HEADER PERIPLASMIC BINDING PROTEIN 18-SEP-14 2MV0 TITLE SOLUTION NMR STRUCTURE OF MALTOSE-BINDING PROTEIN FROM ESCHERICHIA TITLE 2 COLI, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET ER690 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MBP, MMBP, MALTODEXTRIN-BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B4034, JW3994, MALE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21_NESG KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, PERIPLASMIC BINDING KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR P.ROSSI,O.F.LANGE,N.G.SGOURAKIS,Y.SONG,H.LEE,J.M.ARAMINI,A.ERTEKIN, AUTHOR 2 R.XIAO,T.B.ACTON,D.BAKER,G.T.MONTELIONE,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2MV0 1 REMARK REVDAT 2 01-JUL-15 2MV0 1 JRNL REVDAT 1 10-DEC-14 2MV0 0 JRNL AUTH O.F.LANGE,P.ROSSI,N.G.SGOURAKIS,Y.SONG,H.W.LEE,J.M.ARAMINI, JRNL AUTH 2 A.ERTEKIN,R.XIAO,T.B.ACTON,G.T.MONTELIONE,D.BAKER JRNL TITL DETERMINATION OF SOLUTION STRUCTURES OF PROTEINS UP TO 40 JRNL TITL 2 KDA USING CS-ROSETTA WITH SPARSE NMR DATA FROM DEUTERATED JRNL TITL 3 SAMPLES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 10873 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22733734 JRNL DOI 10.1073/PNAS.1203013109 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1, ROSETTA REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), BAKER (ROSETTA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000104078. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.05 MM ER690.005, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N NOESY; 3D HCCH-TOCSY; 3D (H) REMARK 210 NNH HSQC-NOESY-HSQC; 3D (H)CCH REMARK 210 HSQC-NOESY-HSQC; 3D (H)CNH HSQC- REMARK 210 NOESY-HSQC; 3D (H)NCH HSQC-NOESY- REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 XEASY, TOPSPIN, VNMRJ, PINE, REMARK 210 SPARKY, TALOS+, PALES, REDCAT, REMARK 210 PSVS REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-10 REMARK 470 RES CSSEQI ATOMS REMARK 470 TRP A 230 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 230 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 10 PRO A 159 CD PRO A 159 N 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 15 -135.95 -125.01 REMARK 500 1 ASP A 55 -165.35 -120.02 REMARK 500 1 SER A 255 -72.74 -139.34 REMARK 500 1 TYR A 283 -64.74 -123.71 REMARK 500 2 ASP A 55 -165.43 -129.59 REMARK 500 2 SER A 255 -84.98 -125.01 REMARK 500 3 LYS A 42 70.99 55.18 REMARK 500 3 ALA A 146 -72.86 -65.10 REMARK 500 3 ASN A 173 -69.18 74.12 REMARK 500 3 TYR A 176 77.22 -110.46 REMARK 500 3 ASP A 209 -164.98 -119.97 REMARK 500 3 ILE A 235 -61.33 -90.77 REMARK 500 3 SER A 255 -94.93 -114.97 REMARK 500 3 ASN A 272 59.92 -118.00 REMARK 500 3 TYR A 283 -62.97 -125.00 REMARK 500 4 LEU A 115 108.42 -53.06 REMARK 500 4 LYS A 189 -64.40 -95.04 REMARK 500 4 THR A 208 108.54 -54.59 REMARK 500 4 SER A 255 -74.93 -139.54 REMARK 500 4 TYR A 283 -70.66 -125.07 REMARK 500 5 ASP A 55 -166.02 -119.99 REMARK 500 5 LEU A 113 118.47 -161.55 REMARK 500 5 ASN A 150 77.29 -117.69 REMARK 500 5 ASN A 173 -119.95 58.85 REMARK 500 5 SER A 255 -75.01 -137.60 REMARK 500 5 LEU A 285 51.10 -115.85 REMARK 500 6 TYR A 17 25.24 -158.98 REMARK 500 6 ASN A 173 -65.07 80.30 REMARK 500 6 THR A 208 109.39 -53.88 REMARK 500 6 SER A 255 -75.02 -154.94 REMARK 500 6 TYR A 283 -64.94 -124.94 REMARK 500 6 ASN A 332 50.01 -105.83 REMARK 500 7 ASP A 55 -168.42 -113.23 REMARK 500 7 TYR A 99 119.61 -160.42 REMARK 500 7 ILE A 108 -21.59 -165.06 REMARK 500 7 TYR A 171 107.95 -54.93 REMARK 500 7 ASP A 209 -166.82 -129.97 REMARK 500 7 TRP A 230 -35.09 175.04 REMARK 500 7 LEU A 247 51.58 -140.96 REMARK 500 7 SER A 255 -87.37 -125.19 REMARK 500 7 ASN A 272 60.04 -110.55 REMARK 500 8 LYS A 15 40.01 -151.41 REMARK 500 8 ILE A 108 14.96 163.94 REMARK 500 8 ALA A 109 144.78 -171.22 REMARK 500 8 ASN A 173 -67.40 73.26 REMARK 500 8 SER A 255 -99.97 -105.10 REMARK 500 8 TYR A 283 -50.09 -120.00 REMARK 500 9 ASP A 209 -166.76 -123.06 REMARK 500 9 TRP A 230 -22.49 -175.02 REMARK 500 9 SER A 255 -75.27 -139.99 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25237 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-ER690 RELATED DB: TARGETTRACK DBREF 2MV0 A 1 370 UNP P0AEX9 MALE_ECOLI 27 396 SEQRES 1 A 370 LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN GLY SEQRES 2 A 370 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 3 A 370 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 4 A 370 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 5 A 370 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 6 A 370 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 7 A 370 ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 8 A 370 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 9 A 370 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 10 A 370 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 11 A 370 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 12 A 370 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 13 A 370 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 14 A 370 LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 15 A 370 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 16 A 370 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 17 A 370 ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU SEQRES 18 A 370 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 19 A 370 ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL LEU SEQRES 20 A 370 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 21 A 370 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 22 A 370 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 23 A 370 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 24 A 370 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU ALA SEQRES 25 A 370 LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA GLN SEQRES 26 A 370 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 27 A 370 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 28 A 370 SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP ALA SEQRES 29 A 370 GLN THR ARG ILE THR LYS HELIX 1 1 GLY A 16 GLY A 32 1 17 HELIX 2 2 LYS A 42 ALA A 52 1 11 HELIX 3 3 ARG A 66 SER A 73 1 8 HELIX 4 4 ASP A 82 LEU A 89 1 8 HELIX 5 5 TYR A 90 ASP A 95 1 6 HELIX 6 6 THR A 128 GLU A 130 5 3 HELIX 7 7 GLU A 131 ALA A 141 1 11 HELIX 8 8 GLU A 153 PHE A 156 5 4 HELIX 9 9 THR A 157 ASP A 164 1 8 HELIX 10 10 ASN A 185 ASN A 201 1 17 HELIX 11 11 ASP A 209 GLY A 220 1 12 HELIX 12 12 ALA A 231 ASP A 236 1 6 HELIX 13 13 THR A 237 LYS A 239 5 3 HELIX 14 14 ASN A 272 TYR A 283 1 12 HELIX 15 15 THR A 286 ASN A 294 1 9 HELIX 16 16 LEU A 304 ALA A 312 1 9 HELIX 17 17 ASP A 314 GLN A 325 1 12 HELIX 18 18 ILE A 333 SER A 352 1 20 HELIX 19 19 THR A 356 LYS A 370 1 15 SHEET 1 A 5 LYS A 34 GLU A 38 0 SHEET 2 A 5 LYS A 6 TRP A 10 1 N ILE A 9 O THR A 36 SHEET 3 A 5 ILE A 59 TRP A 62 1 O ILE A 59 N TRP A 10 SHEET 4 A 5 VAL A 259 ILE A 266 -1 O SER A 263 N TRP A 62 SHEET 5 A 5 TYR A 106 ALA A 112 -1 N GLU A 111 O GLY A 260 SHEET 1 B 5 LYS A 34 GLU A 38 0 SHEET 2 B 5 LYS A 6 TRP A 10 1 N ILE A 9 O THR A 36 SHEET 3 B 5 ILE A 59 TRP A 62 1 O ILE A 59 N TRP A 10 SHEET 4 B 5 VAL A 259 ILE A 266 -1 O SER A 263 N TRP A 62 SHEET 5 B 5 ILE A 329 MET A 330 1 O MET A 330 N VAL A 259 SHEET 1 C 2 ARG A 98 TYR A 99 0 SHEET 2 C 2 LYS A 102 LEU A 103 -1 O LYS A 102 N TYR A 99 SHEET 1 D 2 LEU A 115 ASN A 118 0 SHEET 2 D 2 TYR A 242 THR A 245 -1 O THR A 245 N LEU A 115 CISPEP 1 PRO A 123 ASN A 124 5 -12.55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1