HEADER TRANSCRIPTION 27-OCT-14 2MW4 TITLE TETRAMERIZATION DOMAIN OF THE CIONA INTESTINALIS P53/P73-B TITLE 2 TRANSCRIPTION FACTOR PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: TETRAMERIZATION DOMAIN (UNP RESIDUES 374-419); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CIONA INTESTINALIS; SOURCE 3 ORGANISM_COMMON: SEA VASE,YELLOW SEA SQUIRT; SOURCE 4 ORGANISM_TAXID: 7719; SOURCE 5 GENE: CI-P53/P73-B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBH4 KEYWDS CIONA INTESTINALIS, P53/P73-B, TRANSCRIPTION FACTOR, TETRAMERIZATION KEYWDS 2 DOMAIN, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.P.HEERING,H.R.A.JONKER,F.LOEHR,H.SCHWALBE,V.DOETSCH REVDAT 3 14-JUN-23 2MW4 1 REMARK SEQADV REVDAT 2 10-FEB-16 2MW4 1 JRNL REVDAT 1 28-OCT-15 2MW4 0 JRNL AUTH J.HEERING,H.R.JONKER,F.LOHR,H.SCHWALBE,V.DOTSCH JRNL TITL STRUCTURAL INVESTIGATIONS OF THE P53/P73 HOMOLOGS FROM THE JRNL TITL 2 TUNICATE SPECIES CIONA INTESTINALIS REVEAL THE SEQUENCE JRNL TITL 3 REQUIREMENTS FOR THE FORMATION OF A TETRAMERIZATION DOMAIN. JRNL REF PROTEIN SCI. V. 25 410 2016 JRNL REFN ISSN 0961-8368 JRNL PMID 26473758 JRNL DOI 10.1002/PRO.2830 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.9, ARIA 1.2 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING WITH TORSION ANGLE REMARK 3 DYNAMICS, REFINEMENT IN EXPLICIT WATER REMARK 4 REMARK 4 2MW4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000104117. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.5 MM [U-100% 15N] PROTEIN, 50 REMARK 210 MM L-ARGININE, 50 MM L-GLUTAMATE, REMARK 210 1 MM DTT, 95% H2O/5% D2O; 2.5 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 50 MM L-ARGININE, 50 MM REMARK 210 L-GLUTAMATE, 1 MM DTT, 95% H2O/5% REMARK 210 D2O; 2 MM [U-100% 15N] PROTEIN, REMARK 210 2 MM [U-100% 13C] PROTEIN, 50 MM REMARK 210 L-ARGININE, 50 MM L-GLUTAMATE, 1 REMARK 210 MM DTT, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D HNCO; 3D HCCCONH; REMARK 210 3D CCCONH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D 1H-13C NOESY REMARK 210 15N-EDITED INTER; 3D 1H-13C HMQC- REMARK 210 NOESY-15N-1H-TROSY; 3D 1H-13C REMARK 210 NOESY J-RESOLVED; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 700 MHZ; 600 REMARK 210 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, ARIA 1.2, TOPSPIN 2.1, REMARK 210 SPARKY 3.114 REMARK 210 METHOD USED : SIMULATED ANNEALING, ENERGY REMARK 210 MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS D 423 OE2 GLU D 427 1.58 REMARK 500 HZ2 LYS C 318 OD1 ASP D 430 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 133 30.12 -98.85 REMARK 500 1 TYR A 134 -62.83 -135.68 REMARK 500 1 ASN A 147 13.11 -149.67 REMARK 500 1 ASN B 247 19.41 -155.21 REMARK 500 1 ASN D 447 12.01 -151.65 REMARK 500 2 TYR A 134 -63.06 -124.28 REMARK 500 2 ASN A 147 11.40 -155.48 REMARK 500 2 ASP B 204 40.07 -81.01 REMARK 500 2 TYR B 234 -65.39 -131.61 REMARK 500 2 ASN B 247 17.00 -155.66 REMARK 500 2 ASP C 333 31.86 -92.72 REMARK 500 2 TYR C 334 -59.23 -136.68 REMARK 500 2 ASN C 347 24.69 -156.20 REMARK 500 2 ASN D 447 12.16 -159.89 REMARK 500 3 TYR A 134 -64.30 -125.21 REMARK 500 3 ARG A 146 -61.03 -96.79 REMARK 500 3 TYR B 234 -63.02 -121.79 REMARK 500 3 ASN B 247 24.24 -153.53 REMARK 500 3 ASP C 304 48.00 -98.71 REMARK 500 3 TYR C 334 -61.05 -126.34 REMARK 500 3 ASN C 347 19.83 -157.84 REMARK 500 3 VAL D 408 104.02 -58.65 REMARK 500 3 TYR D 434 -56.75 -128.18 REMARK 500 3 ASN D 447 12.35 -148.49 REMARK 500 4 VAL A 108 104.53 -59.44 REMARK 500 4 TYR A 134 -65.41 -121.61 REMARK 500 4 ASN A 147 2.58 -155.94 REMARK 500 4 VAL B 208 104.68 -57.02 REMARK 500 4 ASN B 247 10.28 -158.61 REMARK 500 4 TYR C 334 -64.04 -126.55 REMARK 500 4 ASN C 347 9.81 -153.11 REMARK 500 4 TYR D 434 -65.43 -131.33 REMARK 500 4 ASN D 447 23.59 -154.82 REMARK 500 5 ASP A 104 30.86 -79.62 REMARK 500 5 TYR A 134 -61.10 -109.83 REMARK 500 5 ASN A 147 16.17 -156.39 REMARK 500 5 VAL B 208 105.12 -58.66 REMARK 500 5 ASN B 247 16.97 -155.50 REMARK 500 5 TYR C 334 -61.34 -108.45 REMARK 500 5 ASN C 347 19.50 -155.97 REMARK 500 5 ASN D 447 20.58 -154.50 REMARK 500 6 TYR A 134 -62.44 -125.79 REMARK 500 6 ASN A 147 15.59 -157.13 REMARK 500 6 ASP B 204 30.64 -80.30 REMARK 500 6 TYR B 234 -62.45 -126.98 REMARK 500 6 ASN B 247 19.69 -156.30 REMARK 500 6 ASP C 304 22.40 -76.73 REMARK 500 6 TYR C 334 -66.30 -122.90 REMARK 500 6 ASN D 447 13.22 -141.91 REMARK 500 7 ASP A 104 58.88 -94.45 REMARK 500 REMARK 500 THIS ENTRY HAS 183 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25298 RELATED DB: BMRB DBREF 2MW4 A 104 149 UNP Q4H2Z8 Q4H2Z8_CIOIN 374 419 DBREF 2MW4 B 204 249 UNP Q4H2Z8 Q4H2Z8_CIOIN 374 419 DBREF 2MW4 C 304 349 UNP Q4H2Z8 Q4H2Z8_CIOIN 374 419 DBREF 2MW4 D 404 449 UNP Q4H2Z8 Q4H2Z8_CIOIN 374 419 SEQADV 2MW4 SER A 103 UNP Q4H2Z8 EXPRESSION TAG SEQADV 2MW4 SER B 203 UNP Q4H2Z8 EXPRESSION TAG SEQADV 2MW4 SER C 303 UNP Q4H2Z8 EXPRESSION TAG SEQADV 2MW4 SER D 403 UNP Q4H2Z8 EXPRESSION TAG SEQRES 1 A 47 SER ASP GLY ASP VAL VAL TYR THR LEU ASN ILE ARG GLY SEQRES 2 A 47 LYS ARG LYS PHE GLU LYS VAL LYS GLU TYR LYS GLU ALA SEQRES 3 A 47 LEU ASP LEU LEU ASP TYR VAL GLN PRO ASP VAL LYS LYS SEQRES 4 A 47 ALA CYS CYS GLN ARG ASN GLN ILE SEQRES 1 B 47 SER ASP GLY ASP VAL VAL TYR THR LEU ASN ILE ARG GLY SEQRES 2 B 47 LYS ARG LYS PHE GLU LYS VAL LYS GLU TYR LYS GLU ALA SEQRES 3 B 47 LEU ASP LEU LEU ASP TYR VAL GLN PRO ASP VAL LYS LYS SEQRES 4 B 47 ALA CYS CYS GLN ARG ASN GLN ILE SEQRES 1 C 47 SER ASP GLY ASP VAL VAL TYR THR LEU ASN ILE ARG GLY SEQRES 2 C 47 LYS ARG LYS PHE GLU LYS VAL LYS GLU TYR LYS GLU ALA SEQRES 3 C 47 LEU ASP LEU LEU ASP TYR VAL GLN PRO ASP VAL LYS LYS SEQRES 4 C 47 ALA CYS CYS GLN ARG ASN GLN ILE SEQRES 1 D 47 SER ASP GLY ASP VAL VAL TYR THR LEU ASN ILE ARG GLY SEQRES 2 D 47 LYS ARG LYS PHE GLU LYS VAL LYS GLU TYR LYS GLU ALA SEQRES 3 D 47 LEU ASP LEU LEU ASP TYR VAL GLN PRO ASP VAL LYS LYS SEQRES 4 D 47 ALA CYS CYS GLN ARG ASN GLN ILE HELIX 1 1 GLY A 115 ASP A 133 1 19 HELIX 2 2 GLN A 136 GLN A 145 1 10 HELIX 3 3 GLY B 215 ASP B 233 1 19 HELIX 4 4 GLN B 236 GLN B 248 1 13 HELIX 5 5 GLY C 315 ASP C 333 1 19 HELIX 6 6 GLN C 336 GLN C 345 1 10 HELIX 7 7 GLY D 415 ASP D 433 1 19 HELIX 8 8 GLN D 436 GLN D 445 1 10 SHEET 1 A 2 VAL A 108 ARG A 114 0 SHEET 2 A 2 VAL B 208 ARG B 214 -1 O TYR B 209 N ILE A 113 SHEET 1 B 2 VAL C 308 ARG C 314 0 SHEET 2 B 2 VAL D 408 ARG D 414 -1 O ILE D 413 N TYR C 309 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1