 -103.25 53 8 ASN B 367 ? ? -164.91 105.88 54 8 HIS B 393 ? ? -101.80 43.72 55 9 SER A 153 ? ? -106.77 -63.28 56 9 GLU A 155 ? ? -157.44 29.13 57 9 ASN B 367 ? ? -152.55 86.92 58 9 ASP B 369 ? ? -114.69 70.25 59 9 HIS B 393 ? ? -100.14 41.58 60 10 SER A 142 ? ? 53.97 -125.33 61 10 LEU A 149 ? ? -68.18 82.10 62 10 GLU A 156 ? ? -82.56 48.45 63 10 ALA B 342 ? ? 61.30 -175.99 64 10 THR B 346 ? ? -128.06 -169.83 65 10 SER B 347 ? ? 62.51 -178.75 66 10 LEU B 363 ? ? -109.59 43.25 67 10 ASN B 367 ? ? -159.66 56.01 68 10 HIS B 393 ? ? -107.04 44.19 69 11 SER A 153 ? ? -84.70 43.27 70 11 ASN B 340 ? ? -123.34 -62.57 71 11 ALA B 341 ? ? -150.66 -59.37 72 11 HIS B 393 ? ? -95.04 42.97 73 12 SER A 142 ? ? -146.35 57.20 74 12 ASP A 154 ? ? -140.19 12.05 75 12 ASN B 340 ? ? 62.84 176.34 76 12 SER B 347 ? ? 63.35 176.69 77 12 LEU B 363 ? ? -93.21 57.84 78 12 HIS B 393 ? ? -96.37 44.02 79 13 GLU A 144 ? ? -158.46 -47.69 80 13 PHE A 148 ? ? 59.02 -154.54 81 13 ASP A 154 ? ? -83.23 49.61 82 13 HIS B 393 ? ? -90.51 45.08 83 14 GLN A 147 ? ? -102.37 75.51 84 14 GLU A 155 ? ? 53.75 -169.51 85 14 VAL A 159 ? ? -72.65 38.85 86 14 ALA B 341 ? ? -118.99 78.29 87 14 THR B 346 ? ? -76.41 28.72 88 14 ASN B 367 ? ? -156.55 84.91 89 15 GLN A 147 ? ? 73.52 152.68 90 15 ALA B 341 ? ? -154.36 37.67 91 15 SER B 343 ? ? -140.78 46.03 92 15 LEU B 363 ? ? -103.03 51.62 93 15 GLN B 384 ? ? -105.74 76.75 94 15 HIS B 393 ? ? -105.91 41.08 95 15 LYS B 407 ? ? -136.93 -37.71 96 16 GLU A 156 ? ? 62.66 152.83 97 16 ARG A 158 ? ? 58.39 84.06 98 16 VAL A 159 ? ? 32.97 70.84 99 16 ASN B 340 ? ? -134.52 -62.51 100 16 ALA B 341 ? ? -123.14 -50.15 101 16 SER B 343 ? ? -141.02 50.98 102 16 ASN B 367 ? ? -147.42 31.39 103 16 HIS B 393 ? ? -102.74 41.47 104 16 ARG B 405 ? ? -93.26 36.39 105 17 SER A 142 ? ? -152.46 34.05 106 17 GLN A 147 ? ? -72.36 24.07 107 17 PHE A 148 ? ? 49.56 79.96 108 17 HIS B 393 ? ? -107.66 41.73 109 18 PHE A 151 ? ? 67.68 -49.70 110 18 GLU A 156 ? ? 62.03 134.48 111 18 ALA B 341 ? ? -175.41 -48.86 112 18 ASN B 367 ? ? -153.98 63.37 113 18 HIS B 393 ? ? -98.89 42.73 114 19 LEU A 149 ? ? 20.60 80.38 115 19 VAL A 157 ? ? -140.75 10.03 116 19 ARG A 158 ? ? -106.97 67.08 117 19 SER B 343 ? ? -136.47 -48.04 118 19 HIS B 393 ? ? -91.62 40.08 119 20 SER A 142 ? ? 60.55 75.96 120 20 GLN A 147 ? ? 41.69 102.33 121 20 SER A 153 ? ? 61.74 179.21 122 20 VAL A 157 ? ? -130.27 -48.48 123 20 ARG A 158 ? ? 39.67 73.35 124 20 ASN B 340 ? ? 63.85 -174.53 125 20 SER B 343 ? ? -152.85 -55.35 126 20 ASN B 367 ? ? -152.29 64.51 127 20 HIS B 393 ? ? -103.26 40.52 #