HEADER ISOMERASE 20-OCT-14 2MVZ TITLE SOLUTION STRUCTURE FOR CYCLOPHILIN A FROM GEOBACILLUS KAUSTOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.2.1.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_COMMON: FIRMICUTES; SOURCE 4 ORGANISM_TAXID: 235909; SOURCE 5 STRAIN: HTA426; SOURCE 6 GENE: GK2298; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CYCLOPHILIN, THERMOPHILE, PPIASE, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.J.HOLLIDAY,N.G.ISERN,A.S.GEOFFREY,F.ZHANG,E.Z.EISENMESSER REVDAT 2 01-MAY-24 2MVZ 1 REMARK SEQADV REVDAT 1 08-JUL-15 2MVZ 0 JRNL AUTH M.J.HOLLIDAY,C.CAMILLONI,G.S.ARMSTRONG,N.G.ISERN,F.ZHANG, JRNL AUTH 2 M.VENDRUSCOLO,E.Z.EISENMESSER JRNL TITL STRUCTURE AND DYNAMICS OF GEOCYP: A THERMOPHILIC CYCLOPHILIN JRNL TITL 2 WITH A NOVEL SUBSTRATE BINDING MECHANISM THAT FUNCTIONS JRNL TITL 3 EFFICIENTLY AT LOW TEMPERATURES. JRNL REF BIOCHEMISTRY V. 54 3207 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25923019 JRNL DOI 10.1021/ACS.BIOCHEM.5B00263 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.J.HOLLIDAY,F.ZHANG,N.G.ISERN,G.S.ARMSTRONG,E.Z.EISENMESSER REMARK 1 TITL 1H, 13C, AND 15N BACKBONE AND SIDE CHAIN RESONANCE REMARK 1 TITL 2 ASSIGNMENTS OF THERMOPHILIC GEOBACILLUS KAUSTOPHILUS REMARK 1 TITL 3 CYCLOPHILIN-A. REMARK 1 REF BIOMOL.NMR ASSIGN. V. 8 23 2014 REMARK 1 REFN ISSN 1874-2718 REMARK 1 PMID 23138858 REMARK 1 DOI 10.1007/S12104-012-9445-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR ANALYSIS 2.1, CS-ROSETTA REMARK 3 AUTHORS : SHEN, Y. ET AL. (CS-ROSETTA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000104112. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 GEOCYP, 1.0 MM DTT, 50 MM SODIUM REMARK 210 PHOSPHATE, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC/HMQC; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 2D REMARK 210 1H-13C HSQC/HMQC; 3D 1H-15N REMARK 210 TOCSY; 3D HCCH-TOCSY; REMARK 210 HBCBCGCDCEHE; 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 720 MHZ; 600 MHZ; 800 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.1, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 PRO A 146 C PRO A 146 O -0.228 REMARK 500 2 PRO A 146 C PRO A 146 O -0.228 REMARK 500 3 PRO A 146 C PRO A 146 O -0.227 REMARK 500 4 PRO A 146 C PRO A 146 O -0.228 REMARK 500 5 PRO A 146 C PRO A 146 O -0.228 REMARK 500 6 PRO A 146 C PRO A 146 O -0.228 REMARK 500 7 PRO A 146 C PRO A 146 O -0.228 REMARK 500 8 PRO A 146 C PRO A 146 O -0.229 REMARK 500 9 PRO A 146 C PRO A 146 O -0.229 REMARK 500 10 PRO A 146 C PRO A 146 O -0.229 REMARK 500 11 PRO A 146 C PRO A 146 O -0.228 REMARK 500 12 PRO A 146 C PRO A 146 O -0.228 REMARK 500 13 PRO A 146 C PRO A 146 O -0.228 REMARK 500 14 PRO A 146 C PRO A 146 O -0.228 REMARK 500 15 PRO A 146 C PRO A 146 O -0.228 REMARK 500 16 PRO A 146 C PRO A 146 O -0.228 REMARK 500 17 PRO A 146 C PRO A 146 O -0.228 REMARK 500 18 PRO A 146 C PRO A 146 O -0.228 REMARK 500 19 PRO A 146 C PRO A 146 O -0.228 REMARK 500 20 PRO A 146 C PRO A 146 O -0.227 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 24 93.39 -160.32 REMARK 500 1 PHE A 52 -128.89 -128.99 REMARK 500 1 PRO A 59 102.65 -57.38 REMARK 500 1 HIS A 80 60.01 -110.23 REMARK 500 1 SER A 98 -119.72 -150.04 REMARK 500 1 GLU A 145 73.85 -159.98 REMARK 500 2 PHE A 52 -92.85 -141.24 REMARK 500 2 ASP A 66 44.64 -153.22 REMARK 500 3 ALA A 24 93.67 -164.11 REMARK 500 3 ASN A 41 50.06 -119.98 REMARK 500 3 PHE A 52 -66.39 -124.71 REMARK 500 3 VAL A 53 140.54 -170.80 REMARK 500 3 HIS A 80 67.30 -119.55 REMARK 500 3 THR A 84 109.64 -55.66 REMARK 500 3 HIS A 105 -95.53 -90.65 REMARK 500 4 PHE A 52 -96.83 -130.01 REMARK 500 4 HIS A 80 51.28 -119.42 REMARK 500 4 HIS A 82 76.81 -100.14 REMARK 500 4 THR A 130 50.82 -112.15 REMARK 500 5 ARG A 47 76.60 -119.32 REMARK 500 5 PHE A 52 -77.66 -133.43 REMARK 500 5 CYS A 73 99.71 -63.05 REMARK 500 5 ASP A 76 100.10 -59.15 REMARK 500 5 THR A 96 81.31 -150.50 REMARK 500 6 PHE A 52 -71.04 -129.94 REMARK 500 6 ASP A 76 -150.04 -150.71 REMARK 500 6 HIS A 80 61.62 62.63 REMARK 500 7 HIS A 46 -24.28 -142.76 REMARK 500 7 PHE A 52 -87.49 -129.79 REMARK 500 8 PHE A 52 -102.30 -108.70 REMARK 500 8 ASN A 77 -168.43 -109.89 REMARK 500 8 HIS A 80 77.03 -110.04 REMARK 500 8 ASP A 112 106.21 -59.91 REMARK 500 9 LYS A 14 110.00 -161.39 REMARK 500 9 PHE A 52 -111.20 -134.71 REMARK 500 9 PRO A 59 100.66 -56.61 REMARK 500 9 HIS A 80 67.60 -119.34 REMARK 500 9 SER A 98 -114.91 -151.71 REMARK 500 9 ASN A 133 109.98 -59.48 REMARK 500 9 GLU A 145 79.87 -159.89 REMARK 500 10 ARG A 47 86.72 -154.77 REMARK 500 10 GLU A 74 50.02 -117.13 REMARK 500 10 ASN A 77 -120.52 -99.65 REMARK 500 11 ALA A 24 88.10 -152.54 REMARK 500 11 PHE A 52 -84.76 -128.10 REMARK 500 11 ASP A 66 -70.04 -76.23 REMARK 500 11 SER A 98 -169.94 -121.24 REMARK 500 11 THR A 130 40.15 -106.77 REMARK 500 12 PHE A 52 -112.83 -137.79 REMARK 500 12 PRO A 59 106.43 -56.93 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18628 RELATED DB: BMRB DBREF 2MVZ A 1 146 UNP Q5KXK3 Q5KXK3_GEOKA 1 146 SEQADV 2MVZ GLY A -1 UNP Q5KXK3 EXPRESSION TAG SEQADV 2MVZ SER A 0 UNP Q5KXK3 EXPRESSION TAG SEQRES 1 A 148 GLY SER MET ALA LYS LYS GLY TYR ILE LEU MET GLU ASN SEQRES 2 A 148 GLY GLY LYS ILE GLU PHE GLU LEU PHE PRO ASN GLU ALA SEQRES 3 A 148 PRO VAL THR VAL ALA ASN PHE GLU LYS LEU ALA ASN GLU SEQRES 4 A 148 GLY PHE TYR ASN GLY LEU THR PHE HIS ARG VAL ILE PRO SEQRES 5 A 148 GLY PHE VAL SER GLN GLY GLY CYS PRO ARG GLY ASN GLY SEQRES 6 A 148 THR GLY ASP ALA GLY TYR THR ILE PRO CYS GLU THR ASP SEQRES 7 A 148 ASN ASN PRO HIS ARG HIS VAL THR GLY ALA MET SER MET SEQRES 8 A 148 ALA HIS ARG GLY ARG ASP THR GLY SER CYS GLN PHE PHE SEQRES 9 A 148 ILE VAL HIS GLU PRO GLN PRO HIS LEU ASP GLY VAL HIS SEQRES 10 A 148 THR VAL PHE GLY GLN VAL THR SER GLY MET ASP VAL VAL SEQRES 11 A 148 ARG THR MET LYS ASN GLY ASP VAL MET LYS GLU VAL LYS SEQRES 12 A 148 VAL PHE ASP GLU PRO HELIX 1 1 ALA A 24 ASN A 36 1 13 HELIX 2 2 GLN A 108 ASP A 112 5 5 HELIX 3 3 MET A 125 THR A 130 1 6 SHEET 1 A 5 ALA A 86 MET A 89 0 SHEET 2 A 5 THR A 116 SER A 123 -1 O GLY A 119 N MET A 87 SHEET 3 A 5 LYS A 14 LEU A 19 -1 N GLU A 18 O GLN A 120 SHEET 4 A 5 LYS A 3 MET A 9 -1 N LYS A 3 O LEU A 19 SHEET 5 A 5 MET A 137 ASP A 144 -1 O PHE A 143 N LYS A 4 SHEET 1 B 2 LEU A 43 THR A 44 0 SHEET 2 B 2 CYS A 58 PRO A 59 -1 O CYS A 58 N THR A 44 SHEET 1 C 2 VAL A 53 GLY A 56 0 SHEET 2 C 2 PHE A 101 VAL A 104 -1 O ILE A 103 N SER A 54 CISPEP 1 ASP A 76 ASN A 77 1 6.87 CISPEP 2 ASP A 76 ASN A 77 3 6.59 CISPEP 3 ASP A 76 ASN A 77 7 5.13 CISPEP 4 ASP A 76 ASN A 77 9 5.99 CISPEP 5 ASP A 76 ASN A 77 11 5.25 CISPEP 6 ASP A 76 ASN A 77 12 6.23 CISPEP 7 ASP A 76 ASN A 77 15 0.63 CISPEP 8 ASP A 76 ASN A 77 16 3.45 CISPEP 9 ASP A 76 ASN A 77 19 3.65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1