HEADER PROTEIN BINDING 16-AUG-14 2MTD TITLE STRCUCTURE OF DECORIN BINDING PROTEIN A FROM STRAIN PBR OF BORRELIA TITLE 2 GARINII COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECORIN BINDING PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 55-218; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIA GARINII; SOURCE 3 ORGANISM_TAXID: 498743; SOURCE 4 STRAIN: PBR; SOURCE 5 GENE: BGAPBR_A0025, DBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHUE KEYWDS ADHESIN, GLYCOSAMINOGLYCAN-BINDING PROTEIN, LIPOPROTEIN, PROTEIN KEYWDS 2 BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.WANG,A.MORGAN REVDAT 3 14-JUN-23 2MTD 1 REMARK REVDAT 2 29-APR-15 2MTD 1 JRNL REVDAT 1 25-MAR-15 2MTD 0 JRNL AUTH A.M.MORGAN,X.WANG JRNL TITL STRUCTURAL MECHANISMS UNDERLYING SEQUENCE-DEPENDENT JRNL TITL 2 VARIATIONS IN GAG AFFINITIES OF DECORIN BINDING PROTEIN A, A JRNL TITL 3 BORRELIA BURGDORFERI ADHESIN. JRNL REF BIOCHEM.J. V. 467 439 2015 JRNL REFN ISSN 0264-6021 JRNL PMID 25695518 JRNL DOI 10.1042/BJ20141201 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MTD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000104021. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 PBR, 50 MM SODIUM PHOSPHATE, 150 REMARK 210 MM SODIUM CHLORIDE, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D C(CO)NH; 3D REMARK 210 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 58 H THR A 62 1.52 REMARK 500 O PHE A 56 H PHE A 59 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 27 -33.42 -39.78 REMARK 500 1 ALA A 35 26.18 -76.32 REMARK 500 1 ASN A 43 -16.24 -49.36 REMARK 500 1 VAL A 54 151.77 -46.65 REMARK 500 1 PHE A 59 -27.28 -38.02 REMARK 500 1 SER A 66 -8.80 -53.65 REMARK 500 1 GLU A 70 29.70 37.36 REMARK 500 1 PRO A 72 41.16 -70.15 REMARK 500 1 GLU A 87 -15.94 -48.93 REMARK 500 1 GLN A 129 14.92 -60.66 REMARK 500 1 LYS A 130 -66.99 -91.90 REMARK 500 1 THR A 145 -4.31 -58.98 REMARK 500 1 THR A 184 150.57 59.00 REMARK 500 2 ARG A 30 -89.56 52.19 REMARK 500 2 SER A 34 -162.64 -77.14 REMARK 500 2 VAL A 54 154.83 -46.44 REMARK 500 2 THR A 62 -14.24 -48.93 REMARK 500 2 SER A 69 -87.00 -44.51 REMARK 500 2 GLU A 70 -61.34 -169.84 REMARK 500 2 LYS A 71 55.46 -168.76 REMARK 500 2 PRO A 72 44.94 -72.15 REMARK 500 2 LYS A 79 -76.02 -56.30 REMARK 500 2 LYS A 101 -73.68 -51.33 REMARK 500 2 MET A 116 -16.30 -45.99 REMARK 500 2 GLU A 124 -16.93 -45.83 REMARK 500 2 GLN A 129 11.61 -61.28 REMARK 500 2 LYS A 130 -66.86 -92.06 REMARK 500 2 ALA A 144 21.73 -68.42 REMARK 500 2 THR A 184 -158.19 -75.81 REMARK 500 3 GLU A 26 -18.17 -49.68 REMARK 500 3 ARG A 30 28.16 -76.57 REMARK 500 3 SER A 33 -157.83 56.40 REMARK 500 3 SER A 34 -67.57 -146.51 REMARK 500 3 ASN A 43 -17.50 -45.80 REMARK 500 3 SER A 66 -19.78 -47.36 REMARK 500 3 LYS A 102 -12.15 -174.85 REMARK 500 3 SER A 103 72.80 -101.33 REMARK 500 3 SER A 105 169.12 63.30 REMARK 500 3 MET A 116 -18.45 -42.27 REMARK 500 3 GLN A 129 16.83 -57.48 REMARK 500 3 LYS A 130 -61.43 -92.04 REMARK 500 3 ALA A 179 110.14 -169.72 REMARK 500 4 ARG A 30 37.31 -86.47 REMARK 500 4 GLU A 32 -8.44 -54.77 REMARK 500 4 SER A 33 -95.01 -50.88 REMARK 500 4 VAL A 54 155.55 -46.85 REMARK 500 4 GLU A 70 36.41 32.17 REMARK 500 4 LYS A 101 -76.63 -41.64 REMARK 500 4 GLU A 124 -26.97 -39.85 REMARK 500 4 GLN A 129 14.53 -56.42 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25157 RELATED DB: BMRB REMARK 900 RELATED ID: 2MTC RELATED DB: PDB DBREF 2MTD A 22 185 UNP B8F1J8 B8F1J8_BORGR 55 218 SEQRES 1 A 164 GLY LEU THR GLY GLU THR LYS ILE ARG LEU GLU SER SER SEQRES 2 A 164 ALA GLN GLU ILE LYS ASP GLU ILE ASN LYS ILE LYS ALA SEQRES 3 A 164 ASN ALA LYS LYS GLU GLY VAL LYS PHE GLU ALA PHE THR SEQRES 4 A 164 ASN THR GLN THR GLY SER LYS ILE SER GLU LYS PRO GLU SEQRES 5 A 164 PHE ILE LEU LYS ALA LYS ILE LYS ALA ILE GLN VAL ALA SEQRES 6 A 164 GLU ARG PHE VAL LYS ALA ILE LYS GLU GLU ALA GLU LYS SEQRES 7 A 164 LEU LYS LYS SER GLY SER SER GLY ALA PHE SER ALA MET SEQRES 8 A 164 TYR ASP LEU MET ILE ASP VAL SER LYS PRO LEU GLU GLU SEQRES 9 A 164 ILE GLY ILE GLN LYS MET THR GLY THR VAL LYS GLU ALA SEQRES 10 A 164 ALA GLN LYS THR PRO ALA THR THR ALA ASP GLY ILE ILE SEQRES 11 A 164 ALA ILE ALA GLN ALA MET GLU ASP LYS LEU ASN ASN VAL SEQRES 12 A 164 ASN LYS LYS GLN HIS ASP ALA LEU LYS ASN LEU LYS GLU SEQRES 13 A 164 LYS ALA LYS THR ALA THR THR THR HELIX 1 1 GLY A 25 ARG A 30 1 6 HELIX 2 2 ALA A 35 GLY A 53 1 19 HELIX 3 3 GLU A 57 GLU A 70 1 14 HELIX 4 4 PHE A 74 LYS A 102 1 29 HELIX 5 5 SER A 105 GLU A 124 1 20 HELIX 6 6 GLU A 125 GLY A 127 5 3 HELIX 7 7 ILE A 128 THR A 142 1 15 HELIX 8 8 THR A 146 LYS A 178 1 33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1