HEADER LIGASE 14-AUG-14 2MT6 TITLE SOLUTION STRUCTURE OF THE HUMAN UBIQUITIN CONJUGATING ENZYME UBE2W COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 W; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: N-TERMINUS-CONJUGATING E2, UBIQUITIN CARRIER PROTEIN W, COMPND 5 UBIQUITIN-CONJUGATING ENZYME 16, UBC-16, UBIQUITIN-PROTEIN LIGASE W; COMPND 6 EC: 6.3.2.19; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2W, UBC16; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS UBIQUITIN, UBE2W, E2, UBIQUITIN CONJUGATING ENZYME, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.VITTAL,L.SHI,D.M.WENZEL,P.S.BRZOVIC,R.E.KLEVIT REVDAT 4 01-MAY-24 2MT6 1 REMARK REVDAT 3 14-JAN-15 2MT6 1 JRNL REVDAT 2 10-DEC-14 2MT6 1 JRNL REVDAT 1 26-NOV-14 2MT6 0 JRNL AUTH V.VITTAL,L.SHI,D.M.WENZEL,K.M.SCAGLIONE,E.D.DUNCAN,V.BASRUR, JRNL AUTH 2 K.S.ELENITOBA-JOHNSON,D.BAKER,H.L.PAULSON,P.S.BRZOVIC, JRNL AUTH 3 R.E.KLEVIT JRNL TITL INTRINSIC DISORDER DRIVES N-TERMINAL UBIQUITINATION BY JRNL TITL 2 UBE2W. JRNL REF NAT.CHEM.BIOL. V. 11 83 2015 JRNL REFN ISSN 1552-4450 JRNL PMID 25436519 JRNL DOI 10.1038/NCHEMBIO.1700 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CS-ROSETTA REMARK 3 AUTHORS : SHEN, VERNON, BAKER AND BAX REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MT6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000104015. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 200-400 UM [U-100% 13C; U-100% REMARK 210 15N] UBE2W, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 2D 1H- REMARK 210 15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CS-ROSETTA REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1600 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 7 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 3 ARG A 124 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 4 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 4 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 5 TYR A 49 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 5 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 6 ARG A 123 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 7 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 7 TYR A 49 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 7 ARG A 124 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 8 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 8 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 10 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 11 TYR A 49 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 11 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 11 ARG A 123 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 13 ARG A 123 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 14 ARG A 123 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 16 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 16 TYR A 49 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 16 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 17 TYR A 49 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 18 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 18 TYR A 49 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 18 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 19 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 18 81.93 -154.01 REMARK 500 1 TYR A 64 128.12 -27.72 REMARK 500 1 ASP A 67 115.45 -161.03 REMARK 500 1 THR A 96 -102.54 -122.39 REMARK 500 2 ASP A 18 87.84 -151.43 REMARK 500 2 THR A 96 -101.82 -121.79 REMARK 500 3 ASP A 18 77.97 -153.04 REMARK 500 3 GLU A 27 -179.79 -67.09 REMARK 500 3 LYS A 28 138.06 79.75 REMARK 500 3 GLU A 50 108.37 -48.90 REMARK 500 3 THR A 96 -101.95 -122.51 REMARK 500 4 ASP A 18 83.34 -150.70 REMARK 500 4 THR A 35 34.58 -57.62 REMARK 500 4 GLU A 50 107.02 -49.99 REMARK 500 4 THR A 96 -102.77 -122.76 REMARK 500 4 CYS A 119 107.14 -37.85 REMARK 500 4 LYS A 120 -60.42 -94.83 REMARK 500 4 THR A 142 78.94 -68.96 REMARK 500 5 THR A 96 -101.40 -121.61 REMARK 500 6 THR A 35 76.74 -66.73 REMARK 500 6 GLU A 50 108.90 -48.98 REMARK 500 6 PHE A 54 79.46 -119.35 REMARK 500 6 TYR A 64 127.32 -27.31 REMARK 500 6 THR A 96 -102.12 -122.51 REMARK 500 6 CYS A 119 107.32 -38.15 REMARK 500 6 ASN A 136 -35.97 -133.75 REMARK 500 6 THR A 142 77.56 -69.56 REMARK 500 7 ASP A 18 87.57 -154.33 REMARK 500 7 GLU A 50 108.79 -48.71 REMARK 500 7 THR A 96 -114.72 -132.00 REMARK 500 7 LYS A 140 73.49 -66.91 REMARK 500 8 ASN A 26 64.25 -104.72 REMARK 500 8 THR A 96 -76.72 -130.59 REMARK 500 9 ASP A 18 86.89 -151.07 REMARK 500 9 ASN A 26 127.37 -170.68 REMARK 500 9 THR A 35 97.77 -50.26 REMARK 500 9 TYR A 64 126.54 -28.14 REMARK 500 9 THR A 96 -101.38 -122.25 REMARK 500 9 SER A 118 70.90 -108.44 REMARK 500 9 GLU A 121 -147.04 -86.39 REMARK 500 10 ASP A 18 89.43 -154.25 REMARK 500 10 TYR A 64 126.66 -29.22 REMARK 500 10 THR A 96 -88.39 -131.79 REMARK 500 10 TRP A 144 19.55 58.64 REMARK 500 11 ASP A 18 81.73 -152.60 REMARK 500 11 ILE A 34 97.64 -69.24 REMARK 500 11 THR A 35 98.47 -48.98 REMARK 500 11 GLU A 50 109.54 -48.33 REMARK 500 11 PRO A 65 44.68 -104.54 REMARK 500 11 THR A 96 -102.39 -122.34 REMARK 500 REMARK 500 THIS ENTRY HAS 85 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25150 RELATED DB: BMRB DBREF 2MT6 A 1 151 UNP Q96B02 UBE2W_HUMAN 1 151 SEQRES 1 A 151 MET ALA SER MET GLN LYS ARG LEU GLN LYS GLU LEU LEU SEQRES 2 A 151 ALA LEU GLN ASN ASP PRO PRO PRO GLY MET THR LEU ASN SEQRES 3 A 151 GLU LYS SER VAL GLN ASN SER ILE THR GLN TRP ILE VAL SEQRES 4 A 151 ASP MET GLU GLY ALA PRO GLY THR LEU TYR GLU GLY GLU SEQRES 5 A 151 LYS PHE GLN LEU LEU PHE LYS PHE SER SER ARG TYR PRO SEQRES 6 A 151 PHE ASP SER PRO GLN VAL MET PHE THR GLY GLU ASN ILE SEQRES 7 A 151 PRO VAL HIS PRO HIS VAL TYR SER ASN GLY HIS ILE CYS SEQRES 8 A 151 LEU SER ILE LEU THR GLU ASP TRP SER PRO ALA LEU SER SEQRES 9 A 151 VAL GLN SER VAL CYS LEU SER ILE ILE SER MET LEU SER SEQRES 10 A 151 SER CYS LYS GLU LYS ARG ARG PRO PRO ASP ASN SER PHE SEQRES 11 A 151 TYR VAL ARG THR CYS ASN LYS ASN PRO LYS LYS THR LYS SEQRES 12 A 151 TRP TRP TYR HIS ASP ASP THR CYS HELIX 1 1 SER A 3 ASP A 18 1 16 HELIX 2 2 LEU A 92 THR A 96 5 5 HELIX 3 3 SER A 104 SER A 118 1 15 HELIX 4 4 ASP A 127 THR A 134 1 8 HELIX 5 5 CYS A 135 ASN A 138 5 4 SHEET 1 A 4 MET A 23 LYS A 28 0 SHEET 2 A 4 GLN A 36 GLU A 42 -1 O ILE A 38 N ASN A 26 SHEET 3 A 4 LYS A 53 LYS A 59 -1 O PHE A 54 N MET A 41 SHEET 4 A 4 GLN A 70 THR A 74 -1 O MET A 72 N LEU A 57 CISPEP 1 TYR A 64 PRO A 65 1 3.93 CISPEP 2 TYR A 64 PRO A 65 2 3.54 CISPEP 3 TYR A 64 PRO A 65 3 2.88 CISPEP 4 TYR A 64 PRO A 65 4 1.05 CISPEP 5 TYR A 64 PRO A 65 5 3.31 CISPEP 6 TYR A 64 PRO A 65 6 4.03 CISPEP 7 TYR A 64 PRO A 65 7 0.90 CISPEP 8 TYR A 64 PRO A 65 8 5.51 CISPEP 9 TYR A 64 PRO A 65 9 3.19 CISPEP 10 TYR A 64 PRO A 65 10 3.32 CISPEP 11 TYR A 64 PRO A 65 11 1.82 CISPEP 12 TYR A 64 PRO A 65 12 3.18 CISPEP 13 TYR A 64 PRO A 65 13 2.60 CISPEP 14 TYR A 64 PRO A 65 14 2.35 CISPEP 15 TYR A 64 PRO A 65 15 0.06 CISPEP 16 TYR A 64 PRO A 65 16 4.82 CISPEP 17 TYR A 64 PRO A 65 17 5.29 CISPEP 18 TYR A 64 PRO A 65 18 4.06 CISPEP 19 TYR A 64 PRO A 65 19 3.09 CISPEP 20 TYR A 64 PRO A 65 20 -3.74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1