HEADER IMMUNE SYSTEM 19-AUG-14 2MTI TITLE NMR STRUCTURE OF THE LYMPHOCYTE RECEPTOR NKR-P1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY B MEMBER 1A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: C57BL/6; SOURCE 6 GENE: KLRB1A; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-30A(+) KEYWDS C-TYPE LECTIN-LIKE DOMAIN, NK CELLS, NK RECEPTOR, NKR-P1A, IMMUNE KEYWDS 2 SYSTEM EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.CHMELIK,D.ROZBESKY,E.POSPISILOVA,D.ADAMEK,P.NOVAK REVDAT 4 14-JUN-23 2MTI 1 REMARK REVDAT 3 24-AUG-16 2MTI 1 JRNL REVDAT 2 15-JUN-16 2MTI 1 JRNL REVDAT 1 11-NOV-15 2MTI 0 JRNL AUTH D.ROZBESKY,D.ADAMEK,E.POSPISILOVA,P.NOVAK,J.CHMELIK JRNL TITL SOLUTION STRUCTURE OF THE LYMPHOCYTE RECEPTOR NKRP1A REVEALS JRNL TITL 2 A DISTINCT CONFORMATION OF THE LONG LOOP REGION AS COMPARED JRNL TITL 3 TO IN THE CRYSTAL STRUCTURE. JRNL REF PROTEINS V. 84 1304 2016 JRNL REFN ISSN 0887-3585 JRNL PMID 27238500 JRNL DOI 10.1002/PROT.25078 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.3.6, RECOORD REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (RECOORD) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MTI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000104025. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 NKR-P1A, 15 MM PIPES, 50 MM REMARK 210 SODIUM CHLORIDE, 1 MM SODIUM REMARK 210 AZIDE, 90 % H2O, 10 % D2O, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY ALIPHATIC; 3D 1H-15N NOESY; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 HCCH-TOCSY AROMATIC; 2D (HB) REMARK 210 CB(CGCD)HD; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY 3.113, ARIA REMARK 210 2.3.1, CNS 1.21, CING REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 13 OE2 GLU A 49 1.58 REMARK 500 H2 SER A 1 OD2 ASP A 15 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 139.31 69.25 REMARK 500 1 PRO A 7 153.22 -48.78 REMARK 500 1 ARG A 14 83.98 -11.89 REMARK 500 1 MET A 42 120.53 -30.03 REMARK 500 1 LYS A 58 -63.69 69.86 REMARK 500 1 LYS A 60 -38.57 74.06 REMARK 500 1 ASP A 74 -42.87 175.77 REMARK 500 1 THR A 130 -70.20 -61.14 REMARK 500 1 ASN A 133 155.71 68.52 REMARK 500 1 TYR A 134 163.28 65.94 REMARK 500 1 TYR A 137 -55.25 -143.08 REMARK 500 2 ARG A 14 -88.61 57.93 REMARK 500 2 ASP A 15 25.31 -144.69 REMARK 500 2 MET A 42 120.09 -24.72 REMARK 500 2 LYS A 58 -56.79 68.96 REMARK 500 2 LYS A 60 -47.98 73.86 REMARK 500 2 TYR A 61 27.99 -70.21 REMARK 500 2 ASP A 74 -39.12 -177.70 REMARK 500 2 ARG A 119 -169.92 -100.96 REMARK 500 2 TYR A 134 -0.92 66.96 REMARK 500 3 ARG A 14 -70.87 67.83 REMARK 500 3 ASP A 15 24.69 -167.31 REMARK 500 3 MET A 42 122.40 -28.73 REMARK 500 3 LYS A 58 -69.65 67.98 REMARK 500 3 LYS A 60 -57.19 72.98 REMARK 500 3 TYR A 61 6.55 -68.74 REMARK 500 3 ASP A 74 -39.72 173.37 REMARK 500 3 THR A 96 -26.05 -141.36 REMARK 500 3 ASP A 117 87.48 62.64 REMARK 500 3 GLU A 129 -172.82 71.65 REMARK 500 3 ASN A 133 -92.22 -115.28 REMARK 500 4 ALA A 2 -38.71 -157.22 REMARK 500 4 LYS A 3 113.69 71.06 REMARK 500 4 MET A 42 118.75 -35.82 REMARK 500 4 LYS A 58 -59.07 67.36 REMARK 500 4 ASN A 62 -159.66 -127.11 REMARK 500 4 ASP A 74 -46.45 179.94 REMARK 500 4 LYS A 91 98.69 -57.72 REMARK 500 4 THR A 96 -19.92 -152.25 REMARK 500 4 SER A 132 -73.37 -84.35 REMARK 500 4 ASN A 133 -52.68 -123.63 REMARK 500 5 LYS A 3 -59.67 -123.57 REMARK 500 5 ARG A 14 -85.17 71.02 REMARK 500 5 ASP A 15 19.20 -146.42 REMARK 500 5 MET A 42 121.98 -26.62 REMARK 500 5 LYS A 58 -66.41 67.99 REMARK 500 5 LYS A 60 -40.85 71.31 REMARK 500 5 TYR A 61 37.68 -80.81 REMARK 500 5 ASN A 62 -158.88 -124.97 REMARK 500 5 ASP A 74 -42.80 178.46 REMARK 500 REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 119 0.07 SIDE CHAIN REMARK 500 5 ARG A 119 0.09 SIDE CHAIN REMARK 500 9 ARG A 119 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19282 RELATED DB: BMRB DBREF 2MTI A 1 139 UNP G5E882 G5E882_MOUSE 95 233 SEQRES 1 A 139 SER ALA LYS LEU GLU CYS PRO GLN ASP TRP LEU SER HIS SEQRES 2 A 139 ARG ASP LYS CYS PHE HIS VAL SER GLN VAL SER ASN THR SEQRES 3 A 139 TRP GLU GLU GLY LEU VAL ASP CYS ASP GLY LYS GLY ALA SEQRES 4 A 139 THR LEU MET LEU ILE GLN ASP GLN GLU GLU LEU ARG PHE SEQRES 5 A 139 LEU LEU ASP SER ILE LYS GLU LYS TYR ASN SER PHE TRP SEQRES 6 A 139 ILE GLY LEU ARG TYR THR LEU PRO ASP MET ASN TRP LYS SEQRES 7 A 139 TRP ILE ASN GLY SER THR LEU ASN SER ASP VAL LEU LYS SEQRES 8 A 139 ILE THR GLY ASP THR GLU ASN ASP SER CYS ALA ALA ILE SEQRES 9 A 139 SER GLY ASP LYS VAL THR PHE GLU SER CYS ASN SER ASP SEQRES 10 A 139 ASN ARG TRP ILE CYS GLN LYS GLU LEU TYR HIS GLU THR SEQRES 11 A 139 LEU SER ASN TYR VAL GLY TYR GLY HIS HELIX 1 1 THR A 26 LYS A 37 1 12 HELIX 2 2 ASP A 46 LYS A 58 1 13 SHEET 1 A 5 LEU A 11 HIS A 13 0 SHEET 2 A 5 LYS A 16 ASN A 25 -1 O LYS A 16 N HIS A 13 SHEET 3 A 5 ASN A 118 GLU A 125 -1 O ASN A 118 N ASN A 25 SHEET 4 A 5 PHE A 64 THR A 71 1 N TRP A 65 O ARG A 119 SHEET 5 A 5 ASN A 76 TRP A 79 -1 O LYS A 78 N ARG A 69 SHEET 1 B 5 THR A 40 LEU A 41 0 SHEET 2 B 5 ASN A 118 GLU A 125 -1 O GLN A 123 N THR A 40 SHEET 3 B 5 PHE A 64 THR A 71 1 N TRP A 65 O ARG A 119 SHEET 4 B 5 SER A 100 SER A 105 -1 O ILE A 104 N PHE A 64 SHEET 5 B 5 LYS A 108 SER A 113 -1 O THR A 110 N ALA A 103 SSBOND 1 CYS A 6 CYS A 17 1555 1555 2.00 SSBOND 2 CYS A 34 CYS A 122 1555 1555 2.03 SSBOND 3 CYS A 101 CYS A 114 1555 1555 2.02 CISPEP 1 LEU A 72 PRO A 73 1 -0.27 CISPEP 2 LEU A 72 PRO A 73 2 -4.24 CISPEP 3 LEU A 72 PRO A 73 3 -2.15 CISPEP 4 LEU A 72 PRO A 73 4 -1.69 CISPEP 5 LEU A 72 PRO A 73 5 -3.57 CISPEP 6 LEU A 72 PRO A 73 6 -3.55 CISPEP 7 LEU A 72 PRO A 73 7 -3.03 CISPEP 8 LEU A 72 PRO A 73 8 -3.86 CISPEP 9 LEU A 72 PRO A 73 9 -2.13 CISPEP 10 LEU A 72 PRO A 73 10 -3.93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1