HEADER NEUROPEPTIDE 15-SEP-14 2MUP OBSLTE 13-JAN-21 2MUP 6ZZF TITLE STRUCTURE OF THE CIS-(TYR39-PRO40) FORM OF THE HUMAN SECRETED LY- TITLE 2 6/UPAR RELATED PROTEIN-1 (SLURP-1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SECRETED LY-6/UPAR-RELATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-103; COMPND 5 SYNONYM: SLURP-1, ARS COMPONENT B, ARS(COMPONENT B)-81/S, ANTI- COMPND 6 NEOPLASTIC URINARY PROTEIN, ANUP; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLURP1, ARS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B(+) KEYWDS SLURP, LY-6, THREE-FINGER PROTEIN, NICOTINIC ACETYLCHOLINE RECEPTOR, KEYWDS 2 LYNX, LYNX1, SNAKE NEUROTOXIN, NEUROPEPTIDE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.S.PARAMONOV,Z.O.SHENKAREV,E.N.LYUKMANOVA,A.S.ARSENIEV REVDAT 4 13-JAN-21 2MUP 1 OBSLTE REMARK SEQADV REVDAT 3 27-FEB-19 2MUP 1 JRNL REVDAT 2 29-NOV-17 2MUP 1 HELIX REVDAT 1 09-DEC-15 2MUP 0 JRNL AUTH E.N.LYUKMANOVA,A.S.PARAMONOV,Z.O.SHENKAREV,A.S.ARSENIEV JRNL TITL STRUCTURAL AND FUNCTIONAL PROPERTIES OF HUMAN SECRETED JRNL TITL 2 LY-6/UPAR RELATED PROTEIN-1 (SLURP-1) IMPLY A NON-CANONICAL JRNL TITL 3 MODE OF INTERACTION WITH 7 NACHR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.0, NA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 6ZZF DEPOSITED AT PDBE REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000104067. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 4.7 REMARK 210 IONIC STRENGTH : 0.001 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-100% 15N] SLURP1, 95% REMARK 210 H2O/5% D2O; 0.3 MM [U-100% 13C; REMARK 210 U-100% 15N] SLURP1, 95% H2O/5% REMARK 210 D2O; 0.3 MM [U-100% 13C; U-100% REMARK 210 15N] SLURP1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D 1H-15N TOCSY; 3D REMARK 210 HNHA; 3D HCCH-TOCSY; 2D 1H-13C REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.0, CYANA 3.0, CARA 1.8 REMARK 210 METHOD USED : NA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 111 -75.74 -77.06 REMARK 500 1 ALA A 113 102.10 -53.52 REMARK 500 1 CYS A 115 76.67 62.47 REMARK 500 1 THR A 126 14.46 -145.05 REMARK 500 1 SER A 154 90.32 -166.33 REMARK 500 1 PRO A 160 -89.39 -69.72 REMARK 500 1 ALA A 165 89.98 68.50 REMARK 500 2 TYR A 104 85.99 -69.77 REMARK 500 2 PRO A 109 -165.78 -69.80 REMARK 500 2 ALA A 113 136.01 177.88 REMARK 500 2 SER A 114 102.68 -51.29 REMARK 500 2 THR A 126 15.55 -146.13 REMARK 500 2 PHE A 141 170.29 -52.17 REMARK 500 2 SER A 154 87.28 -160.85 REMARK 500 3 LYS A 107 -74.10 -67.45 REMARK 500 3 PRO A 109 79.56 -69.75 REMARK 500 3 MET A 110 -166.10 -104.65 REMARK 500 3 THR A 111 167.34 -48.68 REMARK 500 3 ALA A 113 137.10 -176.13 REMARK 500 3 CYS A 115 63.55 -107.90 REMARK 500 3 THR A 126 17.22 -146.66 REMARK 500 3 THR A 134 54.46 -101.00 REMARK 500 3 GLU A 136 83.85 -163.84 REMARK 500 3 TYR A 139 156.11 -47.95 REMARK 500 3 PRO A 145 -176.28 -69.71 REMARK 500 3 SER A 154 88.07 -165.17 REMARK 500 4 ALA A 113 -72.78 -54.25 REMARK 500 4 CYS A 115 80.52 -157.62 REMARK 500 4 THR A 126 15.15 -146.26 REMARK 500 4 ALA A 137 99.76 -178.70 REMARK 500 4 PRO A 145 -176.00 -69.73 REMARK 500 4 VAL A 146 -71.75 -92.39 REMARK 500 4 SER A 154 88.07 -161.84 REMARK 500 4 HIS A 167 80.74 -153.99 REMARK 500 5 PRO A 109 -165.76 -69.75 REMARK 500 5 THR A 111 157.44 -48.27 REMARK 500 5 ALA A 113 125.98 179.84 REMARK 500 5 ARG A 116 49.46 -147.90 REMARK 500 5 ILE A 118 97.08 -69.13 REMARK 500 5 THR A 126 18.07 -146.55 REMARK 500 5 ALA A 137 99.31 -177.83 REMARK 500 5 GLN A 143 35.66 -95.35 REMARK 500 5 SER A 154 82.05 -153.85 REMARK 500 5 ASP A 161 -60.73 -96.00 REMARK 500 5 PHE A 173 23.94 -141.99 REMARK 500 5 SER A 179 96.53 -174.44 REMARK 500 6 GLU A 108 68.91 -150.35 REMARK 500 6 PRO A 109 80.89 -69.78 REMARK 500 6 MET A 110 -44.39 -173.74 REMARK 500 6 ALA A 113 -70.78 -52.46 REMARK 500 REMARK 500 THIS ENTRY HAS 196 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25226 RELATED DB: BMRB REMARK 900 RELATED ID: 2MUO RELATED DB: PDB DBREF 2MUP A 101 181 UNP P55000 SLUR1_HUMAN 23 103 SEQADV 2MUP MET A 100 UNP P55000 INITIATING METHIONINE SEQRES 1 A 82 MET LEU LYS CYS TYR THR CYS LYS GLU PRO MET THR SER SEQRES 2 A 82 ALA SER CYS ARG THR ILE THR ARG CYS LYS PRO GLU ASP SEQRES 3 A 82 THR ALA CYS MET THR THR LEU VAL THR VAL GLU ALA GLU SEQRES 4 A 82 TYR PRO PHE ASN GLN SER PRO VAL VAL THR ARG SER CYS SEQRES 5 A 82 SER SER SER CYS VAL ALA THR ASP PRO ASP SER ILE GLY SEQRES 6 A 82 ALA ALA HIS LEU ILE PHE CYS CYS PHE ARG ASP LEU CYS SEQRES 7 A 82 ASN SER GLU LEU SHEET 1 A 2 LYS A 102 TYR A 104 0 SHEET 2 A 2 ILE A 118 ARG A 120 -1 O THR A 119 H CYS A 103 SHEET 1 B 3 THR A 148 SER A 152 0 SHEET 2 B 3 ALA A 127 LEU A 132 -1 H ALA A 127 O SER A 152 SHEET 3 B 3 LEU A 168 ILE A 169 -1 O LEU A 168 H LEU A 132 SSBOND 1 CYS A 103 CYS A 128 1555 1555 1.95 SSBOND 2 CYS A 106 CYS A 115 1555 1555 2.10 SSBOND 3 CYS A 121 CYS A 151 1555 1555 2.14 SSBOND 4 CYS A 155 CYS A 171 1555 1555 1.99 SSBOND 5 CYS A 172 CYS A 177 1555 1555 2.16 CISPEP 1 TYR A 139 PRO A 140 1 -0.10 CISPEP 2 TYR A 139 PRO A 140 2 0.01 CISPEP 3 TYR A 139 PRO A 140 3 -0.08 CISPEP 4 TYR A 139 PRO A 140 4 -0.03 CISPEP 5 TYR A 139 PRO A 140 5 -0.06 CISPEP 6 TYR A 139 PRO A 140 6 -0.13 CISPEP 7 TYR A 139 PRO A 140 7 -0.16 CISPEP 8 TYR A 139 PRO A 140 8 -0.07 CISPEP 9 TYR A 139 PRO A 140 9 -0.03 CISPEP 10 TYR A 139 PRO A 140 10 0.03 CISPEP 11 TYR A 139 PRO A 140 11 -0.02 CISPEP 12 TYR A 139 PRO A 140 12 -0.08 CISPEP 13 TYR A 139 PRO A 140 13 -0.09 CISPEP 14 TYR A 139 PRO A 140 14 -0.07 CISPEP 15 TYR A 139 PRO A 140 15 -0.02 CISPEP 16 TYR A 139 PRO A 140 16 -0.15 CISPEP 17 TYR A 139 PRO A 140 17 -0.11 CISPEP 18 TYR A 139 PRO A 140 18 -0.04 CISPEP 19 TYR A 139 PRO A 140 19 -0.16 CISPEP 20 TYR A 139 PRO A 140 20 -0.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1