data_2MVI # _entry.id 2MVI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MVI pdb_00002mvi 10.2210/pdb2mvi/pdb RCSB RCSB104096 ? ? BMRB 25269 ? ? WWPDB D_1000104096 ? ? # _pdbx_database_related.db_id 25269 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MVI _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-10-06 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Goroncy, A.K.' 1 'Loo, T.S.' 2 'Koolard, A.' 3 'Patchett, M.L.' 4 'Norris, G.E.' 5 # _citation.id primary _citation.title 'Structural characterization of the S-glycosylated bacteriocin ASM1 from Lactobacillus plantarum' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Goroncy, A.K.' 1 ? primary 'Loo, T.S.' 2 ? primary 'Koolard, A.' 3 ? primary 'Patchett, M.L.' 4 ? primary 'Norris, G.E.' 5 ? # _cell.entry_id 2MVI _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2MVI _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Bacteriocin plantarican ASM1' 4651.206 1 ? ? 'UNP residues 22-64' ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KPAWCWYTLAMCGAGYDSGTCDYMYSHCFGVKHSSGGGGSYHC _entity_poly.pdbx_seq_one_letter_code_can KPAWCWYTLAMCGAGYDSGTCDYMYSHCFGVKHSSGGGGSYHC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 PRO n 1 3 ALA n 1 4 TRP n 1 5 CYS n 1 6 TRP n 1 7 TYR n 1 8 THR n 1 9 LEU n 1 10 ALA n 1 11 MET n 1 12 CYS n 1 13 GLY n 1 14 ALA n 1 15 GLY n 1 16 TYR n 1 17 ASP n 1 18 SER n 1 19 GLY n 1 20 THR n 1 21 CYS n 1 22 ASP n 1 23 TYR n 1 24 MET n 1 25 TYR n 1 26 SER n 1 27 HIS n 1 28 CYS n 1 29 PHE n 1 30 GLY n 1 31 VAL n 1 32 LYS n 1 33 HIS n 1 34 SER n 1 35 SER n 1 36 GLY n 1 37 GLY n 1 38 GLY n 1 39 GLY n 1 40 SER n 1 41 TYR n 1 42 HIS n 1 43 CYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Lactobacillus plantarum' _entity_src_nat.pdbx_ncbi_taxonomy_id 1590 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PASM1_LACPN _struct_ref.pdbx_db_accession C7G1H4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KPAWCWYTLAMCGAGYDSGTCDYMYSHCFGVKHSSGGGGSYHC _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MVI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 43 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C7G1H4 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 64 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 43 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '2D 1H-13C HMBC' 1 4 1 '2D 1H-1H TOCSY' 1 5 1 '2D 1H-15N-HSQC-TOCSY' 1 6 1 '2D 1H-13C-HSQC-TOCSY' 1 7 1 '2D 1H-13C-H2BC' 1 8 1 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH ? _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 310 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '1 mM protein, 38% d3-acetonitrile, 56.8% water, 0.2% d-acetic acid, 5% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '38% d3-acetonitrile, 56.8% water, 0.2% d-acetic acid, 5% D2O' # _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MVI _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MVI _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MVI _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin 2.1 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 2011.118.08.55 2 'Naohiro Kobayashi' processing KUJIRA 0.9843 3 'Johnson, One Moon Scientific' processing NMRView ? 4 'Guntert, Mumenthaler and Wuthrich' refinement CYANA 3.0 5 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3.0 6 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MVI _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MVI _struct.title 'Structure of the S-glycosylated bacteriocin ASM1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MVI _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text 'antimicrobial protein, glycopeptide, S-glycosylation, O-glycosylation, bacteriocin, glycocin' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 22 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 26 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 22 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 26 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 28 SG ? ? A CYS 5 A CYS 28 1_555 ? ? ? ? ? ? ? 2.077 ? ? disulf2 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 21 SG ? ? A CYS 12 A CYS 21 1_555 ? ? ? ? ? ? ? 1.985 ? ? covale1 covale one ? A SER 18 OG ? ? ? 1_555 B NAG . C1 ? ? A SER 18 A NAG 101 1_555 ? ? ? ? ? ? ? 1.404 ? O-Glycosylation covale2 covale one ? A CYS 43 SG ? ? ? 1_555 C NAG . C1 ? ? A CYS 43 A NAG 102 1_555 ? ? ? ? ? ? ? 1.990 ? S-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _atom_sites.entry_id 2MVI _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 TRP 4 4 4 TRP TRP A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 MET 11 11 11 MET MET A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 MET 24 24 24 MET MET A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 HIS 33 33 33 HIS HIS A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 CYS 43 43 43 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 101 100 NAG NAG A . C 2 NAG 1 102 200 NAG NAG A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id SER _pdbx_struct_mod_residue.label_seq_id 18 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id SER _pdbx_struct_mod_residue.auth_seq_id 18 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id SER _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-10 2 'Structure model' 1 1 2020-07-29 3 'Structure model' 1 2 2023-06-14 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Structure summary' 4 3 'Structure model' 'Database references' 5 3 'Structure model' Other 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' entity 3 2 'Structure model' pdbx_chem_comp_identifier 4 2 'Structure model' pdbx_entity_nonpoly 5 2 'Structure model' pdbx_nmr_software 6 2 'Structure model' pdbx_nmr_spectrometer 7 2 'Structure model' struct_conn 8 2 'Structure model' struct_site 9 2 'Structure model' struct_site_gen 10 3 'Structure model' chem_comp 11 3 'Structure model' database_2 12 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.name' 2 2 'Structure model' '_chem_comp.type' 3 2 'Structure model' '_entity.pdbx_description' 4 2 'Structure model' '_pdbx_entity_nonpoly.name' 5 2 'Structure model' '_pdbx_nmr_software.name' 6 2 'Structure model' '_pdbx_nmr_spectrometer.model' 7 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 2 'Structure model' '_struct_conn.pdbx_role' 9 3 'Structure model' '_chem_comp.pdbx_synonyms' 10 3 'Structure model' '_database_2.pdbx_DOI' 11 3 'Structure model' '_database_2.pdbx_database_accession' 12 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_exptl_sample.component entity-1 _pdbx_nmr_exptl_sample.concentration 1 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MVI _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 577 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count 116 _pdbx_nmr_constraints.NOE_medium_range_total_count 138 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count 33 _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 17 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 2 ? ? -69.82 -168.63 2 1 TRP A 6 ? ? -153.50 -47.55 3 1 TYR A 7 ? ? -173.60 -167.07 4 1 ALA A 10 ? ? 64.63 62.29 5 1 ASP A 22 ? ? -152.15 -76.48 6 1 SER A 26 ? ? -86.14 31.22 7 1 HIS A 42 ? ? -94.77 39.36 8 2 PRO A 2 ? ? -69.73 -169.57 9 2 TRP A 6 ? ? -153.14 -42.24 10 2 TYR A 7 ? ? -179.53 -167.17 11 2 ALA A 10 ? ? 64.93 62.92 12 2 MET A 11 ? ? -66.87 -74.45 13 2 ASP A 22 ? ? -154.91 -76.02 14 2 SER A 26 ? ? -86.00 32.62 15 2 SER A 40 ? ? -92.71 -70.40 16 2 HIS A 42 ? ? -94.91 39.45 17 3 PRO A 2 ? ? -69.78 -168.80 18 3 TRP A 6 ? ? -153.55 -52.69 19 3 TYR A 7 ? ? -166.50 -167.24 20 3 ALA A 10 ? ? 64.35 63.66 21 3 ASP A 22 ? ? -152.14 -76.04 22 3 SER A 26 ? ? -86.20 30.62 23 3 SER A 40 ? ? -105.27 64.04 24 3 HIS A 42 ? ? -94.89 39.28 25 4 PRO A 2 ? ? -69.73 -169.47 26 4 TRP A 6 ? ? -153.90 -43.26 27 4 TYR A 7 ? ? -175.75 -167.18 28 4 ALA A 10 ? ? 64.78 62.79 29 4 ASP A 22 ? ? -155.42 -75.86 30 4 SER A 26 ? ? -85.87 31.67 31 4 SER A 34 ? ? -104.82 42.13 32 4 HIS A 42 ? ? -95.02 37.08 33 5 PRO A 2 ? ? -69.78 -169.34 34 5 TRP A 6 ? ? -155.16 -41.64 35 5 TYR A 7 ? ? -177.03 -167.02 36 5 ALA A 10 ? ? 64.57 62.91 37 5 MET A 11 ? ? -64.74 -71.69 38 5 ASP A 22 ? ? -153.94 -76.01 39 5 SER A 26 ? ? -86.15 31.14 40 5 HIS A 42 ? ? -95.05 37.09 41 6 PRO A 2 ? ? -69.79 -168.85 42 6 TRP A 6 ? ? -157.13 -41.68 43 6 TYR A 7 ? ? -178.25 -167.62 44 6 ALA A 10 ? ? 65.00 62.98 45 6 MET A 11 ? ? -52.56 -71.03 46 6 ASP A 22 ? ? -155.94 -75.37 47 6 HIS A 42 ? ? -94.84 39.40 48 7 PRO A 2 ? ? -69.80 -169.13 49 7 TRP A 6 ? ? -153.99 -47.06 50 7 TYR A 7 ? ? -171.59 -166.78 51 7 ALA A 10 ? ? 64.77 62.65 52 7 MET A 11 ? ? -64.25 -72.04 53 7 ASP A 22 ? ? -156.93 -75.70 54 7 SER A 26 ? ? -85.90 32.02 55 7 HIS A 42 ? ? -94.82 39.14 56 8 PRO A 2 ? ? -69.79 -169.17 57 8 TRP A 6 ? ? -156.24 -41.65 58 8 TYR A 7 ? ? -176.32 -167.66 59 8 ALA A 10 ? ? 64.25 64.07 60 8 ASP A 22 ? ? -153.84 -76.10 61 8 SER A 26 ? ? -85.91 31.02 62 8 HIS A 33 ? ? -58.71 178.76 63 8 HIS A 42 ? ? -94.65 39.10 64 9 PRO A 2 ? ? -69.82 -168.63 65 9 TRP A 6 ? ? -158.83 -46.73 66 9 TYR A 7 ? ? -172.41 -168.40 67 9 ALA A 10 ? ? 64.17 63.68 68 9 ASP A 22 ? ? -155.44 -75.88 69 9 HIS A 42 ? ? -94.84 39.04 70 10 PRO A 2 ? ? -69.78 -168.88 71 10 TRP A 6 ? ? -156.01 -46.70 72 10 TYR A 7 ? ? -171.73 -167.33 73 10 ALA A 10 ? ? 65.27 62.62 74 10 MET A 11 ? ? -51.90 -70.29 75 10 ASP A 22 ? ? -155.34 -75.64 76 10 HIS A 42 ? ? -94.56 39.34 77 11 PRO A 2 ? ? -69.75 -169.82 78 11 TRP A 6 ? ? -152.06 -43.31 79 11 TYR A 7 ? ? -179.91 -167.28 80 11 ALA A 10 ? ? 64.58 63.09 81 11 MET A 11 ? ? -67.35 -74.94 82 11 ASP A 22 ? ? -152.98 -76.23 83 11 SER A 26 ? ? -86.00 32.27 84 11 SER A 35 ? ? -68.41 90.81 85 11 HIS A 42 ? ? -95.08 36.94 86 12 PRO A 2 ? ? -69.74 -170.73 87 12 TRP A 6 ? ? -146.29 -45.18 88 12 TYR A 7 ? ? -179.75 -166.72 89 12 ALA A 10 ? ? 64.75 63.52 90 12 MET A 11 ? ? -68.41 -74.84 91 12 ASP A 22 ? ? -153.54 -76.11 92 12 SER A 26 ? ? -86.10 31.74 93 12 HIS A 42 ? ? -94.55 39.42 94 13 PRO A 2 ? ? -69.76 -169.02 95 13 TRP A 6 ? ? -156.95 -40.91 96 13 TYR A 7 ? ? -178.83 -168.71 97 13 ALA A 10 ? ? 65.25 64.06 98 13 ASP A 22 ? ? -153.47 -75.93 99 13 HIS A 42 ? ? -94.82 39.01 100 14 PRO A 2 ? ? -69.76 -168.52 101 14 TRP A 6 ? ? -157.08 -46.38 102 14 TYR A 7 ? ? -170.30 -167.96 103 14 ALA A 10 ? ? 64.05 63.49 104 14 ASP A 22 ? ? -155.74 -76.24 105 14 HIS A 42 ? ? -95.03 37.32 106 15 PRO A 2 ? ? -69.78 -168.55 107 15 TRP A 6 ? ? -156.33 -49.46 108 15 TYR A 7 ? ? -169.55 -168.93 109 15 ALA A 10 ? ? 65.20 64.43 110 15 ASP A 22 ? ? -155.84 -76.30 111 15 SER A 26 ? ? -86.05 30.52 112 15 HIS A 42 ? ? -95.12 37.19 113 16 PRO A 2 ? ? -69.79 -170.55 114 16 TRP A 6 ? ? -147.13 -43.45 115 16 TYR A 7 ? ? -179.55 -166.62 116 16 ALA A 10 ? ? 65.05 63.34 117 16 MET A 11 ? ? -66.42 -70.93 118 16 ASP A 22 ? ? -153.66 -76.14 119 16 SER A 26 ? ? -86.04 32.44 120 16 HIS A 42 ? ? -94.93 39.09 121 17 PRO A 2 ? ? -69.80 -169.95 122 17 TRP A 6 ? ? -150.33 -42.18 123 17 TYR A 7 ? ? -179.59 -168.40 124 17 ALA A 10 ? ? 65.18 64.46 125 17 ASP A 22 ? ? -153.07 -76.55 126 17 HIS A 42 ? ? -94.70 39.32 127 18 PRO A 2 ? ? -69.79 -170.60 128 18 TRP A 6 ? ? -146.65 -45.01 129 18 TYR A 7 ? ? -179.62 -166.48 130 18 ALA A 10 ? ? 65.06 63.13 131 18 MET A 11 ? ? -68.71 -74.06 132 18 ASP A 22 ? ? -153.62 -76.52 133 18 SER A 26 ? ? -85.99 32.68 134 18 HIS A 42 ? ? -94.60 39.01 135 19 PRO A 2 ? ? -69.81 -168.61 136 19 TRP A 6 ? ? -159.48 -42.41 137 19 TYR A 7 ? ? -175.99 -168.22 138 19 ALA A 10 ? ? 64.37 63.47 139 19 ASP A 22 ? ? -155.09 -76.61 140 19 SER A 26 ? ? -85.95 33.16 141 19 HIS A 42 ? ? -95.12 36.96 142 20 PRO A 2 ? ? -69.75 -168.96 143 20 TRP A 6 ? ? -155.26 -42.57 144 20 TYR A 7 ? ? -176.14 -167.03 145 20 ALA A 10 ? ? 65.59 62.10 146 20 MET A 11 ? ? -51.85 -71.18 147 20 ASP A 22 ? ? -155.85 -75.76 148 20 SER A 26 ? ? -85.94 30.97 149 20 HIS A 42 ? ? -94.86 39.25 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 SER A 18 ? ? GLY A 19 ? ? -139.94 2 2 SER A 18 ? ? GLY A 19 ? ? -139.92 3 3 SER A 18 ? ? GLY A 19 ? ? -139.97 4 4 SER A 18 ? ? GLY A 19 ? ? -139.66 5 5 SER A 18 ? ? GLY A 19 ? ? -139.95 6 6 SER A 18 ? ? GLY A 19 ? ? -139.91 7 7 SER A 18 ? ? GLY A 19 ? ? -139.64 8 8 SER A 18 ? ? GLY A 19 ? ? -139.85 9 9 SER A 18 ? ? GLY A 19 ? ? -139.95 10 10 SER A 18 ? ? GLY A 19 ? ? -139.91 11 11 SER A 18 ? ? GLY A 19 ? ? -139.99 12 12 SER A 18 ? ? GLY A 19 ? ? -139.89 13 13 SER A 18 ? ? GLY A 19 ? ? -139.91 14 14 SER A 18 ? ? GLY A 19 ? ? -139.98 15 15 SER A 18 ? ? GLY A 19 ? ? -139.54 16 16 SER A 18 ? ? GLY A 19 ? ? -139.82 17 17 SER A 18 ? ? GLY A 19 ? ? -139.78 18 18 SER A 18 ? ? GLY A 19 ? ? -140.00 19 19 SER A 18 ? ? GLY A 19 ? ? -139.98 20 20 SER A 18 ? ? GLY A 19 ? ? -139.94 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 SER A 18 ? ? 20.79 2 2 SER A 18 ? ? 20.85 3 3 SER A 18 ? ? 20.78 4 4 SER A 18 ? ? 21.47 5 5 SER A 18 ? ? 20.92 6 6 SER A 18 ? ? 20.80 7 7 SER A 18 ? ? 21.44 8 8 SER A 18 ? ? 20.95 9 9 SER A 18 ? ? 20.77 10 10 SER A 18 ? ? 20.90 11 11 SER A 18 ? ? 20.70 12 12 SER A 18 ? ? 20.91 13 13 SER A 18 ? ? 20.83 14 14 SER A 18 ? ? 20.63 15 15 SER A 18 ? ? 21.64 16 16 SER A 18 ? ? 21.04 17 17 SER A 18 ? ? 21.08 18 18 SER A 18 ? ? 20.58 19 19 SER A 18 ? ? 20.70 20 20 SER A 18 ? ? 20.83 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG #