HEADER CELL ADHESION 03-OCT-14 2MVG TITLE SOLUTION STRUCTURE OF DECORIN BINDING PROTEIN B FROM BORRELIA TITLE 2 BURGDORFERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECORIN-BINDING PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-187; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIA BURGDORFERI; SOURCE 3 ORGANISM_TAXID: 224326; SOURCE 4 STRAIN: ATCC 35210 / B31 / CIP 102532 / DSM 4680; SOURCE 5 GENE: BB_A25, DBP, DBPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHUE KEYWDS ADHESIN, GLYCOSAMINOGLYCAN-BINDING PROTEIN, LIPOPROTEIN, CELL KEYWDS 2 ADHESION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.WANG,W.FENG REVDAT 3 14-JUN-23 2MVG 1 REMARK SEQADV REVDAT 2 27-JAN-16 2MVG 1 JRNL REVDAT 1 19-AUG-15 2MVG 0 JRNL AUTH W.FENG,X.WANG JRNL TITL STRUCTURE OF DECORIN BINDING PROTEIN B FROM BORRELIA JRNL TITL 2 BURGDORFERI AND ITS INTERACTIONS WITH GLYCOSAMINOGLYCANS. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1854 1823 2015 JRNL REFN ISSN 0006-3002 JRNL PMID 26275806 JRNL DOI 10.1016/J.BBAPAP.2015.08.003 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000104094. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 DBPB, 50 MM SODIUM PHOSPHATE, REMARK 210 150 MM SODIUM CHLORIDE, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D C(CO)NH; 3D REMARK 210 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 28 7.74 55.21 REMARK 500 1 THR A 29 155.32 57.43 REMARK 500 1 LEU A 33 13.45 53.28 REMARK 500 1 LEU A 45 -25.88 -39.36 REMARK 500 1 ALA A 60 39.97 -89.55 REMARK 500 1 PHE A 61 -79.60 -56.53 REMARK 500 1 THR A 62 114.44 -161.01 REMARK 500 1 LEU A 64 34.87 -70.06 REMARK 500 1 LYS A 65 -23.59 68.15 REMARK 500 1 THR A 66 24.19 46.20 REMARK 500 1 LYS A 69 32.63 -84.07 REMARK 500 1 VAL A 70 90.03 -45.95 REMARK 500 1 LEU A 102 -15.39 -46.38 REMARK 500 1 LEU A 133 27.84 -79.84 REMARK 500 1 ASN A 147 23.42 -140.65 REMARK 500 1 ALA A 149 -74.11 -94.00 REMARK 500 1 GLU A 150 -63.64 -29.09 REMARK 500 1 ILE A 172 25.69 -168.82 REMARK 500 1 GLU A 173 -130.51 54.46 REMARK 500 1 LYS A 178 75.02 55.29 REMARK 500 1 LYS A 185 82.73 49.44 REMARK 500 1 LYS A 186 65.77 -157.93 REMARK 500 2 LEU A 25 -75.90 -73.85 REMARK 500 2 VAL A 26 78.46 46.66 REMARK 500 2 ILE A 44 -17.93 -44.84 REMARK 500 2 ILE A 47 -70.85 -68.42 REMARK 500 2 PHE A 61 -86.67 51.64 REMARK 500 2 LYS A 65 7.89 54.51 REMARK 500 2 THR A 66 -159.31 55.69 REMARK 500 2 LYS A 103 -9.38 -53.26 REMARK 500 2 ALA A 135 -26.84 -38.82 REMARK 500 2 ASN A 144 99.17 -168.48 REMARK 500 2 ALA A 149 -61.70 -94.97 REMARK 500 2 GLU A 150 -76.42 -24.75 REMARK 500 2 GLN A 170 32.00 -67.48 REMARK 500 2 SER A 183 116.40 55.80 REMARK 500 3 SER A 22 166.15 56.06 REMARK 500 3 LEU A 25 -170.16 -54.36 REMARK 500 3 ARG A 28 -49.22 -166.45 REMARK 500 3 LEU A 33 14.80 52.63 REMARK 500 3 LEU A 45 -21.20 -39.23 REMARK 500 3 PHE A 58 -37.81 -144.61 REMARK 500 3 LYS A 65 -4.87 59.20 REMARK 500 3 THR A 66 -30.62 65.04 REMARK 500 3 VAL A 70 -110.14 28.79 REMARK 500 3 GLU A 126 -19.77 -42.45 REMARK 500 3 VAL A 128 33.18 -74.79 REMARK 500 3 LEU A 133 41.94 -71.81 REMARK 500 3 PRO A 145 98.06 -69.36 REMARK 500 3 ASN A 147 30.80 -170.42 REMARK 500 REMARK 500 THIS ENTRY HAS 199 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25266 RELATED DB: BMRB DBREF 2MVG A 22 187 UNP P0CL68 DBPB_BORBU 22 187 SEQADV 2MVG SER A 21 UNP P0CL68 EXPRESSION TAG SEQRES 1 A 167 SER SER ILE GLY LEU VAL GLU ARG THR ASN ALA ALA LEU SEQRES 2 A 167 GLU SER SER SER LYS ASP LEU LYS ASN LYS ILE LEU LYS SEQRES 3 A 167 ILE LYS LYS GLU ALA THR GLY LYS GLY VAL LEU PHE GLU SEQRES 4 A 167 ALA PHE THR GLY LEU LYS THR GLY SER LYS VAL THR SER SEQRES 5 A 167 GLY GLY LEU ALA LEU ARG GLU ALA LYS VAL GLN ALA ILE SEQRES 6 A 167 VAL GLU THR GLY LYS PHE LEU LYS ILE ILE GLU GLU GLU SEQRES 7 A 167 ALA LEU LYS LEU LYS GLU THR GLY ASN SER GLY GLN PHE SEQRES 8 A 167 LEU ALA MET PHE ASP LEU MET LEU GLU VAL VAL GLU SER SEQRES 9 A 167 LEU GLU ASP VAL GLY ILE ILE GLY LEU LYS ALA ARG VAL SEQRES 10 A 167 LEU GLU GLU SER LYS ASN ASN PRO ILE ASN THR ALA GLU SEQRES 11 A 167 ARG LEU LEU ALA ALA LYS ALA GLN ILE GLU ASN GLN LEU SEQRES 12 A 167 LYS VAL VAL LYS GLU LYS GLN ASN ILE GLU ASN GLY GLY SEQRES 13 A 167 GLU LYS LYS ASN ASN LYS SER LYS LYS LYS LYS HELIX 1 1 LEU A 33 LYS A 54 1 22 HELIX 2 2 GLY A 74 LYS A 103 1 30 HELIX 3 3 ASN A 107 VAL A 121 1 15 HELIX 4 4 GLU A 123 GLY A 129 5 7 HELIX 5 5 LEU A 133 ASN A 144 1 12 HELIX 6 6 ALA A 149 GLU A 168 1 20 HELIX 7 7 LYS A 169 ILE A 172 5 4 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1