HEADER HYDROLASE 17-SEP-14 2MUU TITLE THE PROTEOLYTIC ACTIVITY OF UBIQUITIN-SPECIFIC PROTEASE 28 IS TITLE 2 MODULATED BY THE N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 28; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 1-120); COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME 28, UBIQUITIN THIOESTERASE 28, COMPND 6 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 28; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP28, KIAA1515; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGBTNH KEYWDS HYDROLASE EXPDTA SOLUTION NMR NUMMDL 14 AUTHOR Y.WEN,L.SHI,N.ZHANG REVDAT 1 20-APR-16 2MUU 0 JRNL AUTH Y.WEN,L.SHI,Y.DING,R.CUI,W.T.HE,H.Y.HU,N.ZHANG JRNL TITL THE N-TERMINAL UBIQUITIN-BINDING REGION OF JRNL TITL 2 UBIQUITIN-SPECIFIC PROTEASE 28 MODULATES ITS JRNL TITL 3 DEUBIQUITINATION FUNCTION: NMR STRUCTURAL AND MECHANISTIC JRNL TITL 4 INSIGHTS. JRNL REF BIOCHEM.J. V. 471 155 2015 JRNL REFN ISSN 0264-6021 JRNL PMID 26268556 JRNL DOI 10.1042/BJ20150088 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.34 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-14. REMARK 100 THE RCSB ID CODE IS RCSB104072. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.2 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10 % D20, 90 % H20, 0.8-1.0 MM REMARK 210 [U-15N] USP, 20 MM NA2HPO4/ REMARK 210 NAH2PO4, 100 MM NACL, 2 MM DTT, REMARK 210 0.02 % NANH3, 90% H2O/10% D2O; 10 REMARK 210 % D20, 90 % H20, 0.8-1.0 MM [U- REMARK 210 15N; U-13C] USP, 20 MM NA2HPO4/ REMARK 210 NAH2PO4, 100 MM NACL, 2 MM DTT, REMARK 210 0.02 % NANH3, 90% H2O/10% D2O; REMARK 210 100 % D20, 0.8-1.0 MM [U-15N; U- REMARK 210 13C] USP, 20 MM NA2HPO4/NAH2PO4, REMARK 210 100 MM NACL, 2 MM DTT, 0.02 % REMARK 210 NANH3, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HN(CO) REMARK 210 CA; 3D H(CCO)NH; 3D HN(CA)CO; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH 2.34 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-14 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 VAL A 121 REMARK 465 ASP A 122 REMARK 465 LYS A 123 REMARK 465 LEU A 124 REMARK 465 ALA A 125 REMARK 465 ALA A 126 REMARK 465 ALA A 127 REMARK 465 LEU A 128 REMARK 465 GLU A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN A 26 OE2 GLU A 30 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 -138.83 -118.04 REMARK 500 1 GLN A 6 98.68 39.84 REMARK 500 1 ALA A 10 -167.90 42.96 REMARK 500 1 ALA A 11 -42.48 -132.05 REMARK 500 1 ALA A 14 59.54 -157.45 REMARK 500 1 ASP A 15 -167.03 -124.54 REMARK 500 1 SER A 19 85.07 28.84 REMARK 500 1 SER A 20 69.16 171.62 REMARK 500 1 PRO A 37 -25.08 -36.07 REMARK 500 1 GLU A 61 89.09 84.25 REMARK 500 1 ARG A 62 -73.80 -107.34 REMARK 500 1 VAL A 63 -104.94 -102.36 REMARK 500 1 LYS A 64 -122.44 61.22 REMARK 500 1 GLU A 65 81.67 174.68 REMARK 500 1 PRO A 66 -102.54 -81.95 REMARK 500 1 SER A 67 -85.94 6.88 REMARK 500 1 GLN A 68 -176.19 -44.95 REMARK 500 1 THR A 70 -158.91 30.73 REMARK 500 1 VAL A 71 -153.45 28.86 REMARK 500 1 THR A 73 -170.19 -49.78 REMARK 500 1 VAL A 78 -126.45 -130.67 REMARK 500 1 GLU A 79 147.79 -26.37 REMARK 500 1 ALA A 82 172.03 -40.59 REMARK 500 1 ALA A 83 -144.83 -177.82 REMARK 500 1 LYS A 85 -80.15 -70.79 REMARK 500 1 GLU A 86 -27.73 -31.88 REMARK 500 1 ALA A 89 -172.16 44.90 REMARK 500 1 LYS A 90 -156.61 -103.13 REMARK 500 1 ILE A 92 131.71 -39.02 REMARK 500 1 ASP A 93 112.63 -168.64 REMARK 500 1 LEU A 94 -52.29 -131.53 REMARK 500 1 THR A 95 -162.56 -76.38 REMARK 500 1 HIS A 96 -125.92 53.88 REMARK 500 1 LYS A 99 11.22 40.19 REMARK 500 1 PRO A 114 -128.81 -49.11 REMARK 500 1 LYS A 115 -93.64 -121.28 REMARK 500 1 ALA A 118 -138.58 41.69 REMARK 500 2 THR A 2 129.86 -29.29 REMARK 500 2 ALA A 3 -107.43 -108.60 REMARK 500 2 GLN A 6 154.70 179.85 REMARK 500 2 ALA A 10 172.01 -39.36 REMARK 500 2 ALA A 13 -120.55 33.14 REMARK 500 2 ALA A 14 64.01 -115.73 REMARK 500 2 ASP A 15 -144.86 66.94 REMARK 500 2 HIS A 17 -80.21 -95.73 REMARK 500 2 SER A 19 -150.78 -133.54 REMARK 500 2 CYS A 21 -161.62 -128.59 REMARK 500 2 GLN A 22 -12.32 -42.76 REMARK 500 2 PRO A 37 -21.05 -36.94 REMARK 500 2 ASP A 60 17.31 -57.50 REMARK 500 REMARK 500 THIS ENTRY HAS 544 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19077 RELATED DB: BMRB DBREF 2MUU A 1 120 UNP Q96RU2 UBP28_HUMAN 1 120 SEQADV 2MUU GLY A -1 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU SER A 0 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU VAL A 121 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU ASP A 122 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU LYS A 123 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU LEU A 124 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU ALA A 125 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU ALA A 126 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU ALA A 127 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU LEU A 128 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU GLU A 129 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU HIS A 130 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU HIS A 131 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU HIS A 132 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU HIS A 133 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU HIS A 134 UNP Q96RU2 EXPRESSION TAG SEQADV 2MUU HIS A 135 UNP Q96RU2 EXPRESSION TAG SEQRES 1 A 137 GLY SER MET THR ALA GLU LEU GLN GLN ASP ASP ALA ALA SEQRES 2 A 137 GLY ALA ALA ASP GLY HIS GLY SER SER CYS GLN MET LEU SEQRES 3 A 137 LEU ASN GLN LEU ARG GLU ILE THR GLY ILE GLN ASP PRO SEQRES 4 A 137 SER PHE LEU HIS GLU ALA LEU LYS ALA SER ASN GLY ASP SEQRES 5 A 137 ILE THR GLN ALA VAL SER LEU LEU THR ASP GLU ARG VAL SEQRES 6 A 137 LYS GLU PRO SER GLN ASP THR VAL ALA THR GLU PRO SER SEQRES 7 A 137 GLU VAL GLU GLY SER ALA ALA ASN LYS GLU VAL LEU ALA SEQRES 8 A 137 LYS VAL ILE ASP LEU THR HIS ASP ASN LYS ASP ASP LEU SEQRES 9 A 137 GLN ALA ALA ILE ALA LEU SER LEU LEU GLU SER PRO LYS SEQRES 10 A 137 ILE GLN ALA ASP GLY VAL ASP LYS LEU ALA ALA ALA LEU SEQRES 11 A 137 GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 GLN A 6 ALA A 10 5 5 HELIX 2 2 CYS A 21 THR A 32 1 12 HELIX 3 3 ASP A 36 SER A 47 1 12 HELIX 4 4 ASP A 50 ASP A 60 1 11 HELIX 5 5 LYS A 99 LEU A 111 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1