HEADER PROTEIN BINDING 16-AUG-14 2MTC TITLE STRUCTURE OF DECORIN BINDING PROTEIN A FROM STRAIN N40 OF BORRELIA TITLE 2 BURGDORFERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECORIN-BINDING PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 29-194; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIA BURGDORFERI; SOURCE 3 ORGANISM_TAXID: 521007; SOURCE 4 STRAIN: N40; SOURCE 5 GENE: BBUN40_A24, DBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHUE KEYWDS ADHESIN, GLYCOSAMINOGLYCAN-BINDING PROTEIN, LIPOPROTEIN, PROTEIN KEYWDS 2 BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.WANG,A.MORGAN REVDAT 3 14-JUN-23 2MTC 1 REMARK REVDAT 2 29-APR-15 2MTC 1 JRNL REVDAT 1 25-MAR-15 2MTC 0 JRNL AUTH A.M.MORGAN,X.WANG JRNL TITL STRUCTURAL MECHANISMS UNDERLYING SEQUENCE-DEPENDENT JRNL TITL 2 VARIATIONS IN GAG AFFINITIES OF DECORIN BINDING PROTEIN A, A JRNL TITL 3 BORRELIA BURGDORFERI ADHESIN. JRNL REF BIOCHEM.J. V. 467 439 2015 JRNL REFN ISSN 0264-6021 JRNL PMID 25695518 JRNL DOI 10.1042/BJ20141201 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000104020. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 DBPA, 50 MM SODIUM PHOSPHATE, REMARK 210 150 MM SODIUM CHLORIDE, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D C(CO)NH; 3D REMARK 210 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 98 H GLU A 102 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 62 101.99 -49.29 REMARK 500 1 ALA A 64 -9.09 -58.79 REMARK 500 1 ASP A 68 -88.32 51.17 REMARK 500 1 THR A 71 73.35 -172.30 REMARK 500 1 VAL A 75 -98.97 -63.05 REMARK 500 1 THR A 104 -101.31 37.32 REMARK 500 1 LYS A 105 -30.87 -171.32 REMARK 500 1 LEU A 106 -34.22 -159.32 REMARK 500 1 THR A 109 43.81 -79.38 REMARK 500 1 VAL A 134 148.60 57.75 REMARK 500 1 MET A 137 37.15 -170.13 REMARK 500 1 PRO A 149 -85.79 -47.49 REMARK 500 1 THR A 150 -52.14 -166.52 REMARK 500 1 THR A 151 56.20 175.29 REMARK 500 2 ASN A 62 96.86 -60.78 REMARK 500 2 ALA A 64 -9.55 -53.16 REMARK 500 2 ASP A 68 21.13 42.08 REMARK 500 2 THR A 71 103.31 54.73 REMARK 500 2 LYS A 74 110.00 56.36 REMARK 500 2 SER A 76 88.94 -52.02 REMARK 500 2 THR A 104 -102.06 38.16 REMARK 500 2 LYS A 105 -54.38 -165.61 REMARK 500 2 LEU A 106 -37.74 -144.92 REMARK 500 2 THR A 109 42.54 -79.19 REMARK 500 2 VAL A 134 12.82 -170.89 REMARK 500 2 LEU A 135 165.26 57.21 REMARK 500 2 THR A 138 -17.77 -48.72 REMARK 500 2 GLN A 147 -62.78 -94.67 REMARK 500 2 THR A 150 83.58 -56.65 REMARK 500 2 THR A 151 82.85 33.61 REMARK 500 2 THR A 152 -166.03 -107.84 REMARK 500 2 TYR A 175 -16.66 -47.74 REMARK 500 2 LEU A 178 -71.48 -65.13 REMARK 500 3 ASN A 62 90.87 -61.89 REMARK 500 3 ASP A 68 117.43 56.42 REMARK 500 3 GLU A 70 91.22 -66.88 REMARK 500 3 THR A 71 113.46 -165.04 REMARK 500 3 SER A 73 -165.22 56.98 REMARK 500 3 SER A 76 87.90 -45.88 REMARK 500 3 THR A 104 -103.88 40.53 REMARK 500 3 LYS A 105 -39.49 -166.34 REMARK 500 3 LEU A 106 -24.97 -162.48 REMARK 500 3 THR A 109 44.33 -79.17 REMARK 500 3 VAL A 125 -9.42 -57.22 REMARK 500 3 VAL A 134 122.84 58.95 REMARK 500 3 MET A 137 14.34 -155.90 REMARK 500 3 PRO A 149 94.74 -66.00 REMARK 500 3 THR A 150 -85.23 17.91 REMARK 500 3 THR A 151 64.88 -163.07 REMARK 500 3 THR A 152 -169.54 -79.78 REMARK 500 REMARK 500 THIS ENTRY HAS 150 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25156 RELATED DB: BMRB REMARK 900 RELATED ID: 2MTD RELATED DB: PDB DBREF 2MTC A 29 194 UNP C6C2E4 C6C2E4_BORBN 29 194 SEQRES 1 A 166 GLY LEU LYS GLY GLU THR LYS ILE ILE LEU GLU ARG SER SEQRES 2 A 166 ALA LYS ASP ILE THR ASP GLU ILE ASN LYS ILE LYS LYS SEQRES 3 A 166 ASP ALA ALA ASP ASN ASN VAL ASN PHE ALA ALA PHE THR SEQRES 4 A 166 ASP SER GLU THR GLY SER LYS VAL SER GLU ASN SER PHE SEQRES 5 A 166 ILE LEU GLU ALA LYS VAL ARG ALA THR THR VAL ALA GLU SEQRES 6 A 166 LYS PHE VAL THR ALA ILE GLU GLY GLU ALA THR LYS LEU SEQRES 7 A 166 LYS LYS THR GLY SER SER GLY GLU PHE SER ALA MET TYR SEQRES 8 A 166 ASN MET MET LEU GLU VAL SER GLY PRO LEU GLU GLU LEU SEQRES 9 A 166 GLY VAL LEU ARG MET THR LYS THR VAL THR ASP ALA ALA SEQRES 10 A 166 GLU GLN HIS PRO THR THR THR ALA GLU GLY ILE LEU GLU SEQRES 11 A 166 ILE ALA LYS ILE MET LYS THR LYS LEU GLN ARG VAL HIS SEQRES 12 A 166 THR LYS ASN TYR CYS ALA LEU GLU LYS LYS LYS ASN PRO SEQRES 13 A 166 ASN PHE THR ASP GLU LYS CYS LYS ASN ASN HELIX 1 1 LYS A 31 LYS A 35 5 5 HELIX 2 2 ILE A 36 ASN A 59 1 24 HELIX 3 3 ASN A 62 THR A 67 5 6 HELIX 4 4 ASN A 78 ALA A 103 1 26 HELIX 5 5 GLY A 113 GLY A 133 1 21 HELIX 6 6 MET A 137 HIS A 148 1 12 HELIX 7 7 THR A 152 LYS A 181 1 30 SSBOND 1 CYS A 176 CYS A 191 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1